Wall clock time and date at job start Mon Mar 30 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35042 * 126.03304 * 2 1 4 4 C 1.35374 * 107.72573 * 179.97438 * 3 2 1 5 5 Cl 1.73601 * 126.04420 * 179.97438 * 4 3 2 6 6 C 1.39928 * 107.90796 * 0.02562 * 4 3 2 7 7 C 1.50701 * 125.89484 * 179.97438 * 6 4 3 8 8 S 1.81401 * 109.47335 * 89.99601 * 7 6 4 9 9 C 1.81389 * 103.00143 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47166 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99685 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99865 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00434 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99751 * 180.02562 * 12 10 9 15 15 H 1.48490 * 109.47119 * 90.00168 * 14 12 10 16 16 H 1.48499 * 109.46938 * 210.00206 * 14 12 10 17 17 H 1.48497 * 109.46919 * 329.99648 * 14 12 10 18 18 N 1.30847 * 108.21156 * 359.75431 * 6 4 3 19 19 H 1.09001 * 109.47060 * 90.00497 * 1 2 3 20 20 H 1.09004 * 109.47073 * 209.99986 * 1 2 3 21 21 H 1.09000 * 109.47212 * 330.00068 * 1 2 3 22 22 H 1.08001 * 126.13792 * 359.94146 * 3 2 1 23 23 H 1.09000 * 109.47612 * 210.00305 * 7 6 4 24 24 H 1.09010 * 109.46931 * 329.99935 * 7 6 4 25 25 H 1.09006 * 109.47351 * 300.00440 * 9 8 7 26 26 H 1.09005 * 109.47081 * 60.00035 * 9 8 7 27 27 H 0.96992 * 120.00346 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2594 1.0921 0.0000 4 6 3.5447 0.6668 0.0006 5 17 4.9554 1.6786 0.0002 6 6 3.5349 -0.7324 0.0003 7 6 4.7496 -1.6245 0.0003 8 16 5.2369 -1.9826 1.7105 9 6 6.6901 -3.0488 1.5059 10 6 7.2211 -3.4397 2.8610 11 1 6.7329 -3.0827 3.7558 12 6 8.3296 -4.2538 2.9585 13 7 8.9238 -4.6890 1.8689 14 14 8.9874 -4.7389 4.6382 15 1 8.3330 -5.9958 5.0820 16 1 10.4551 -4.9481 4.5535 17 1 8.6970 -3.6582 5.6144 18 7 2.2892 -1.1327 0.0050 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3634 0.8900 0.5138 22 1 1.9288 2.1202 -0.0009 23 1 4.5157 -2.5568 -0.5138 24 1 5.5693 -1.1221 -0.5135 25 1 6.4080 -3.9456 0.9541 26 1 7.4610 -2.5104 0.9546 27 1 9.7033 -5.2620 1.9374 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421843820.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:42 Heat of formation + Delta-G solvation = 62.231972 kcal Electronic energy + Delta-G solvation = -12854.278537 eV Core-core repulsion = 10379.951081 eV Total energy + Delta-G solvation = -2474.327455 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 246.029 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.26728 -36.27972 -33.92472 -33.09019 -30.33726 -29.27168 -28.44083 -25.50916 -22.98652 -21.33284 -20.06623 -17.26128 -16.41360 -15.82765 -15.17797 -14.61672 -14.47195 -14.41803 -13.63821 -13.20045 -12.76213 -12.70259 -12.43802 -12.20204 -11.83946 -11.52720 -11.24583 -10.83657 -10.71950 -10.36245 -10.18112 -9.57313 -9.18900 -8.76982 -8.56315 -8.33260 -6.58679 -6.14235 -4.17894 1.62488 1.99837 2.16913 2.81924 3.20840 3.30235 3.35635 3.41907 3.91467 4.39660 4.40913 4.57132 4.84847 4.91784 5.16526 5.22312 5.22991 5.51075 5.83319 5.90095 6.35673 6.75759 7.16547 7.18014 7.56649 7.80470 8.06926 8.83751 9.44598 10.97178 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.036579 B = 0.005035 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.275042 B = 5560.193227 C = 5937.340597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.373 5.373 3 C 0.064 3.936 4 C -0.171 4.171 5 Cl -0.036 7.036 6 C 0.122 3.878 7 C -0.020 4.020 8 S -0.277 6.277 9 C 0.088 3.912 10 C -0.510 4.510 11 H 0.067 0.933 12 C 0.065 3.935 13 N -0.893 5.893 14 Si 0.906 3.094 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.271 1.271 18 N -0.270 5.270 19 H 0.076 0.924 20 H 0.092 0.908 21 H 0.088 0.912 22 H 0.182 0.818 23 H 0.091 0.909 24 H 0.096 0.904 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.470 11.977 -5.975 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.155 5.155 3 C -0.083 4.083 4 C -0.211 4.211 5 Cl -0.007 7.007 6 C -0.046 4.046 7 C -0.169 4.169 8 S -0.051 6.051 9 C -0.059 4.059 10 C -0.549 4.549 11 H 0.085 0.915 12 C -0.138 4.138 13 N -0.531 5.531 14 Si 0.733 3.267 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.196 1.196 18 N -0.094 5.094 19 H 0.094 0.906 20 H 0.111 0.889 21 H 0.107 0.893 22 H 0.199 0.801 23 H 0.110 0.890 24 H 0.114 0.886 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.649 11.310 -5.129 19.978 hybrid contribution 1.545 0.131 -0.333 1.586 sum -14.104 11.441 -5.462 18.965 Atomic orbital electron populations 1.21889 0.73397 1.04806 1.03462 1.48258 1.06690 1.03559 1.56981 1.22137 0.89632 0.93918 1.02585 1.20649 0.88756 0.91250 1.20418 1.98330 1.37819 1.66917 1.97667 1.21575 0.92970 0.91695 0.98340 1.21541 0.94263 1.00177 1.00964 1.86836 1.43126 1.68462 1.06673 1.21098 0.89250 0.94278 1.01288 1.20663 1.12429 1.30715 0.91099 0.91477 1.24952 0.96052 0.95463 0.97379 1.69951 1.21172 1.34307 1.27715 0.86358 0.77903 0.79033 0.83412 1.20388 1.21004 1.19552 1.77528 1.00291 1.07021 1.24527 0.90574 0.88910 0.89322 0.80089 0.89044 0.88567 0.94512 0.94398 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.73 11.47 59.85 0.69 1.42 15 2 N -0.37 -4.62 4.02 -68.12 -0.27 -4.90 15 3 C 0.06 0.76 11.47 -17.16 -0.20 0.56 15 4 C -0.17 -2.58 6.64 -39.97 -0.27 -2.84 15 5 Cl -0.04 -0.52 29.01 -51.86 -1.50 -2.02 15 6 C 0.12 2.11 6.48 -82.38 -0.53 1.57 15 7 C -0.02 -0.38 6.37 36.01 0.23 -0.15 15 8 S -0.28 -6.35 21.64 -107.50 -2.33 -8.68 15 9 C 0.09 2.34 5.70 36.01 0.21 2.54 15 10 C -0.51 -14.67 9.13 -34.44 -0.31 -14.98 15 11 H 0.07 1.94 7.71 -52.49 -0.40 1.53 15 12 C 0.07 1.86 5.46 -17.82 -0.10 1.76 15 13 N -0.89 -26.31 13.29 55.43 0.74 -25.58 15 14 Si 0.91 21.73 29.54 -169.99 -5.02 16.71 15 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 18 N -0.27 -4.51 12.57 33.68 0.42 -4.09 15 19 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 15 20 H 0.09 0.65 8.14 -51.93 -0.42 0.22 15 21 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 15 22 H 0.18 1.35 8.06 -52.49 -0.42 0.93 15 23 H 0.09 1.67 8.14 -51.92 -0.42 1.24 15 24 H 0.10 1.72 8.01 -51.92 -0.42 1.30 15 25 H 0.04 1.01 8.14 -51.92 -0.42 0.59 15 26 H 0.04 1.04 8.14 -51.92 -0.42 0.61 15 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 LS Contribution 275.04 15.07 4.14 4.14 Total: -1.00 -32.63 275.04 -7.02 -39.65 By element: Atomic # 1 Polarization: -2.21 SS G_CDS: -2.91 Total: -5.12 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -0.29 Total: -10.12 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.89 Total: -34.56 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -6.35 SS G_CDS: -2.33 Total: -8.68 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.63 -7.02 -39.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421843820.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.881 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds