Wall clock time and date at job start Mon Mar 30 2020 05:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.35542 * 119.90907 * 2 1 4 4 C 1.41282 * 120.77341 * 180.31583 * 3 2 1 5 5 C 1.46175 * 129.33740 * 179.63989 * 4 3 2 6 6 C 1.41780 * 123.16196 * 359.97438 * 5 4 3 7 7 O 1.21403 * 119.99723 * 179.97438 * 6 5 4 8 8 C 1.35853 * 113.67233 * 180.02562 * 5 4 3 9 9 S 1.69984 * 112.07360 * 0.02562 * 8 5 4 10 10 C 1.39904 * 119.57332 * 359.64207 * 4 3 2 11 11 C 1.39070 * 119.79736 * 0.03295 * 10 4 3 12 12 C 1.40320 * 120.00586 * 0.02562 * 11 10 4 13 13 C 1.41109 * 120.16667 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99463 * 154.41126 * 13 12 11 15 15 C 1.39896 * 119.99923 * 334.41419 * 13 12 11 16 16 N 1.30869 * 120.00073 * 334.51556 * 15 13 12 17 17 Si 1.86805 * 119.99943 * 154.51935 * 15 13 12 18 18 H 1.48502 * 109.46969 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.46927 * 299.99740 * 17 15 13 20 20 H 1.48496 * 109.47036 * 59.99790 * 17 15 13 21 21 H 1.09004 * 109.47013 * 270.30307 * 1 2 3 22 22 H 1.09007 * 109.47139 * 30.29808 * 1 2 3 23 23 H 1.08999 * 109.47398 * 150.30023 * 1 2 3 24 24 H 1.07997 * 119.60901 * 359.95807 * 3 2 1 25 25 H 1.07993 * 120.00355 * 359.97438 * 6 5 4 26 26 H 1.08005 * 123.96418 * 180.02562 * 8 5 4 27 27 H 1.08003 * 119.99714 * 179.97438 * 11 10 4 28 28 H 0.97004 * 119.99699 * 354.14075 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1827 1.1749 0.0000 4 6 3.5954 1.1962 -0.0067 5 6 4.5048 2.3406 -0.0150 6 6 4.0580 3.6862 -0.0182 7 8 4.8646 4.5935 -0.0247 8 6 5.8182 1.9936 -0.0205 9 16 6.0334 0.3074 -0.0168 10 6 4.3042 -0.0100 -0.0058 11 6 3.6138 -1.2172 0.0010 12 6 2.2106 -1.2231 0.0063 13 6 1.5067 -2.4461 0.0126 14 1 0.5077 -2.4920 0.4206 15 6 2.1028 -3.5990 -0.5094 16 7 3.0385 -3.4974 -1.4188 17 14 1.5632 -5.2834 0.0914 18 1 2.3422 -6.3332 -0.6131 19 1 1.8013 -5.3871 1.5536 20 1 0.1168 -5.4690 -0.1890 21 1 -0.3633 0.0054 1.0277 22 1 -0.3634 0.8874 -0.5185 23 1 -0.3634 -0.8926 -0.5091 24 1 1.6349 2.1056 -0.0007 25 1 3.0003 3.9041 -0.0149 26 1 6.6304 2.7055 -0.0265 27 1 4.1577 -2.1503 0.0013 28 1 3.2594 -2.6300 -1.7925 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396388126.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:44 Heat of formation + Delta-G solvation = -31.597381 kcal Electronic energy + Delta-G solvation = -14789.128113 eV Core-core repulsion = 12280.872011 eV Total energy + Delta-G solvation = -2508.256103 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.75575 -39.66796 -36.84666 -35.08920 -32.62978 -30.72989 -28.32445 -26.69452 -26.58583 -23.25459 -22.00385 -20.57024 -19.79893 -18.58728 -17.02417 -16.79931 -16.08515 -15.85556 -15.47514 -15.41287 -15.05695 -14.61127 -14.22013 -13.91437 -13.58445 -13.37867 -13.08456 -12.83517 -12.47860 -12.40089 -11.98904 -11.65219 -11.43303 -11.36225 -10.86938 -10.78319 -10.31370 -9.43204 -9.17992 -8.59635 -6.45042 -0.41237 0.59712 0.67546 0.83851 1.13529 1.52655 1.57860 1.80165 2.07432 2.31833 2.65307 3.39672 3.68022 3.82276 4.10527 4.40401 4.46613 4.62136 4.79777 4.89482 4.98762 5.01890 5.07499 5.17100 5.36152 5.52922 5.66814 5.70973 5.87371 6.13135 6.17590 6.47417 6.66763 6.85797 7.97552 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.031870 B = 0.007276 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.369850 B = 3847.397741 C = 4613.064470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.165 4.165 3 C -0.061 4.061 4 C -0.178 4.178 5 C -0.185 4.185 6 C 0.410 3.590 7 O -0.510 6.510 8 C -0.198 4.198 9 S 0.140 5.860 10 C -0.122 4.122 11 C -0.233 4.233 12 C 0.081 3.919 13 C -0.519 4.519 14 H 0.092 0.908 15 C 0.003 3.997 16 N -0.807 5.807 17 Si 1.112 2.888 18 H -0.277 1.277 19 H -0.264 1.264 20 H -0.251 1.251 21 H 0.064 0.936 22 H 0.073 0.927 23 H 0.055 0.945 24 H 0.141 0.859 25 H 0.133 0.867 26 H 0.180 0.820 27 H 0.088 0.912 28 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.155 3.649 2.271 4.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.167 4.167 3 C -0.081 4.081 4 C -0.183 4.183 5 C -0.201 4.201 6 C 0.272 3.728 7 O -0.389 6.389 8 C -0.335 4.335 9 S 0.406 5.594 10 C -0.237 4.237 11 C -0.259 4.259 12 C 0.075 3.925 13 C -0.547 4.547 14 H 0.110 0.890 15 C -0.215 4.215 16 N -0.429 5.429 17 Si 0.929 3.071 18 H -0.202 1.202 19 H -0.189 1.189 20 H -0.175 1.175 21 H 0.083 0.917 22 H 0.092 0.908 23 H 0.074 0.926 24 H 0.158 0.842 25 H 0.149 0.851 26 H 0.197 0.803 27 H 0.106 0.894 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.063 1.657 2.060 2.645 hybrid contribution -1.057 2.282 -0.025 2.515 sum -1.121 3.939 2.035 4.573 Atomic orbital electron populations 1.20524 0.90022 1.02188 1.01663 1.19946 0.97048 0.92351 1.07310 1.20350 0.90841 0.97972 0.98920 1.18738 0.94105 0.89900 1.15537 1.19968 0.92672 0.96777 1.10632 1.22552 0.96092 0.85338 0.68786 1.90490 1.60753 1.49168 1.38519 1.25492 1.00721 1.01253 1.05996 1.82462 1.03380 0.98171 1.75339 1.22626 0.96683 0.97775 1.06612 1.20277 0.94192 0.93735 1.17670 1.17753 0.91141 0.93813 0.89768 1.20842 1.03969 0.94118 1.35789 0.88992 1.28442 0.91900 1.08971 0.92176 1.70581 1.23727 1.30912 1.17722 0.83060 0.77790 0.69166 0.77075 1.20158 1.18923 1.17515 0.91684 0.90784 0.92582 0.84161 0.85074 0.80317 0.89367 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.96 9.38 71.23 0.67 -2.29 15 2 C -0.17 -6.95 5.88 -19.79 -0.12 -7.06 15 3 C -0.06 -2.33 9.39 22.39 0.21 -2.12 15 4 C -0.18 -7.32 6.05 -20.07 -0.12 -7.44 15 5 C -0.18 -6.71 5.83 -20.90 -0.12 -6.83 15 6 C 0.41 12.81 11.20 68.70 0.77 13.58 15 7 O -0.51 -18.27 17.36 -3.41 -0.06 -18.33 15 8 C -0.20 -6.97 10.34 67.27 0.70 -6.28 15 9 S 0.14 5.20 22.97 -56.49 -1.30 3.91 15 10 C -0.12 -5.53 6.43 22.87 0.15 -5.38 15 11 C -0.23 -11.62 7.98 22.98 0.18 -11.44 15 12 C 0.08 3.95 5.29 -21.36 -0.11 3.84 15 13 C -0.52 -25.04 8.03 23.38 0.19 -24.85 15 14 H 0.09 4.16 6.92 -2.91 -0.02 4.14 15 15 C 0.00 0.14 4.92 85.24 0.42 0.56 15 16 N -0.81 -41.49 12.31 21.82 0.27 -41.22 15 17 Si 1.11 39.84 30.00 68.60 2.06 41.89 15 18 H -0.28 -10.03 7.11 99.48 0.71 -9.32 15 19 H -0.26 -9.06 7.11 99.48 0.71 -8.35 15 20 H -0.25 -8.05 7.11 99.48 0.71 -7.34 15 21 H 0.06 2.01 8.14 -2.38 -0.02 1.99 15 22 H 0.07 2.06 8.08 -2.38 -0.02 2.04 15 23 H 0.06 2.01 6.76 -2.39 -0.02 1.99 15 24 H 0.14 4.14 7.55 -2.91 -0.02 4.12 15 25 H 0.13 3.06 7.51 -2.91 -0.02 3.04 15 26 H 0.18 5.55 7.91 -2.91 -0.02 5.53 15 27 H 0.09 4.70 6.47 -2.91 -0.02 4.68 15 28 H 0.29 15.42 6.70 -92.70 -0.62 14.80 15 Total: -1.00 -57.25 260.72 5.12 -52.13 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 1.34 Total: 17.32 kcal Atomic # 6 Polarization: -58.51 SS G_CDS: 2.81 Total: -55.70 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.27 Total: -41.22 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.06 Total: -18.33 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.06 Total: 41.89 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -1.30 Total: 3.91 kcal Total: -57.25 5.12 -52.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396388126.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.535 kcal (2) G-P(sol) polarization free energy of solvation -57.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds