Wall clock time and date at job start Mon Mar 30 2020 06:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47361 * 2 1 4 4 C 1.40072 * 119.92642 * 89.99916 * 3 2 1 5 5 C 1.43192 * 119.85185 * 0.02562 * 4 3 2 6 6 N 3.55237 * 94.92903 * 75.92352 * 2 1 3 7 7 C 1.40030 * 120.29107 * 180.02562 * 4 3 2 8 8 C 1.36315 * 120.15044 * 359.97438 * 7 4 3 9 9 C 1.41261 * 119.84761 * 0.02562 * 8 7 4 10 10 C 1.40401 * 120.14137 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00036 * 155.12371 * 10 9 8 12 12 C 1.46465 * 119.99993 * 335.39177 * 10 9 8 13 13 N 1.29556 * 120.00142 * 344.47753 * 12 10 9 14 14 Si 1.86797 * 120.00127 * 164.46980 * 12 10 9 15 15 H 1.48500 * 109.47151 * 90.00201 * 14 12 10 16 16 H 1.48501 * 109.47311 * 210.00697 * 14 12 10 17 17 H 1.48502 * 109.47085 * 330.00623 * 14 12 10 18 18 C 1.36285 * 119.92117 * 270.26439 * 3 2 1 19 19 N 1.48013 * 120.07933 * 359.97438 * 18 3 2 20 20 O 1.31699 * 119.99925 * 270.26272 * 19 18 3 21 21 O 1.31698 * 120.00025 * 90.26212 * 19 18 3 22 22 H 1.09001 * 109.47094 * 59.99840 * 1 2 3 23 23 H 1.08998 * 109.47597 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47108 * 300.00260 * 1 2 3 25 25 H 1.09005 * 109.47108 * 239.99740 * 2 1 3 26 26 H 1.09001 * 109.47094 * 120.00160 * 2 1 3 27 27 H 1.08001 * 119.92584 * 179.97438 * 7 4 3 28 28 H 1.08000 * 120.07089 * 179.97438 * 8 7 4 29 29 H 0.96999 * 120.00261 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2653 2.0796 1.2140 5 6 2.0255 1.3999 2.4513 6 7 1.8352 0.8608 3.4330 7 6 2.7316 3.4000 1.2229 8 6 2.9624 4.0526 0.0485 9 6 2.7295 3.3940 -1.1793 10 6 2.9646 4.0604 -2.3925 11 1 3.1818 3.4944 -3.2863 12 6 2.9211 5.5235 -2.4447 13 7 2.3810 6.1906 -1.4743 14 14 3.6447 6.4277 -3.9103 15 1 2.5972 6.6074 -4.9475 16 1 4.1435 7.7569 -3.4750 17 1 4.7687 5.6375 -4.4738 18 6 2.2539 2.0635 -1.1812 19 7 2.0021 1.3676 -2.4630 20 8 2.9640 0.6739 -3.0357 21 8 0.8162 1.4420 -3.0309 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.9088 3.9025 2.1623 28 1 3.3216 5.0710 0.0569 29 1 2.3525 7.1595 -1.5087 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575644775.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:11 Heat of formation + Delta-G solvation = 47.352879 kcal Electronic energy + Delta-G solvation = -17268.236451 eV Core-core repulsion = 14352.943769 eV Total energy + Delta-G solvation = -2915.292683 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.36210 -37.37915 -35.82356 -34.72571 -33.42568 -33.28322 -31.16310 -29.25640 -26.80537 -25.28621 -23.49148 -21.88555 -20.50966 -18.56752 -17.88528 -17.27310 -16.29204 -15.96115 -15.41451 -14.57069 -13.94992 -13.71014 -13.37933 -13.25297 -12.88443 -12.50877 -12.31938 -12.14916 -11.88487 -11.73478 -11.41985 -11.30038 -10.91650 -10.85326 -10.70120 -10.52456 -10.42956 -10.00081 -9.86995 -9.80190 -8.48846 -8.20094 -7.71664 -5.30170 0.75799 1.71872 2.01977 2.28388 2.61537 2.65507 2.72707 3.35049 3.41962 3.47079 4.07364 4.73079 4.82803 5.07646 5.24332 5.59499 5.73605 5.81996 5.99532 6.04207 6.10978 6.23189 6.34303 6.44283 6.51125 6.73251 6.79317 7.14714 7.16759 7.26524 7.63278 7.66341 7.74917 7.94396 8.27854 9.13707 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.023097 B = 0.008865 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.966851 B = 3157.787645 C = 4045.824935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.103 4.103 3 C 0.065 3.935 4 C -0.184 4.184 5 C 0.290 3.710 6 N -0.488 5.488 7 C -0.033 4.033 8 C -0.159 4.159 9 C 0.140 3.860 10 C -0.404 4.404 11 H 0.096 0.904 12 C 0.072 3.928 13 N -0.719 5.719 14 Si 0.931 3.069 15 H -0.256 1.256 16 H -0.264 1.264 17 H -0.248 1.248 18 C -0.131 4.131 19 N 0.010 4.990 20 O -0.189 6.189 21 O -0.166 6.166 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.113 0.887 28 H 0.141 0.859 29 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.921 1.880 -1.261 2.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.141 4.141 3 C 0.061 3.939 4 C -0.190 4.190 5 C -0.021 4.021 6 N -0.166 5.166 7 C -0.054 4.054 8 C -0.178 4.178 9 C 0.135 3.865 10 C -0.428 4.428 11 H 0.114 0.886 12 C -0.160 4.160 13 N -0.337 5.337 14 Si 0.751 3.249 15 H -0.180 1.180 16 H -0.189 1.189 17 H -0.171 1.171 18 C -0.214 4.214 19 N 0.504 4.496 20 O -0.389 6.389 21 O -0.373 6.373 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.131 0.869 28 H 0.158 0.842 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.703 1.630 1.028 2.052 hybrid contribution 0.228 0.484 -1.309 1.414 sum 0.931 2.114 -0.282 2.327 Atomic orbital electron populations 1.21729 0.93703 1.01769 1.03071 1.20762 0.97355 0.92951 1.03026 1.18523 0.91714 0.93958 0.89746 1.14831 1.24086 0.95579 0.84480 1.25661 0.91590 0.92281 0.92540 1.81121 1.14033 1.09910 1.11582 1.20473 0.95125 0.91630 0.98165 1.20953 1.06407 1.01033 0.89443 1.17141 0.87655 0.86743 0.94921 1.21291 1.34820 0.90769 0.95906 0.88562 1.27668 0.91945 0.97770 0.98638 1.69072 1.22848 1.11288 1.30449 0.85882 0.80891 0.78529 0.79569 1.18029 1.18860 1.17073 1.19299 1.26831 0.96838 0.78386 1.50323 1.00507 0.96220 1.02550 1.96179 1.35237 1.40098 1.67407 1.96171 1.06436 1.67512 1.67210 0.91372 0.92399 0.92371 0.91215 0.90603 0.86945 0.84168 0.88170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.89 37.16 0.37 -2.10 15 2 C -0.10 -1.92 5.39 -27.88 -0.15 -2.07 15 3 C 0.06 1.34 5.13 -104.64 -0.54 0.81 15 4 C -0.18 -3.66 5.75 -106.62 -0.61 -4.28 15 5 C 0.29 5.71 13.75 -22.47 -0.31 5.40 15 6 N -0.49 -9.95 18.54 41.84 0.78 -9.18 15 7 C -0.03 -0.64 9.68 -39.60 -0.38 -1.03 15 8 C -0.16 -3.31 8.71 -39.13 -0.34 -3.66 15 9 C 0.14 3.21 5.62 -106.77 -0.60 2.61 15 10 C -0.40 -9.13 8.96 -35.46 -0.32 -9.45 15 11 H 0.10 2.24 7.63 -52.49 -0.40 1.84 15 12 C 0.07 1.43 5.35 -15.20 -0.08 1.35 15 13 N -0.72 -14.27 10.96 55.98 0.61 -13.65 15 14 Si 0.93 14.96 29.67 -169.99 -5.04 9.91 15 15 H -0.26 -4.15 7.11 56.52 0.40 -3.75 15 16 H -0.26 -3.99 7.11 56.52 0.40 -3.59 15 17 H -0.25 -4.07 7.11 56.52 0.40 -3.67 15 18 C -0.13 -2.97 6.23 -79.49 -0.50 -3.46 15 19 N 0.01 0.24 2.95 34.18 0.10 0.34 15 20 O -0.19 -4.39 19.87 -31.57 -0.63 -5.02 15 21 O -0.17 -3.87 19.53 -31.57 -0.62 -4.48 15 22 H 0.07 1.23 7.70 -51.93 -0.40 0.83 15 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 25 H 0.07 1.32 7.31 -51.93 -0.38 0.94 15 26 H 0.08 1.34 7.07 -51.93 -0.37 0.97 15 27 H 0.11 1.87 8.06 -52.49 -0.42 1.45 15 28 H 0.14 2.86 6.10 -52.49 -0.32 2.54 15 29 H 0.31 5.23 8.27 -40.82 -0.34 4.89 15 LS Contribution 275.69 15.07 4.15 4.15 Total: -1.00 -24.01 275.69 -6.37 -30.38 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -2.27 Total: 3.42 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -3.46 Total: -15.87 kcal Atomic # 7 Polarization: -23.98 SS G_CDS: 1.49 Total: -22.49 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -1.24 Total: -9.50 kcal Atomic # 14 Polarization: 14.96 SS G_CDS: -5.04 Total: 9.91 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -24.01 -6.37 -30.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575644775.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.732 kcal (2) G-P(sol) polarization free energy of solvation -24.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds