Wall clock time and date at job start Mon Mar 30 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35042 * 126.03304 * 2 1 4 4 C 1.35374 * 107.72573 * 179.97438 * 3 2 1 5 5 Cl 1.73601 * 126.04420 * 179.97438 * 4 3 2 6 6 C 1.39928 * 107.90796 * 0.02562 * 4 3 2 7 7 C 1.50701 * 125.89484 * 179.97438 * 6 4 3 8 8 S 1.81401 * 109.47335 * 89.99601 * 7 6 4 9 9 C 1.81389 * 103.00143 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47166 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99685 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99865 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00434 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99751 * 180.02562 * 12 10 9 15 15 H 1.48490 * 109.47119 * 90.00168 * 14 12 10 16 16 H 1.48499 * 109.46938 * 210.00206 * 14 12 10 17 17 H 1.48497 * 109.46919 * 329.99648 * 14 12 10 18 18 N 1.30847 * 108.21156 * 359.75431 * 6 4 3 19 19 H 1.09001 * 109.47060 * 90.00497 * 1 2 3 20 20 H 1.09004 * 109.47073 * 209.99986 * 1 2 3 21 21 H 1.09000 * 109.47212 * 330.00068 * 1 2 3 22 22 H 1.08001 * 126.13792 * 359.94146 * 3 2 1 23 23 H 1.09000 * 109.47612 * 210.00305 * 7 6 4 24 24 H 1.09010 * 109.46931 * 329.99935 * 7 6 4 25 25 H 1.09006 * 109.47351 * 300.00440 * 9 8 7 26 26 H 1.09005 * 109.47081 * 60.00035 * 9 8 7 27 27 H 0.96992 * 120.00346 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2594 1.0921 0.0000 4 6 3.5447 0.6668 0.0006 5 17 4.9554 1.6786 0.0002 6 6 3.5349 -0.7324 0.0003 7 6 4.7496 -1.6245 0.0003 8 16 5.2369 -1.9826 1.7105 9 6 6.6901 -3.0488 1.5059 10 6 7.2211 -3.4397 2.8610 11 1 6.7329 -3.0827 3.7558 12 6 8.3296 -4.2538 2.9585 13 7 8.9238 -4.6890 1.8689 14 14 8.9874 -4.7389 4.6382 15 1 8.3330 -5.9958 5.0820 16 1 10.4551 -4.9481 4.5535 17 1 8.6970 -3.6582 5.6144 18 7 2.2892 -1.1327 0.0050 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3634 0.8900 0.5138 22 1 1.9288 2.1202 -0.0009 23 1 4.5157 -2.5568 -0.5138 24 1 5.5693 -1.1221 -0.5135 25 1 6.4080 -3.9456 0.9541 26 1 7.4610 -2.5104 0.9546 27 1 9.7033 -5.2620 1.9374 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421843820.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:42 Heat of formation + Delta-G solvation = 41.759348 kcal Electronic energy + Delta-G solvation = -12855.166296 eV Core-core repulsion = 10379.951081 eV Total energy + Delta-G solvation = -2475.215215 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 246.029 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.33493 -37.36865 -35.28345 -34.95953 -31.36134 -30.73082 -30.37616 -26.50656 -25.11643 -22.32101 -21.26500 -18.69077 -18.13020 -17.20182 -16.77345 -16.18009 -15.73284 -15.47435 -14.97119 -14.67264 -14.47000 -14.15272 -13.76280 -13.57584 -13.33759 -12.73130 -12.64494 -12.51362 -12.36855 -12.11626 -11.63030 -11.46308 -10.79934 -10.73390 -10.31519 -9.40398 -8.46396 -8.31875 -6.45061 0.38510 0.90252 1.04543 1.40610 1.42419 1.54168 1.74667 1.83155 2.02314 2.38232 3.02554 3.39540 3.57861 3.98380 4.13716 4.40691 4.45905 4.49479 4.69314 4.74144 4.95866 4.96752 5.12413 5.58219 5.89561 5.91254 6.44599 6.61754 7.22511 8.80284 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.036579 B = 0.005035 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.275042 B = 5560.193227 C = 5937.340597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.362 5.362 3 C 0.091 3.909 4 C -0.199 4.199 5 Cl -0.040 7.040 6 C 0.095 3.905 7 C -0.005 4.005 8 S -0.285 6.285 9 C 0.092 3.908 10 C -0.536 4.536 11 H 0.061 0.939 12 C 0.015 3.985 13 N -0.925 5.925 14 Si 0.977 3.023 15 H -0.269 1.269 16 H -0.274 1.274 17 H -0.266 1.266 18 N -0.304 5.304 19 H 0.097 0.903 20 H 0.089 0.911 21 H 0.127 0.873 22 H 0.231 0.769 23 H 0.090 0.910 24 H 0.100 0.900 25 H 0.016 0.984 26 H 0.019 0.981 27 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.122 13.356 -5.454 21.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.144 5.144 3 C -0.058 4.058 4 C -0.239 4.239 5 Cl -0.011 7.011 6 C -0.071 4.071 7 C -0.155 4.155 8 S -0.059 6.059 9 C -0.055 4.055 10 C -0.574 4.574 11 H 0.079 0.921 12 C -0.186 4.186 13 N -0.563 5.563 14 Si 0.800 3.200 15 H -0.194 1.194 16 H -0.199 1.199 17 H -0.190 1.190 18 N -0.129 5.129 19 H 0.116 0.884 20 H 0.108 0.892 21 H 0.145 0.855 22 H 0.248 0.752 23 H 0.108 0.892 24 H 0.119 0.881 25 H 0.034 0.966 26 H 0.037 0.963 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.321 12.679 -4.612 21.955 hybrid contribution 1.864 -0.211 -0.597 1.968 sum -15.457 12.467 -5.209 20.530 Atomic orbital electron populations 1.22409 0.70170 1.06616 1.05473 1.48752 1.08327 1.02614 1.54692 1.22836 0.88179 0.95573 0.99182 1.20836 0.90066 0.90415 1.22541 1.98322 1.38344 1.66677 1.97802 1.21311 0.92569 0.92541 1.00670 1.21429 0.95716 1.00865 0.97467 1.86623 1.40989 1.67307 1.10963 1.20785 0.90594 0.94034 1.00135 1.20961 1.13287 1.31588 0.91612 0.92055 1.25907 0.96034 0.95010 1.01602 1.70055 1.21607 1.34646 1.30028 0.85269 0.77575 0.78886 0.78275 1.19398 1.19891 1.19001 1.77420 1.00586 1.09516 1.25423 0.88430 0.89192 0.85480 0.75233 0.89151 0.88133 0.96596 0.96293 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 11.47 127.77 1.47 2.39 15 2 N -0.36 -7.91 4.02 -369.42 -1.48 -9.39 15 3 C 0.09 1.83 11.47 83.54 0.96 2.79 15 4 C -0.20 -5.68 6.64 22.02 0.15 -5.53 15 5 Cl -0.04 -1.11 29.01 -2.72 -0.08 -1.19 15 6 C 0.09 3.24 6.48 43.12 0.28 3.52 15 7 C -0.01 -0.21 6.37 71.24 0.45 0.25 15 8 S -0.28 -13.41 21.64 -56.49 -1.22 -14.64 15 9 C 0.09 5.10 5.70 71.24 0.41 5.51 15 10 C -0.54 -31.60 9.13 25.60 0.23 -31.36 15 11 H 0.06 3.61 7.71 -2.91 -0.02 3.59 15 12 C 0.02 0.88 5.46 84.66 0.46 1.34 15 13 N -0.92 -55.39 13.29 21.45 0.28 -55.11 15 14 Si 0.98 44.62 29.54 68.60 2.03 46.64 15 15 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 16 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 18 N -0.30 -9.85 12.57 -47.34 -0.60 -10.45 15 19 H 0.10 0.63 8.14 -2.39 -0.02 0.61 15 20 H 0.09 1.01 8.14 -2.38 -0.02 0.99 15 21 H 0.13 0.36 8.14 -2.39 -0.02 0.34 15 22 H 0.23 2.17 8.06 -2.91 -0.02 2.15 15 23 H 0.09 3.42 8.14 -2.39 -0.02 3.40 15 24 H 0.10 3.70 8.01 -2.38 -0.02 3.68 15 25 H 0.02 0.92 8.14 -2.39 -0.02 0.90 15 26 H 0.02 1.09 8.14 -2.39 -0.02 1.07 15 27 H 0.27 15.07 8.31 -92.71 -0.77 14.30 15 Total: -1.00 -72.21 275.04 4.50 -67.70 By element: Atomic # 1 Polarization: -3.65 SS G_CDS: 1.17 Total: -2.48 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 4.41 Total: -21.10 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -1.79 Total: -74.94 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: -13.41 SS G_CDS: -1.22 Total: -14.64 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -72.21 4.50 -67.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421843820.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.464 kcal (2) G-P(sol) polarization free energy of solvation -72.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds