Wall clock time and date at job start Mon Mar 30 2020 05:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.35542 * 119.90907 * 2 1 4 4 C 1.41282 * 120.77341 * 180.31583 * 3 2 1 5 5 C 1.46175 * 129.33740 * 179.63989 * 4 3 2 6 6 C 1.41780 * 123.16196 * 359.97438 * 5 4 3 7 7 O 1.21403 * 119.99723 * 179.97438 * 6 5 4 8 8 C 1.35853 * 113.67233 * 180.02562 * 5 4 3 9 9 S 1.69984 * 112.07360 * 0.02562 * 8 5 4 10 10 C 1.39904 * 119.57332 * 359.64207 * 4 3 2 11 11 C 1.39070 * 119.79736 * 0.03295 * 10 4 3 12 12 C 1.40320 * 120.00586 * 0.02562 * 11 10 4 13 13 C 1.41109 * 120.16667 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99463 * 154.41126 * 13 12 11 15 15 C 1.39896 * 119.99923 * 334.41419 * 13 12 11 16 16 N 1.30869 * 120.00073 * 334.51556 * 15 13 12 17 17 Si 1.86805 * 119.99943 * 154.51935 * 15 13 12 18 18 H 1.48502 * 109.46969 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.46927 * 299.99740 * 17 15 13 20 20 H 1.48496 * 109.47036 * 59.99790 * 17 15 13 21 21 H 1.09004 * 109.47013 * 270.30307 * 1 2 3 22 22 H 1.09007 * 109.47139 * 30.29808 * 1 2 3 23 23 H 1.08999 * 109.47398 * 150.30023 * 1 2 3 24 24 H 1.07997 * 119.60901 * 359.95807 * 3 2 1 25 25 H 1.07993 * 120.00355 * 359.97438 * 6 5 4 26 26 H 1.08005 * 123.96418 * 180.02562 * 8 5 4 27 27 H 1.08003 * 119.99714 * 179.97438 * 11 10 4 28 28 H 0.97004 * 119.99699 * 354.14075 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1827 1.1749 0.0000 4 6 3.5954 1.1962 -0.0067 5 6 4.5048 2.3406 -0.0150 6 6 4.0580 3.6862 -0.0182 7 8 4.8646 4.5935 -0.0247 8 6 5.8182 1.9936 -0.0205 9 16 6.0334 0.3074 -0.0168 10 6 4.3042 -0.0100 -0.0058 11 6 3.6138 -1.2172 0.0010 12 6 2.2106 -1.2231 0.0063 13 6 1.5067 -2.4461 0.0126 14 1 0.5077 -2.4920 0.4206 15 6 2.1028 -3.5990 -0.5094 16 7 3.0385 -3.4974 -1.4188 17 14 1.5632 -5.2834 0.0914 18 1 2.3422 -6.3332 -0.6131 19 1 1.8013 -5.3871 1.5536 20 1 0.1168 -5.4690 -0.1890 21 1 -0.3633 0.0054 1.0277 22 1 -0.3634 0.8874 -0.5185 23 1 -0.3634 -0.8926 -0.5091 24 1 1.6349 2.1056 -0.0007 25 1 3.0003 3.9041 -0.0149 26 1 6.6304 2.7055 -0.0265 27 1 4.1577 -2.1503 0.0013 28 1 3.2594 -2.6300 -1.7925 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396388126.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:45 Heat of formation + Delta-G solvation = -19.104230 kcal Electronic energy + Delta-G solvation = -14788.586370 eV Core-core repulsion = 12280.872011 eV Total energy + Delta-G solvation = -2507.714359 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.22199 -38.10304 -35.22020 -33.45596 -31.01775 -29.06575 -26.76875 -25.15224 -24.96995 -21.58157 -20.39823 -19.03922 -18.15356 -17.00976 -15.45338 -15.28715 -14.47038 -14.34035 -13.98970 -13.84855 -13.47029 -13.05093 -12.61204 -12.29589 -12.07054 -11.75520 -11.60716 -11.31925 -10.93787 -10.85406 -10.55669 -10.06229 -9.82033 -9.72886 -9.34949 -9.18189 -8.68319 -7.69724 -7.43798 -6.99927 -4.66683 1.07722 2.26060 2.27757 2.49771 2.72888 3.00820 3.05933 3.23052 3.58995 3.83269 4.30952 4.97513 5.11319 5.36505 5.66896 5.85446 6.00468 6.09399 6.31509 6.35946 6.40198 6.65760 6.68470 6.75456 6.98445 7.23586 7.39774 7.44856 7.52931 7.84412 7.85803 7.88912 8.39124 8.55752 9.77320 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.031870 B = 0.007276 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.369850 B = 3847.397741 C = 4613.064470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.154 4.154 3 C -0.058 4.058 4 C -0.179 4.179 5 C -0.170 4.170 6 C 0.402 3.598 7 O -0.489 6.489 8 C -0.205 4.205 9 S 0.109 5.891 10 C -0.089 4.089 11 C -0.210 4.210 12 C 0.106 3.894 13 C -0.490 4.490 14 H 0.087 0.913 15 C 0.035 3.965 16 N -0.777 5.777 17 Si 1.064 2.936 18 H -0.272 1.272 19 H -0.272 1.272 20 H -0.273 1.273 21 H 0.050 0.950 22 H 0.045 0.955 23 H 0.067 0.933 24 H 0.100 0.900 25 H 0.090 0.910 26 H 0.158 0.842 27 H 0.112 0.888 28 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.358 2.083 1.732 3.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.155 4.155 3 C -0.078 4.078 4 C -0.183 4.183 5 C -0.186 4.186 6 C 0.263 3.737 7 O -0.368 6.368 8 C -0.341 4.341 9 S 0.376 5.624 10 C -0.203 4.203 11 C -0.236 4.236 12 C 0.100 3.900 13 C -0.518 4.518 14 H 0.105 0.895 15 C -0.189 4.189 16 N -0.399 5.399 17 Si 0.887 3.113 18 H -0.196 1.196 19 H -0.197 1.197 20 H -0.198 1.198 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.085 0.915 24 H 0.118 0.882 25 H 0.107 0.893 26 H 0.176 0.824 27 H 0.130 0.870 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.749 0.082 1.519 1.695 hybrid contribution -1.444 2.570 0.124 2.951 sum -0.695 2.652 1.643 3.196 Atomic orbital electron populations 1.20523 0.92493 1.01371 1.00539 1.19495 0.95047 0.92813 1.08135 1.19937 0.91018 0.96707 1.00126 1.18327 0.93156 0.89743 1.17108 1.19733 0.92907 0.96013 1.09986 1.22164 0.94563 0.86875 0.70130 1.90483 1.59779 1.49007 1.37519 1.25092 0.99986 1.01103 1.07940 1.82566 1.05817 0.97935 1.76123 1.22280 0.94377 0.97640 1.06045 1.20385 0.93647 0.93948 1.15580 1.17369 0.90836 0.92363 0.89429 1.20676 1.03370 0.93488 1.34258 0.89544 1.27170 0.92767 1.05755 0.93179 1.70472 1.21498 1.32176 1.15714 0.83634 0.77089 0.73226 0.77367 1.19612 1.19714 1.19832 0.93083 0.93587 0.91460 0.88164 0.89343 0.82396 0.86994 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.66 9.38 36.00 0.34 -1.32 15 2 C -0.15 -3.31 5.88 -104.50 -0.61 -3.92 15 3 C -0.06 -1.17 9.39 -39.39 -0.37 -1.54 15 4 C -0.18 -3.83 6.05 -104.93 -0.63 -4.47 15 5 C -0.17 -3.33 5.83 -106.21 -0.62 -3.95 15 6 C 0.40 7.04 11.20 32.08 0.36 7.40 15 7 O -0.49 -9.57 17.36 5.45 0.09 -9.48 15 8 C -0.20 -3.84 10.34 29.88 0.31 -3.53 15 9 S 0.11 2.07 22.97 -107.50 -2.47 -0.40 15 10 C -0.09 -2.00 6.43 -38.65 -0.25 -2.25 15 11 C -0.21 -5.04 7.98 -38.49 -0.31 -5.35 15 12 C 0.11 2.53 5.29 -106.93 -0.57 1.97 15 13 C -0.49 -11.51 8.03 -37.87 -0.30 -11.81 15 14 H 0.09 1.92 6.92 -52.49 -0.36 1.56 15 15 C 0.04 0.81 4.92 -17.34 -0.09 0.73 15 16 N -0.78 -19.03 12.31 55.54 0.68 -18.35 15 17 Si 1.06 19.52 30.00 -169.99 -5.10 14.42 15 18 H -0.27 -5.03 7.11 56.52 0.40 -4.63 15 19 H -0.27 -4.85 7.11 56.52 0.40 -4.45 15 20 H -0.27 -4.71 7.11 56.52 0.40 -4.30 15 21 H 0.05 0.85 8.14 -51.93 -0.42 0.42 15 22 H 0.05 0.72 8.08 -51.92 -0.42 0.30 15 23 H 0.07 1.24 6.76 -51.93 -0.35 0.89 15 24 H 0.10 1.71 7.55 -52.49 -0.40 1.32 15 25 H 0.09 1.27 7.51 -52.49 -0.39 0.88 15 26 H 0.16 2.69 7.91 -52.48 -0.42 2.28 15 27 H 0.11 2.80 6.47 -52.48 -0.34 2.46 15 28 H 0.30 7.68 6.70 -40.82 -0.27 7.41 15 LS Contribution 260.72 15.07 3.93 3.93 Total: -1.00 -26.02 260.72 -7.78 -33.80 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -2.17 Total: 4.13 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: -2.74 Total: -28.05 kcal Atomic # 7 Polarization: -19.03 SS G_CDS: 0.68 Total: -18.35 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.10 Total: 14.42 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.47 Total: -0.40 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.02 -7.78 -33.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396388126.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.694 kcal (2) G-P(sol) polarization free energy of solvation -26.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds