Wall clock time and date at job start Mon Mar 30 2020 05:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37652 * 120.03352 * 2 1 4 4 C 1.38027 * 121.16056 * 180.02562 * 3 2 1 5 5 C 1.39911 * 121.47626 * 359.97438 * 4 3 2 6 6 S 1.75838 * 130.31842 * 180.29210 * 5 4 3 7 7 C 1.70018 * 93.09674 * 180.02562 * 6 5 4 8 8 C 1.35971 * 111.89202 * 359.70368 * 7 6 5 9 9 C 1.46162 * 123.19801 * 180.22798 * 8 7 6 10 10 O 1.21380 * 119.99912 * 3.65394 * 9 8 7 11 11 C 1.39178 * 119.70210 * 0.02562 * 5 4 3 12 12 C 1.40428 * 120.03392 * 180.02562 * 2 1 3 13 13 C 1.40760 * 120.44582 * 359.95728 * 12 2 1 14 14 H 1.08005 * 119.99995 * 233.55095 * 13 12 2 15 15 C 1.40002 * 120.00277 * 53.55196 * 13 12 2 16 16 N 1.30826 * 120.00051 * 200.43377 * 15 13 12 17 17 Si 1.86802 * 119.99626 * 20.42743 * 15 13 12 18 18 H 1.48497 * 109.46944 * 95.26148 * 17 15 13 19 19 H 1.48506 * 109.46765 * 215.26063 * 17 15 13 20 20 H 1.48502 * 109.47295 * 335.25973 * 17 15 13 21 21 H 1.08990 * 109.46787 * 263.57717 * 1 2 3 22 22 H 1.09002 * 109.47044 * 23.57720 * 1 2 3 23 23 H 1.09004 * 109.46957 * 143.58063 * 1 2 3 24 24 H 1.07996 * 119.41859 * 0.04195 * 3 2 1 25 25 H 1.07998 * 119.26424 * 180.02562 * 4 3 2 26 26 H 1.08004 * 124.05183 * 179.97438 * 7 6 5 27 27 H 1.07993 * 119.99701 * 183.65216 * 9 8 7 28 28 H 0.96998 * 119.99715 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1917 0.0000 4 6 3.5760 1.2188 -0.0005 5 6 4.3299 0.0402 -0.0006 6 16 6.0723 -0.1959 0.0057 7 6 5.9355 -1.8905 0.0001 8 6 4.6371 -2.2943 0.0003 9 6 4.2361 -3.6998 0.0009 10 8 5.0784 -4.5712 0.0682 11 6 3.6830 -1.1921 -0.0006 12 6 2.2099 -1.2157 -0.0005 13 6 1.5164 -2.4406 -0.0002 14 1 1.7343 -3.1844 0.7520 15 6 0.5440 -2.6948 -0.9748 16 7 -0.3654 -3.6123 -0.7680 17 14 0.5450 -1.7237 -2.5706 18 1 1.2745 -2.4875 -3.6144 19 1 -0.8545 -1.4951 -3.0118 20 1 1.2156 -0.4165 -2.3542 21 1 -0.3632 -0.1150 1.0211 22 1 -0.3633 0.9419 -0.4111 23 1 -0.3633 -0.8270 -0.6101 24 1 1.6471 2.1218 0.0007 25 1 4.0853 2.1712 -0.0001 26 1 6.7787 -2.5654 0.0011 27 1 3.1904 -3.9629 -0.0586 28 1 -1.0392 -3.7881 -1.4431 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396386370.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:20 Heat of formation + Delta-G solvation = 2.658655 kcal Electronic energy + Delta-G solvation = -15267.748945 eV Core-core repulsion = 12760.978295 eV Total energy + Delta-G solvation = -2506.770650 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.92861 -37.79311 -34.73727 -33.67962 -31.19739 -29.45576 -26.64783 -25.08937 -24.76348 -21.32851 -20.36025 -18.89469 -18.10589 -16.55050 -15.59834 -15.22562 -14.90293 -14.10479 -13.71696 -13.63014 -13.53467 -13.06560 -12.93534 -12.28619 -11.99986 -11.90447 -11.45127 -11.44445 -11.06432 -10.69556 -10.40347 -10.07352 -10.03012 -9.83484 -9.25005 -9.01172 -8.31875 -7.65902 -7.08275 -6.84206 -4.64945 1.17605 2.15476 2.18508 2.34760 2.60015 2.97976 3.09929 3.19372 3.66626 3.87326 4.27011 4.90564 5.33599 5.36518 5.70949 5.84799 6.00881 6.12231 6.26592 6.39644 6.50549 6.52335 6.63503 6.67955 6.95519 7.03959 7.21613 7.30194 7.64286 7.69575 8.10464 8.16989 8.37638 8.57977 9.95502 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.021131 B = 0.011883 C = 0.008589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.718389 B = 2355.823414 C = 3259.053170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.172 4.172 3 C -0.063 4.063 4 C -0.188 4.188 5 C -0.117 4.117 6 S 0.105 5.895 7 C -0.210 4.210 8 C -0.150 4.150 9 C 0.394 3.606 10 O -0.493 6.493 11 C -0.120 4.120 12 C 0.138 3.862 13 C -0.480 4.480 14 H 0.102 0.898 15 C 0.099 3.901 16 N -0.802 5.802 17 Si 0.873 3.127 18 H -0.274 1.274 19 H -0.274 1.274 20 H -0.229 1.229 21 H 0.059 0.941 22 H 0.043 0.957 23 H 0.062 0.938 24 H 0.105 0.895 25 H 0.102 0.898 26 H 0.162 0.838 27 H 0.132 0.868 28 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.273 6.375 -0.781 7.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.175 4.175 3 C -0.083 4.083 4 C -0.212 4.212 5 C -0.232 4.232 6 S 0.372 5.628 7 C -0.346 4.346 8 C -0.166 4.166 9 C 0.254 3.746 10 O -0.370 6.370 11 C -0.126 4.126 12 C 0.133 3.867 13 C -0.509 4.509 14 H 0.120 0.880 15 C -0.120 4.120 16 N -0.426 5.426 17 Si 0.696 3.304 18 H -0.200 1.200 19 H -0.199 1.199 20 H -0.151 1.151 21 H 0.077 0.923 22 H 0.062 0.938 23 H 0.081 0.919 24 H 0.123 0.877 25 H 0.120 0.880 26 H 0.179 0.821 27 H 0.148 0.852 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.789 6.667 -0.784 8.246 hybrid contribution -1.224 -0.589 -0.754 1.553 sum 3.566 6.078 -1.538 7.212 Atomic orbital electron populations 1.20597 0.92332 1.00148 1.01668 1.19817 0.95096 0.92400 1.10221 1.20394 0.93003 0.96784 0.98164 1.19720 0.93138 0.94185 1.14198 1.22405 0.94982 0.97693 1.08103 1.82365 1.04430 0.99461 1.76535 1.25158 1.00552 1.00252 1.08680 1.20847 0.91824 0.96875 1.07022 1.24379 0.96009 0.85932 0.68283 1.90426 1.57480 1.51841 1.37221 1.20321 0.94023 0.89240 1.08975 1.18278 0.87237 0.93238 0.87964 1.19063 1.16414 1.01575 1.13845 0.88002 1.25862 0.91874 0.94295 0.99994 1.69707 1.10094 1.28293 1.34479 0.86849 0.79030 0.83393 0.81087 1.19957 1.19945 1.15105 0.92263 0.93808 0.91909 0.87682 0.88029 0.82088 0.85158 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.77 8.66 36.01 0.31 -1.45 15 2 C -0.17 -3.66 4.11 -104.01 -0.43 -4.09 15 3 C -0.06 -1.21 9.58 -39.87 -0.38 -1.59 15 4 C -0.19 -3.61 10.02 -39.03 -0.39 -4.00 15 5 C -0.12 -2.39 6.45 -38.61 -0.25 -2.64 15 6 S 0.11 1.81 22.97 -107.50 -2.47 -0.66 15 7 C -0.21 -3.95 10.41 29.92 0.31 -3.64 15 8 C -0.15 -3.17 5.97 -104.52 -0.62 -3.80 15 9 C 0.39 8.37 11.04 33.91 0.37 8.74 15 10 O -0.49 -11.03 17.50 5.47 0.10 -10.93 15 11 C -0.12 -2.66 6.20 -102.84 -0.64 -3.30 15 12 C 0.14 3.16 4.49 -104.42 -0.47 2.69 15 13 C -0.48 -11.45 6.92 -37.97 -0.26 -11.71 15 14 H 0.10 2.54 6.91 -52.48 -0.36 2.18 15 15 C 0.10 2.33 4.08 -17.32 -0.07 2.26 15 16 N -0.80 -19.42 13.93 55.55 0.77 -18.64 15 17 Si 0.87 18.66 24.90 -169.99 -4.23 14.42 15 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 20 H -0.23 -4.94 5.69 56.52 0.32 -4.62 15 21 H 0.06 1.11 8.14 -51.93 -0.42 0.68 15 22 H 0.04 0.73 8.03 -51.93 -0.42 0.31 15 23 H 0.06 1.30 3.15 -51.93 -0.16 1.14 15 24 H 0.11 1.71 8.04 -52.49 -0.42 1.29 15 25 H 0.10 1.69 8.06 -52.49 -0.42 1.26 15 26 H 0.16 2.76 7.98 -52.48 -0.42 2.34 15 27 H 0.13 2.80 5.08 -52.49 -0.27 2.53 15 28 H 0.29 6.36 8.30 -40.82 -0.34 6.02 15 LS Contribution 250.83 15.07 3.78 3.78 Total: -1.00 -25.50 250.83 -6.68 -32.18 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -2.11 Total: 2.39 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -2.52 Total: -22.55 kcal Atomic # 7 Polarization: -19.42 SS G_CDS: 0.77 Total: -18.64 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.10 Total: -10.93 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -4.23 Total: 14.42 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.47 Total: -0.66 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -25.50 -6.68 -32.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396386370.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.841 kcal (2) G-P(sol) polarization free energy of solvation -25.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds