Wall clock time and date at job start Mon Mar 30 2020 05:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38064 * 119.41803 * 2 1 4 4 C 1.39874 * 121.47862 * 179.97438 * 3 2 1 5 5 S 1.75834 * 130.32206 * 179.97438 * 4 3 2 6 6 C 1.70028 * 93.09448 * 179.52390 * 5 4 3 7 7 C 1.35980 * 111.89670 * 0.41128 * 6 5 4 8 8 C 1.46155 * 123.19517 * 179.57689 * 7 6 5 9 9 O 1.21386 * 120.00181 * 4.81170 * 8 7 6 10 10 C 1.39204 * 119.69660 * 359.78155 * 4 3 2 11 11 C 1.47297 * 118.61879 * 0.44661 * 10 4 3 12 12 C 1.40768 * 120.44459 * 179.81171 * 11 10 4 13 13 H 1.07995 * 120.00020 * 36.76762 * 12 11 10 14 14 C 1.39996 * 119.99693 * 217.04665 * 12 11 10 15 15 N 1.30830 * 120.00628 * 8.71876 * 14 12 11 16 16 Si 1.86803 * 119.99872 * 188.71748 * 14 12 11 17 17 H 1.48505 * 109.47040 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47038 * 119.99959 * 16 14 12 19 19 H 1.48500 * 109.47212 * 239.99908 * 16 14 12 20 20 C 1.37618 * 119.41702 * 179.97438 * 2 1 3 21 21 H 1.09006 * 109.46965 * 270.01537 * 1 2 3 22 22 H 1.08995 * 109.47324 * 30.01947 * 1 2 3 23 23 H 1.08998 * 109.47472 * 150.02035 * 1 2 3 24 24 H 1.08003 * 119.25991 * 0.02562 * 3 2 1 25 25 H 1.08000 * 124.04948 * 179.97438 * 6 5 4 26 26 H 1.07998 * 119.99545 * 184.81968 * 8 7 6 27 27 H 0.96993 * 120.00320 * 180.02562 * 15 14 12 28 28 H 1.07997 * 120.03826 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2026 0.0000 4 6 3.5830 1.2529 0.0005 5 16 4.6718 2.6336 0.0001 6 6 6.0617 1.6543 0.0154 7 6 5.7496 0.3308 0.0119 8 6 6.7564 -0.7287 0.0139 9 8 7.9335 -0.4473 0.1071 10 6 4.3156 0.0693 0.0057 11 6 3.5876 -1.2111 0.0004 12 6 4.2900 -2.4311 0.0013 13 1 5.2063 -2.5261 0.5649 14 6 3.8037 -3.5192 -0.7331 15 7 2.7970 -3.3579 -1.5529 16 14 4.5924 -5.2019 -0.5425 17 1 5.7038 -5.1193 0.4390 18 1 3.5774 -6.1725 -0.0598 19 1 5.1226 -5.6515 -1.8547 20 6 2.1829 -1.1987 0.0005 21 1 -0.3633 0.0003 1.0277 22 1 -0.3634 0.8898 -0.5141 23 1 -0.3634 -0.8901 -0.5135 24 1 1.6237 2.1252 0.0004 25 1 7.0714 2.0375 0.0197 26 1 6.4529 -1.7620 -0.0677 27 1 2.4599 -4.1119 -2.0614 28 1 1.6341 -2.1289 0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396386579.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:38 Heat of formation + Delta-G solvation = -9.984878 kcal Electronic energy + Delta-G solvation = -14961.877946 eV Core-core repulsion = 12454.559031 eV Total energy + Delta-G solvation = -2507.318914 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.76344 -37.60087 -34.41844 -34.03658 -30.35165 -29.73537 -26.14258 -25.15566 -24.84345 -21.27923 -20.47950 -18.83473 -17.82658 -16.25870 -15.45072 -15.23131 -14.85581 -13.89432 -13.75097 -13.61919 -13.31613 -12.93988 -12.84915 -12.05958 -11.74358 -11.59746 -11.57221 -11.35697 -11.26246 -10.83196 -10.64877 -10.06761 -9.78852 -9.63619 -9.44784 -8.96966 -8.27033 -7.39336 -7.02676 -6.83032 -4.62939 1.31938 2.35349 2.46306 2.55103 2.78896 2.96147 2.99342 3.00824 3.74414 3.77480 4.35649 5.20531 5.33956 5.57703 5.84977 5.96768 6.00391 6.25378 6.29128 6.37847 6.46412 6.68149 6.77819 6.84225 6.94418 7.14689 7.44043 7.61625 7.77204 7.88119 8.13094 8.28706 8.50260 8.59571 9.93676 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.017894 B = 0.011178 C = 0.007055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.409737 B = 2504.249373 C = 3967.735983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.039 4.039 3 C -0.209 4.209 4 C -0.102 4.102 5 S 0.093 5.907 6 C -0.221 4.221 7 C -0.147 4.147 8 C 0.392 3.608 9 O -0.494 6.494 10 C -0.148 4.148 11 C 0.159 3.841 12 C -0.458 4.458 13 H 0.090 0.910 14 C 0.076 3.924 15 N -0.783 5.783 16 Si 0.910 3.090 17 H -0.256 1.256 18 H -0.269 1.269 19 H -0.270 1.270 20 C -0.170 4.170 21 H 0.057 0.943 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.095 0.905 25 H 0.157 0.843 26 H 0.125 0.875 27 H 0.286 0.714 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.678 2.321 1.373 3.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.042 4.042 3 C -0.235 4.235 4 C -0.216 4.216 5 S 0.360 5.640 6 C -0.357 4.357 7 C -0.162 4.162 8 C 0.252 3.748 9 O -0.371 6.371 10 C -0.153 4.153 11 C 0.154 3.846 12 C -0.487 4.487 13 H 0.107 0.893 14 C -0.144 4.144 15 N -0.406 5.406 16 Si 0.733 3.267 17 H -0.180 1.180 18 H -0.194 1.194 19 H -0.195 1.195 20 C -0.192 4.192 21 H 0.076 0.924 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.113 0.887 25 H 0.175 0.825 26 H 0.141 0.859 27 H 0.097 0.903 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.346 3.934 1.230 4.335 hybrid contribution 0.446 -2.167 -0.132 2.216 sum -0.900 1.767 1.098 2.267 Atomic orbital electron populations 1.20718 0.93086 1.01518 1.00930 1.19313 0.94271 0.93099 0.97516 1.19440 0.89959 0.96436 1.17621 1.22221 0.97426 0.94585 1.07395 1.82278 0.95007 1.09638 1.77082 1.25009 1.03147 0.97296 1.10226 1.20762 0.94629 0.93919 1.06903 1.24330 0.86355 0.95485 0.68581 1.90429 1.21314 1.87980 1.37397 1.20073 0.89519 0.93532 1.12195 1.18279 0.91298 0.89042 0.86001 1.19626 1.08536 0.94680 1.25823 0.89259 1.25934 0.94314 1.00919 0.93262 1.69771 1.20336 1.33320 1.17200 0.86202 0.80226 0.80662 0.79561 1.17968 1.19382 1.19550 1.20863 0.93482 0.95923 1.08908 0.92389 0.92827 0.92087 0.88721 0.82504 0.85897 0.90333 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 9.98 36.00 0.36 -1.43 15 2 C -0.04 -0.83 5.85 -104.91 -0.61 -1.45 15 3 C -0.21 -4.46 9.64 -39.03 -0.38 -4.83 15 4 C -0.10 -2.26 6.45 -38.61 -0.25 -2.50 15 5 S 0.09 1.74 22.97 -107.50 -2.47 -0.73 15 6 C -0.22 -4.40 10.41 29.92 0.31 -4.09 15 7 C -0.15 -3.22 5.97 -104.52 -0.62 -3.85 15 8 C 0.39 8.29 10.92 33.91 0.37 8.66 15 9 O -0.49 -10.98 17.50 5.46 0.10 -10.89 15 10 C -0.15 -3.49 6.20 -102.85 -0.64 -4.12 15 11 C 0.16 3.87 5.61 -104.42 -0.59 3.28 15 12 C -0.46 -10.75 7.67 -37.97 -0.29 -11.04 15 13 H 0.09 1.98 5.53 -52.49 -0.29 1.69 15 14 C 0.08 1.70 5.25 -17.32 -0.09 1.61 15 15 N -0.78 -18.31 11.35 55.55 0.63 -17.68 15 16 Si 0.91 16.92 29.57 -169.99 -5.03 11.90 15 17 H -0.26 -4.71 7.11 56.52 0.40 -4.31 15 18 H -0.27 -4.93 7.11 56.52 0.40 -4.53 15 19 H -0.27 -5.03 7.11 56.52 0.40 -4.62 15 20 C -0.17 -4.00 8.22 -38.97 -0.32 -4.32 15 21 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 22 H 0.05 0.81 8.07 -51.93 -0.42 0.39 15 23 H 0.06 1.01 8.07 -51.93 -0.42 0.59 15 24 H 0.09 1.80 8.06 -52.48 -0.42 1.38 15 25 H 0.16 2.85 7.98 -52.49 -0.42 2.43 15 26 H 0.13 2.50 4.78 -52.49 -0.25 2.25 15 27 H 0.29 6.06 8.30 -40.82 -0.34 5.72 15 28 H 0.12 2.84 6.83 -52.49 -0.36 2.48 15 LS Contribution 260.65 15.07 3.93 3.93 Total: -1.00 -25.89 260.65 -7.73 -33.62 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -2.14 Total: 3.92 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -2.75 Total: -24.07 kcal Atomic # 7 Polarization: -18.31 SS G_CDS: 0.63 Total: -17.68 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.10 Total: -10.89 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.90 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.47 Total: -0.73 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -25.89 -7.73 -33.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396386579.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.636 kcal (2) G-P(sol) polarization free energy of solvation -25.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds