Wall clock time and date at job start Mon Mar 30 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38793 * 120.29661 * 2 1 4 4 C 1.38384 * 118.52084 * 179.97438 * 3 2 1 5 5 C 1.39554 * 119.05276 * 359.97438 * 4 3 2 6 6 C 1.47801 * 119.74928 * 180.02562 * 5 4 3 7 7 N 1.29823 * 125.06378 * 180.25795 * 6 5 4 8 8 C 1.32679 * 116.03115 * 180.20376 * 7 6 5 9 9 C 1.41178 * 122.77414 * 179.79998 * 8 7 6 10 10 H 1.08001 * 120.00364 * 185.94820 * 9 8 7 11 11 C 1.39682 * 120.00114 * 5.95088 * 9 8 7 12 12 N 1.31026 * 120.00068 * 175.94825 * 11 9 8 13 13 Si 1.86806 * 119.99564 * 355.67029 * 11 9 8 14 14 H 1.48502 * 109.46943 * 180.27773 * 13 11 9 15 15 H 1.48501 * 109.47253 * 300.27257 * 13 11 9 16 16 H 1.48496 * 109.47301 * 60.27708 * 13 11 9 17 17 C 1.38038 * 114.45517 * 359.52518 * 8 7 6 18 18 S 1.71003 * 108.87359 * 0.25255 * 17 8 7 19 19 N 1.32845 * 120.50547 * 0.27435 * 5 4 3 20 20 C 1.31674 * 121.59958 * 359.43981 * 19 5 4 21 21 H 1.08992 * 109.47496 * 89.99604 * 1 2 3 22 22 H 1.09003 * 109.46775 * 209.99930 * 1 2 3 23 23 H 1.09003 * 109.47049 * 329.99352 * 1 2 3 24 24 H 1.08000 * 120.73863 * 359.95960 * 3 2 1 25 25 H 1.07998 * 120.47870 * 179.97438 * 4 3 2 26 26 H 0.96999 * 120.00385 * 355.30802 * 12 11 9 27 27 H 1.07999 * 125.56384 * 180.24508 * 17 8 7 28 28 H 1.08000 * 119.53977 * 180.26800 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2073 1.1984 0.0000 4 6 3.5904 1.1555 0.0005 5 6 4.2300 -0.0849 0.0016 6 6 5.7066 -0.1486 0.0028 7 7 6.4059 -1.2424 -0.0010 8 6 7.7240 -1.0909 0.0052 9 6 8.6188 -2.1828 0.0064 10 1 9.6802 -2.0112 0.1083 11 6 8.1315 -3.4853 -0.1244 12 7 8.9661 -4.4923 -0.2031 13 14 6.2896 -3.7922 -0.1792 14 1 6.0344 -5.2488 -0.3146 15 1 5.6675 -3.2951 1.0742 16 1 5.7029 -3.0768 -1.3407 17 6 8.1482 0.2227 0.0042 18 16 6.7784 1.2464 0.0023 19 7 3.5218 -1.2088 -0.0034 20 6 2.2051 -1.1946 0.0015 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 1.6842 2.1433 -0.0007 25 1 4.1668 2.0688 0.0001 26 1 9.9216 -4.3287 -0.2393 27 1 9.1772 0.5505 0.0048 28 1 1.6626 -2.1284 0.0016 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400639526.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:05 Heat of formation + Delta-G solvation = 32.459172 kcal Electronic energy + Delta-G solvation = -14689.390732 eV Core-core repulsion = 12216.205081 eV Total energy + Delta-G solvation = -2473.185651 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.27059 -40.09043 -35.63182 -34.63750 -33.26648 -31.40157 -28.38652 -27.97370 -25.33119 -24.15900 -22.50015 -21.27478 -20.08913 -18.57464 -17.52188 -17.25049 -16.11824 -16.00470 -15.81010 -15.10847 -14.96074 -14.83690 -14.13846 -13.99591 -13.78740 -13.55491 -13.21626 -12.74803 -12.71158 -12.59135 -12.04042 -11.67770 -11.38121 -10.80549 -10.51139 -10.41688 -10.07624 -9.97768 -9.40272 -9.19252 -6.70875 -0.64106 0.32073 0.53847 0.59026 1.30814 1.46099 1.54979 1.98287 2.10122 2.38502 2.84736 3.02635 3.17095 3.61242 3.91088 4.01088 4.06193 4.29290 4.47048 4.68291 4.84292 4.90890 4.93563 5.03109 5.13243 5.25890 5.33650 5.39317 5.75098 5.91860 6.03033 6.59576 6.94960 7.17128 7.97308 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.026456 B = 0.008556 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.126256 B = 3271.665714 C = 4313.258779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.120 4.120 3 C -0.067 4.067 4 C -0.139 4.139 5 C 0.152 3.848 6 C 0.081 3.919 7 N -0.495 5.495 8 C 0.186 3.814 9 C -0.514 4.514 10 H 0.064 0.936 11 C 0.016 3.984 12 N -0.847 5.847 13 Si 1.176 2.824 14 H -0.320 1.320 15 H -0.290 1.290 16 H -0.290 1.290 17 C -0.454 4.454 18 S 0.173 5.827 19 N -0.499 5.499 20 C 0.084 3.916 21 H 0.088 0.912 22 H 0.079 0.921 23 H 0.090 0.910 24 H 0.185 0.815 25 H 0.157 0.843 26 H 0.279 0.721 27 H 0.154 0.846 28 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.693 13.500 0.170 23.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.161 4.161 5 C 0.014 3.986 6 C -0.194 4.194 7 N -0.216 5.216 8 C 0.062 3.938 9 C -0.550 4.550 10 H 0.083 0.917 11 C -0.199 4.199 12 N -0.472 5.472 13 Si 1.009 2.991 14 H -0.252 1.252 15 H -0.218 1.218 16 H -0.219 1.219 17 C -0.594 4.594 18 S 0.424 5.576 19 N -0.209 5.209 20 C -0.075 4.075 21 H 0.106 0.894 22 H 0.098 0.902 23 H 0.109 0.891 24 H 0.203 0.797 25 H 0.174 0.826 26 H 0.089 0.911 27 H 0.172 0.828 28 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -19.541 12.054 0.097 22.960 hybrid contribution 2.768 0.661 0.099 2.848 sum -16.773 12.716 0.196 21.049 Atomic orbital electron populations 1.20828 0.86723 1.04727 1.03919 1.21530 0.99787 0.93144 0.97869 1.21869 0.92019 1.00149 0.95144 1.22220 0.96885 0.96656 1.00358 1.18849 0.88166 0.90803 1.00765 1.25942 0.96984 0.92059 1.04459 1.65797 1.06385 1.30032 1.19422 1.18169 0.87111 0.93840 0.94683 1.20034 0.94260 0.92113 1.48545 0.91734 1.28176 1.11306 0.91536 0.88861 1.70746 1.05814 1.34265 1.36395 0.81608 0.67817 0.70457 0.79230 1.25232 1.21752 1.21857 1.25836 1.03272 0.95583 1.34693 1.81762 0.95004 1.08827 1.71957 1.67589 1.10150 1.31709 1.11477 1.23233 0.88124 0.99994 0.96167 0.89367 0.90192 0.89101 0.79740 0.82570 0.91087 0.82804 0.80730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.03 71.24 0.71 -0.29 15 2 C -0.12 -2.28 5.90 -19.70 -0.12 -2.39 15 3 C -0.07 -1.20 9.84 22.44 0.22 -0.98 15 4 C -0.14 -3.59 9.63 22.62 0.22 -3.37 15 5 C 0.15 5.76 6.75 41.84 0.28 6.04 15 6 C 0.08 3.65 7.37 87.52 0.64 4.30 15 7 N -0.50 -27.09 5.23 -182.90 -0.96 -28.05 15 8 C 0.19 10.60 6.28 39.69 0.25 10.85 15 9 C -0.51 -31.67 9.67 23.34 0.23 -31.44 15 10 H 0.06 4.03 8.06 -2.91 -0.02 4.01 15 11 C 0.02 0.95 5.51 85.16 0.47 1.42 15 12 N -0.85 -51.79 13.67 21.79 0.30 -51.49 15 13 Si 1.18 65.41 25.58 68.60 1.75 67.16 15 14 H -0.32 -17.10 7.11 99.48 0.71 -16.39 15 15 H -0.29 -16.36 7.03 99.48 0.70 -15.66 15 16 H -0.29 -16.40 6.93 99.48 0.69 -15.71 15 17 C -0.45 -22.18 10.99 67.77 0.75 -21.44 15 18 S 0.17 6.58 22.04 -56.49 -1.25 5.33 15 19 N -0.50 -19.63 10.25 -185.04 -1.90 -21.53 15 20 C 0.08 2.31 10.85 84.75 0.92 3.23 15 21 H 0.09 0.68 8.14 -2.39 -0.02 0.66 15 22 H 0.08 0.68 8.09 -2.39 -0.02 0.66 15 23 H 0.09 0.53 8.09 -2.39 -0.02 0.51 15 24 H 0.19 1.58 8.06 -2.91 -0.02 1.56 15 25 H 0.16 3.28 7.25 -2.91 -0.02 3.26 15 26 H 0.28 16.44 8.73 -92.71 -0.81 15.63 15 27 H 0.15 7.14 8.06 -2.91 -0.02 7.12 15 28 H 0.18 3.81 8.06 -2.91 -0.02 3.79 15 Total: -1.00 -76.86 263.19 3.64 -73.22 By element: Atomic # 1 Polarization: -11.68 SS G_CDS: 1.11 Total: -10.56 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: 4.57 Total: -34.08 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -2.55 Total: -101.07 kcal Atomic # 14 Polarization: 65.41 SS G_CDS: 1.75 Total: 67.16 kcal Atomic # 16 Polarization: 6.58 SS G_CDS: -1.25 Total: 5.33 kcal Total: -76.86 3.64 -73.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400639526.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.680 kcal (2) G-P(sol) polarization free energy of solvation -76.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds