Wall clock time and date at job start Mon Mar 30 2020 05:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37652 * 120.03352 * 2 1 4 4 C 1.38027 * 121.16056 * 180.02562 * 3 2 1 5 5 C 1.39911 * 121.47626 * 359.97438 * 4 3 2 6 6 S 1.75838 * 130.31842 * 180.29210 * 5 4 3 7 7 C 1.70018 * 93.09674 * 180.02562 * 6 5 4 8 8 C 1.35971 * 111.89202 * 359.70368 * 7 6 5 9 9 C 1.46162 * 123.19801 * 180.22798 * 8 7 6 10 10 O 1.21380 * 119.99912 * 3.65394 * 9 8 7 11 11 C 1.39178 * 119.70210 * 0.02562 * 5 4 3 12 12 C 1.40428 * 120.03392 * 180.02562 * 2 1 3 13 13 C 1.40760 * 120.44582 * 359.95728 * 12 2 1 14 14 H 1.08005 * 119.99995 * 233.55095 * 13 12 2 15 15 C 1.40002 * 120.00277 * 53.55196 * 13 12 2 16 16 N 1.30826 * 120.00051 * 200.43377 * 15 13 12 17 17 Si 1.86802 * 119.99626 * 20.42743 * 15 13 12 18 18 H 1.48497 * 109.46944 * 95.26148 * 17 15 13 19 19 H 1.48506 * 109.46765 * 215.26063 * 17 15 13 20 20 H 1.48502 * 109.47295 * 335.25973 * 17 15 13 21 21 H 1.08990 * 109.46787 * 263.57717 * 1 2 3 22 22 H 1.09002 * 109.47044 * 23.57720 * 1 2 3 23 23 H 1.09004 * 109.46957 * 143.58063 * 1 2 3 24 24 H 1.07996 * 119.41859 * 0.04195 * 3 2 1 25 25 H 1.07998 * 119.26424 * 180.02562 * 4 3 2 26 26 H 1.08004 * 124.05183 * 179.97438 * 7 6 5 27 27 H 1.07993 * 119.99701 * 183.65216 * 9 8 7 28 28 H 0.96998 * 119.99715 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1917 0.0000 4 6 3.5760 1.2188 -0.0005 5 6 4.3299 0.0402 -0.0006 6 16 6.0723 -0.1959 0.0057 7 6 5.9355 -1.8905 0.0001 8 6 4.6371 -2.2943 0.0003 9 6 4.2361 -3.6998 0.0009 10 8 5.0784 -4.5712 0.0682 11 6 3.6830 -1.1921 -0.0006 12 6 2.2099 -1.2157 -0.0005 13 6 1.5164 -2.4406 -0.0002 14 1 1.7343 -3.1844 0.7520 15 6 0.5440 -2.6948 -0.9748 16 7 -0.3654 -3.6123 -0.7680 17 14 0.5450 -1.7237 -2.5706 18 1 1.2745 -2.4875 -3.6144 19 1 -0.8545 -1.4951 -3.0118 20 1 1.2156 -0.4165 -2.3542 21 1 -0.3632 -0.1150 1.0211 22 1 -0.3633 0.9419 -0.4111 23 1 -0.3633 -0.8270 -0.6101 24 1 1.6471 2.1218 0.0007 25 1 4.0853 2.1712 -0.0001 26 1 6.7787 -2.5654 0.0011 27 1 3.1904 -3.9629 -0.0586 28 1 -1.0392 -3.7881 -1.4431 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396386370.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:19 Heat of formation + Delta-G solvation = -10.876831 kcal Electronic energy + Delta-G solvation = -15268.335887 eV Core-core repulsion = 12760.978295 eV Total energy + Delta-G solvation = -2507.357592 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.55566 -39.44155 -36.35513 -35.32720 -32.80697 -31.06020 -28.21563 -26.73575 -26.38116 -22.94312 -21.94736 -20.52594 -19.76576 -18.13384 -17.23072 -16.83132 -16.57343 -15.63698 -15.39793 -15.23894 -15.10044 -14.75711 -14.56875 -13.91202 -13.58258 -13.42889 -13.10632 -12.99284 -12.59625 -12.27403 -12.00482 -11.66320 -11.61278 -11.46076 -10.93417 -10.70382 -9.89408 -9.21039 -8.78860 -8.40092 -6.40739 -0.41498 0.55570 0.67268 0.72129 1.05278 1.28953 1.38366 1.48716 2.02890 2.15995 2.59361 3.23793 3.71228 3.84062 4.22774 4.29842 4.48693 4.63800 4.70989 4.84912 4.97846 4.98188 5.04560 5.12483 5.36684 5.45407 5.60726 5.73139 5.98838 6.11305 6.37244 6.48571 6.71458 6.85416 8.28651 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.021131 B = 0.011883 C = 0.008589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.718389 B = 2355.823414 C = 3259.053170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.178 4.178 3 C -0.070 4.070 4 C -0.171 4.171 5 C -0.154 4.154 6 S 0.200 5.800 7 C -0.197 4.197 8 C -0.189 4.189 9 C 0.400 3.600 10 O -0.511 6.511 11 C -0.134 4.134 12 C 0.110 3.890 13 C -0.500 4.500 14 H 0.071 0.929 15 C 0.075 3.925 16 N -0.846 5.846 17 Si 0.914 3.086 18 H -0.284 1.284 19 H -0.261 1.261 20 H -0.228 1.228 21 H 0.059 0.941 22 H 0.074 0.926 23 H 0.046 0.954 24 H 0.142 0.858 25 H 0.137 0.863 26 H 0.180 0.820 27 H 0.120 0.880 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.046 9.579 -1.166 10.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.181 4.181 3 C -0.091 4.091 4 C -0.194 4.194 5 C -0.269 4.269 6 S 0.468 5.532 7 C -0.333 4.333 8 C -0.205 4.205 9 C 0.262 3.738 10 O -0.390 6.390 11 C -0.139 4.139 12 C 0.105 3.895 13 C -0.530 4.530 14 H 0.088 0.912 15 C -0.139 4.139 16 N -0.474 5.474 17 Si 0.736 3.264 18 H -0.211 1.211 19 H -0.186 1.186 20 H -0.151 1.151 21 H 0.078 0.922 22 H 0.093 0.907 23 H 0.065 0.935 24 H 0.160 0.840 25 H 0.155 0.845 26 H 0.197 0.803 27 H 0.136 0.864 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.561 9.905 -1.164 11.938 hybrid contribution -1.482 -1.386 -0.544 2.100 sum 5.079 8.520 -1.708 10.065 Atomic orbital electron populations 1.20638 0.91545 1.01095 1.01685 1.20151 0.96044 0.92647 1.09285 1.20813 0.93513 0.97410 0.97339 1.20237 0.93350 0.95143 1.10695 1.22873 0.97701 0.97503 1.08818 1.82039 1.00668 0.96448 1.74022 1.25630 1.00182 1.02640 1.04879 1.20786 0.92855 0.96298 1.10542 1.24215 0.95457 0.86516 0.67625 1.90401 1.57576 1.52349 1.38709 1.20538 0.94159 0.90514 1.08730 1.18451 0.88003 0.93506 0.89495 1.18884 1.18007 1.01892 1.14266 0.91174 1.26262 0.91521 0.94723 1.01400 1.69741 1.11516 1.30533 1.35562 0.86250 0.79394 0.82216 0.78529 1.21112 1.18559 1.15077 0.92229 0.90696 0.93545 0.84035 0.84543 0.80267 0.86390 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.50 8.66 71.24 0.62 -2.89 15 2 C -0.18 -7.30 4.11 -19.47 -0.08 -7.38 15 3 C -0.07 -2.44 9.58 22.08 0.21 -2.23 15 4 C -0.17 -5.78 10.02 22.62 0.23 -5.56 15 5 C -0.15 -5.79 6.45 22.90 0.15 -5.65 15 6 S 0.20 6.00 22.97 -56.49 -1.30 4.70 15 7 C -0.20 -6.87 10.41 67.29 0.70 -6.17 15 8 C -0.19 -7.90 5.97 -19.80 -0.12 -8.02 15 9 C 0.40 17.61 11.04 69.88 0.77 18.38 15 10 O -0.51 -23.35 17.50 -3.34 -0.06 -23.41 15 11 C -0.13 -5.83 6.20 -18.71 -0.12 -5.95 15 12 C 0.11 5.06 4.49 -19.74 -0.09 4.97 15 13 C -0.50 -25.08 6.92 23.31 0.16 -24.92 15 14 H 0.07 3.82 6.91 -2.91 -0.02 3.80 15 15 C 0.08 3.69 4.08 85.27 0.35 4.04 15 16 N -0.85 -43.22 13.93 21.84 0.30 -42.92 15 17 Si 0.91 38.85 24.90 68.60 1.71 40.56 15 18 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 19 H -0.26 -10.35 7.11 99.48 0.71 -9.64 15 20 H -0.23 -9.53 5.69 99.48 0.57 -8.97 15 21 H 0.06 2.20 8.14 -2.39 -0.02 2.18 15 22 H 0.07 2.28 8.03 -2.39 -0.02 2.26 15 23 H 0.05 1.92 3.15 -2.38 -0.01 1.91 15 24 H 0.14 3.85 8.04 -2.91 -0.02 3.83 15 25 H 0.14 3.67 8.06 -2.91 -0.02 3.64 15 26 H 0.18 5.57 7.98 -2.91 -0.02 5.55 15 27 H 0.12 5.50 5.08 -2.91 -0.01 5.48 15 28 H 0.29 13.54 8.30 -92.71 -0.77 12.78 15 Total: -1.00 -55.76 250.83 4.50 -51.26 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 1.06 Total: 11.16 kcal Atomic # 6 Polarization: -44.13 SS G_CDS: 2.78 Total: -41.35 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.30 Total: -42.92 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.06 Total: -23.41 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 1.71 Total: 40.56 kcal Atomic # 16 Polarization: 6.00 SS G_CDS: -1.30 Total: 4.70 kcal Total: -55.76 4.50 -51.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396386370.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.381 kcal (2) G-P(sol) polarization free energy of solvation -55.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds