Wall clock time and date at job start Mon Mar 30 2020 05:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38253 * 119.87679 * 2 1 4 4 C 1.37780 * 121.12961 * 180.02562 * 3 2 1 5 5 C 1.39533 * 121.40139 * 359.97438 * 4 3 2 6 6 S 1.76031 * 130.26776 * 180.30407 * 5 4 3 7 7 C 1.75483 * 91.72704 * 180.02562 * 6 5 4 8 8 C 1.39690 * 124.88489 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99675 * 191.32714 * 8 7 6 10 10 C 1.40448 * 119.99963 * 11.32731 * 8 7 6 11 11 N 1.30587 * 119.99754 * 202.41687 * 10 8 7 12 12 Si 1.86795 * 120.00142 * 22.41599 * 10 8 7 13 13 H 1.48498 * 109.47483 * 270.00351 * 12 10 8 14 14 H 1.48509 * 109.47078 * 29.99989 * 12 10 8 15 15 H 1.48494 * 109.47350 * 149.99898 * 12 10 8 16 16 C 1.37374 * 110.22644 * 359.69924 * 7 6 5 17 17 C 1.38913 * 115.07213 * 0.22842 * 16 7 6 18 18 C 1.39138 * 119.87695 * 180.02562 * 2 1 3 19 19 C 1.46441 * 120.34696 * 0.02562 * 18 2 1 20 20 O 1.21360 * 119.99794 * 5.66699 * 19 18 2 21 21 H 1.09001 * 109.46991 * 96.44692 * 1 2 3 22 22 H 1.08995 * 109.47322 * 216.45052 * 1 2 3 23 23 H 1.09003 * 109.46952 * 336.45415 * 1 2 3 24 24 H 1.07999 * 119.43681 * 359.97438 * 3 2 1 25 25 H 1.07994 * 119.30149 * 180.02562 * 4 3 2 26 26 H 0.97004 * 120.00363 * 354.92568 * 11 10 8 27 27 H 1.08005 * 122.46470 * 180.25128 * 16 7 6 28 28 H 1.07993 * 119.99785 * 185.67380 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.1988 0.0000 4 6 3.5731 1.2289 -0.0005 5 6 4.3260 0.0541 -0.0005 6 16 6.0708 -0.1791 0.0060 7 6 5.8908 -1.9247 -0.0002 8 6 6.9487 -2.8369 0.0009 9 1 6.7594 -3.8835 -0.1868 10 6 8.2585 -2.3930 0.2461 11 7 9.2756 -3.1004 -0.1669 12 14 8.5455 -0.7910 1.1627 13 1 8.6128 0.3301 0.1912 14 1 7.4278 -0.5568 2.1121 15 1 9.8240 -0.8726 1.9137 16 6 4.5599 -2.2649 0.0000 17 6 3.6779 -1.1917 -0.0001 18 6 2.2000 -1.2065 -0.0005 19 6 1.4728 -2.4775 -0.0017 20 8 0.2637 -2.4847 -0.1059 21 1 -0.3633 -0.1154 -1.0212 22 1 -0.3634 -0.8266 0.6105 23 1 -0.3633 0.9421 0.4105 24 1 1.6445 2.1276 -0.0004 25 1 4.0809 2.1820 -0.0001 26 1 9.1290 -3.9670 -0.5772 27 1 4.2239 -3.2914 0.0007 28 1 2.0124 -3.4084 0.0904 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396385675.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:29 Heat of formation + Delta-G solvation = -34.286487 kcal Electronic energy + Delta-G solvation = -14732.100597 eV Core-core repulsion = 12223.727885 eV Total energy + Delta-G solvation = -2508.372711 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.68375 -38.95147 -37.05469 -35.45988 -32.87722 -31.49879 -28.76578 -26.85505 -24.81904 -23.37686 -21.95921 -20.82991 -20.34380 -18.32116 -17.25336 -16.94651 -16.21373 -15.67178 -15.49294 -15.39373 -15.20042 -14.51688 -14.38358 -14.08806 -13.79056 -13.56359 -13.06479 -12.87741 -12.56533 -12.38723 -12.34572 -12.02727 -11.63537 -11.32196 -10.86781 -10.26179 -10.19456 -9.85355 -9.36737 -8.50243 -6.74454 -0.37278 0.30593 0.70989 1.11680 1.25604 1.44420 1.61273 1.73793 1.85114 2.04117 2.63796 3.07596 3.60168 3.95215 4.03054 4.39429 4.40876 4.66397 4.79142 4.82804 4.88596 5.01700 5.09592 5.21269 5.24775 5.30277 5.47602 5.59387 5.73790 5.82845 6.02195 6.19399 6.27332 6.64244 7.51425 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.037655 B = 0.007496 C = 0.006400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.407544 B = 3734.528988 C = 4373.637344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.007 3.993 3 C -0.213 4.213 4 C -0.007 4.007 5 C -0.267 4.267 6 S -0.015 6.015 7 C 0.049 3.951 8 C -0.439 4.439 9 H 0.088 0.912 10 C 0.025 3.975 11 N -0.767 5.767 12 Si 0.992 3.008 13 H -0.219 1.219 14 H -0.225 1.225 15 H -0.220 1.220 16 C -0.385 4.385 17 C 0.061 3.939 18 C -0.271 4.271 19 C 0.389 3.611 20 O -0.505 6.505 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.150 0.850 25 H 0.137 0.863 26 H 0.298 0.702 27 H 0.117 0.883 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.278 6.520 1.783 8.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.005 3.995 3 C -0.233 4.233 4 C -0.029 4.029 5 C -0.379 4.379 6 S 0.241 5.759 7 C -0.069 4.069 8 C -0.472 4.472 9 H 0.106 0.894 10 C -0.201 4.201 11 N -0.386 5.386 12 Si 0.808 3.192 13 H -0.144 1.144 14 H -0.149 1.149 15 H -0.143 1.143 16 C -0.408 4.408 17 C 0.053 3.947 18 C -0.274 4.274 19 C 0.256 3.744 20 O -0.386 6.386 21 H 0.090 0.910 22 H 0.094 0.906 23 H 0.099 0.901 24 H 0.168 0.832 25 H 0.155 0.845 26 H 0.110 0.890 27 H 0.135 0.865 28 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.465 8.317 2.192 8.947 hybrid contribution -1.792 -2.738 -0.836 3.377 sum -4.257 5.578 1.356 7.147 Atomic orbital electron populations 1.21022 0.89508 1.03268 1.02850 1.20276 0.96783 0.92066 0.90405 1.20684 0.92979 0.97778 1.11877 1.20736 0.93873 0.95652 0.92682 1.22650 0.96126 0.97516 1.21597 1.83732 1.04476 1.03863 1.83827 1.21501 0.96504 0.93841 0.95062 1.20565 0.92881 0.96786 1.36959 0.89374 1.28467 0.90797 1.07269 0.93548 1.70478 1.34904 1.11749 1.21478 0.84113 0.82350 0.71908 0.80831 1.14354 1.14859 1.14347 1.19638 0.90759 0.97978 1.32450 1.19085 0.92216 0.92013 0.91364 1.21314 0.90984 0.95946 1.19141 1.23603 0.88181 0.93079 0.69571 1.90391 1.17882 1.90694 1.39638 0.90965 0.90634 0.90084 0.83231 0.84528 0.88972 0.86537 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.28 8.72 71.23 0.62 -2.65 15 2 C 0.01 0.24 5.91 -19.65 -0.12 0.12 15 3 C -0.21 -6.90 9.59 22.16 0.21 -6.69 15 4 C -0.01 -0.26 10.00 22.47 0.22 -0.03 15 5 C -0.27 -11.34 6.48 23.12 0.15 -11.19 15 6 S -0.02 -0.65 16.99 -56.49 -0.96 -1.61 15 7 C 0.05 2.34 5.75 22.42 0.13 2.47 15 8 C -0.44 -21.13 9.60 23.16 0.22 -20.91 15 9 H 0.09 4.35 8.06 -2.91 -0.02 4.32 15 10 C 0.02 1.12 5.50 85.42 0.47 1.59 15 11 N -0.77 -35.11 13.64 21.92 0.30 -34.81 15 12 Si 0.99 37.48 24.77 68.60 1.70 39.18 15 13 H -0.22 -7.79 6.80 99.48 0.68 -7.12 15 14 H -0.23 -8.53 6.63 99.48 0.66 -7.87 15 15 H -0.22 -7.53 7.11 99.48 0.71 -6.83 15 16 C -0.38 -18.03 9.77 22.23 0.22 -17.81 15 17 C 0.06 2.70 6.01 -20.05 -0.12 2.58 15 18 C -0.27 -10.87 6.08 -18.40 -0.11 -10.98 15 19 C 0.39 14.49 11.22 69.96 0.78 15.28 15 20 O -0.51 -19.55 14.12 -3.28 -0.05 -19.60 15 21 H 0.07 2.10 8.14 -2.39 -0.02 2.08 15 22 H 0.08 2.46 5.81 -2.39 -0.01 2.44 15 23 H 0.08 1.90 8.03 -2.39 -0.02 1.88 15 24 H 0.15 3.70 8.04 -2.91 -0.02 3.68 15 25 H 0.14 3.97 8.06 -2.91 -0.02 3.94 15 26 H 0.30 13.19 8.73 -92.71 -0.81 12.38 15 27 H 0.12 5.22 7.45 -2.91 -0.02 5.20 15 28 H 0.10 3.45 7.36 -2.91 -0.02 3.43 15 Total: -1.00 -52.26 254.33 4.74 -47.52 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 1.07 Total: 17.55 kcal Atomic # 6 Polarization: -50.91 SS G_CDS: 2.68 Total: -48.23 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.30 Total: -34.81 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.05 Total: -19.60 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 1.70 Total: 39.18 kcal Atomic # 16 Polarization: -0.65 SS G_CDS: -0.96 Total: -1.61 kcal Total: -52.26 4.74 -47.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396385675.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.232 kcal (2) G-P(sol) polarization free energy of solvation -52.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds