Wall clock time and date at job start Mon Mar 30 2020 06:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47361 * 2 1 4 4 C 1.40072 * 119.92642 * 89.99916 * 3 2 1 5 5 C 1.43192 * 119.85185 * 0.02562 * 4 3 2 6 6 N 3.55237 * 94.92903 * 75.92352 * 2 1 3 7 7 C 1.40030 * 120.29107 * 180.02562 * 4 3 2 8 8 C 1.36315 * 120.15044 * 359.97438 * 7 4 3 9 9 C 1.41261 * 119.84761 * 0.02562 * 8 7 4 10 10 C 1.40401 * 120.14137 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00036 * 155.12371 * 10 9 8 12 12 C 1.46465 * 119.99993 * 335.39177 * 10 9 8 13 13 N 1.29556 * 120.00142 * 344.47753 * 12 10 9 14 14 Si 1.86797 * 120.00127 * 164.46980 * 12 10 9 15 15 H 1.48500 * 109.47151 * 90.00201 * 14 12 10 16 16 H 1.48501 * 109.47311 * 210.00697 * 14 12 10 17 17 H 1.48502 * 109.47085 * 330.00623 * 14 12 10 18 18 C 1.36285 * 119.92117 * 270.26439 * 3 2 1 19 19 N 1.48013 * 120.07933 * 359.97438 * 18 3 2 20 20 O 1.31699 * 119.99925 * 270.26272 * 19 18 3 21 21 O 1.31698 * 120.00025 * 90.26212 * 19 18 3 22 22 H 1.09001 * 109.47094 * 59.99840 * 1 2 3 23 23 H 1.08998 * 109.47597 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47108 * 300.00260 * 1 2 3 25 25 H 1.09005 * 109.47108 * 239.99740 * 2 1 3 26 26 H 1.09001 * 109.47094 * 120.00160 * 2 1 3 27 27 H 1.08001 * 119.92584 * 179.97438 * 7 4 3 28 28 H 1.08000 * 120.07089 * 179.97438 * 8 7 4 29 29 H 0.96999 * 120.00261 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2653 2.0796 1.2140 5 6 2.0255 1.3999 2.4513 6 7 1.8352 0.8608 3.4330 7 6 2.7316 3.4000 1.2229 8 6 2.9624 4.0526 0.0485 9 6 2.7295 3.3940 -1.1793 10 6 2.9646 4.0604 -2.3925 11 1 3.1818 3.4944 -3.2863 12 6 2.9211 5.5235 -2.4447 13 7 2.3810 6.1906 -1.4743 14 14 3.6447 6.4277 -3.9103 15 1 2.5972 6.6074 -4.9475 16 1 4.1435 7.7569 -3.4750 17 1 4.7687 5.6375 -4.4738 18 6 2.2539 2.0635 -1.1812 19 7 2.0021 1.3676 -2.4630 20 8 2.9640 0.6739 -3.0357 21 8 0.8162 1.4420 -3.0309 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.9088 3.9025 2.1623 28 1 3.3216 5.0710 0.0569 29 1 2.3525 7.1595 -1.5087 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575644775.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:11 Heat of formation + Delta-G solvation = 37.706897 kcal Electronic energy + Delta-G solvation = -17268.654732 eV Core-core repulsion = 14352.943769 eV Total energy + Delta-G solvation = -2915.710964 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.02994 -39.14374 -37.43767 -36.29344 -35.27289 -34.80474 -32.81277 -30.82476 -28.45908 -26.99748 -25.02377 -23.48548 -22.13430 -20.24071 -19.50411 -19.11713 -17.93845 -17.55207 -17.01127 -16.04348 -15.64510 -15.22699 -14.89027 -14.78991 -14.39444 -14.04434 -13.92111 -13.65481 -13.42312 -13.23165 -12.85585 -12.80179 -12.53554 -12.39255 -12.26221 -12.20876 -11.92679 -11.68101 -11.65854 -11.36206 -10.12138 -9.83334 -9.21969 -6.97845 -1.08184 0.12100 0.37603 0.51693 1.28910 1.33457 1.47702 1.81839 1.94609 2.05031 2.49306 3.10911 3.21085 3.52552 3.74557 4.15206 4.22291 4.31467 4.42688 4.52322 4.58898 4.71940 4.79557 4.88802 5.05304 5.13610 5.17724 5.48157 5.56238 5.63705 5.78896 6.04683 6.09958 6.29859 6.67852 7.68343 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.023097 B = 0.008865 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.966851 B = 3157.787645 C = 4045.824935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 C 0.062 3.938 4 C -0.181 4.181 5 C 0.302 3.698 6 N -0.494 5.494 7 C -0.025 4.025 8 C -0.167 4.167 9 C 0.119 3.881 10 C -0.432 4.432 11 H 0.078 0.922 12 C 0.046 3.954 13 N -0.733 5.733 14 Si 0.992 3.008 15 H -0.258 1.258 16 H -0.241 1.241 17 H -0.258 1.258 18 C -0.160 4.160 19 N 0.015 4.985 20 O -0.199 6.199 21 O -0.175 6.175 22 H 0.052 0.948 23 H 0.084 0.916 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.022 2.734 -0.558 2.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.139 4.139 3 C 0.058 3.942 4 C -0.188 4.188 5 C -0.009 4.009 6 N -0.172 5.172 7 C -0.045 4.045 8 C -0.186 4.186 9 C 0.114 3.886 10 C -0.456 4.456 11 H 0.096 0.904 12 C -0.185 4.185 13 N -0.351 5.351 14 Si 0.809 3.191 15 H -0.182 1.182 16 H -0.164 1.164 17 H -0.181 1.181 18 C -0.242 4.242 19 N 0.508 4.492 20 O -0.398 6.398 21 O -0.382 6.382 22 H 0.071 0.929 23 H 0.102 0.898 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.161 0.839 28 H 0.162 0.838 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.794 2.481 1.753 3.140 hybrid contribution 0.171 0.199 -1.465 1.488 sum 0.965 2.680 0.288 2.863 Atomic orbital electron populations 1.21696 0.92410 1.03316 1.02295 1.20798 0.98400 0.91615 1.03086 1.18794 0.91096 0.94981 0.89376 1.14909 1.23701 0.95880 0.84270 1.25443 0.91270 0.91972 0.92177 1.81144 1.14184 1.10096 1.11795 1.20752 0.93547 0.91257 0.98929 1.20999 1.07098 1.01274 0.89267 1.17497 0.88074 0.87078 0.95930 1.21427 1.36250 0.92553 0.95348 0.90381 1.28297 0.92047 0.97054 1.01095 1.69008 1.22249 1.12534 1.31339 0.85021 0.79609 0.78104 0.76327 1.18191 1.16373 1.18144 1.19574 1.28801 0.97418 0.78450 1.50451 1.00201 0.95822 1.02732 1.96159 1.35336 1.40578 1.67776 1.96150 1.06734 1.67802 1.67559 0.92898 0.89757 0.92282 0.91991 0.89573 0.83901 0.83797 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 9.89 71.98 0.71 -3.86 15 2 C -0.10 -3.67 5.39 29.85 0.16 -3.51 15 3 C 0.06 2.53 5.13 -19.87 -0.10 2.43 15 4 C -0.18 -6.98 5.75 -21.16 -0.12 -7.10 15 5 C 0.30 11.25 13.75 88.33 1.21 12.46 15 6 N -0.49 -19.00 18.54 19.00 0.35 -18.65 15 7 C -0.02 -0.91 9.68 22.26 0.22 -0.69 15 8 C -0.17 -6.86 8.71 22.56 0.20 -6.66 15 9 C 0.12 5.50 5.62 -21.26 -0.12 5.38 15 10 C -0.43 -19.87 8.96 24.94 0.22 -19.64 15 11 H 0.08 3.77 7.63 -2.91 -0.02 3.74 15 12 C 0.05 1.79 5.35 87.17 0.47 2.26 15 13 N -0.73 -28.29 10.96 23.20 0.25 -28.03 15 14 Si 0.99 29.70 29.67 68.60 2.04 31.73 15 15 H -0.26 -7.73 7.11 99.48 0.71 -7.03 15 16 H -0.24 -6.28 7.11 99.48 0.71 -5.57 15 17 H -0.26 -8.07 7.11 99.48 0.71 -7.36 15 18 C -0.16 -7.33 6.23 36.67 0.23 -7.11 15 19 N 0.02 0.72 2.95 -45.76 -0.13 0.59 15 20 O -0.20 -9.43 19.87 3.52 0.07 -9.36 15 21 O -0.18 -8.34 19.53 3.52 0.07 -8.27 15 22 H 0.05 1.88 7.70 -2.39 -0.02 1.86 15 23 H 0.08 2.28 8.14 -2.39 -0.02 2.26 15 24 H 0.06 1.90 8.14 -2.38 -0.02 1.88 15 25 H 0.06 2.32 7.31 -2.38 -0.02 2.31 15 26 H 0.09 2.91 7.07 -2.39 -0.02 2.89 15 27 H 0.14 4.34 8.06 -2.91 -0.02 4.31 15 28 H 0.14 5.74 6.10 -2.91 -0.02 5.72 15 29 H 0.32 10.41 8.27 -92.71 -0.77 9.65 15 Total: -1.00 -50.30 275.69 6.92 -43.38 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 1.20 Total: 14.66 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 3.07 Total: -26.04 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.47 Total: -46.10 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: 0.14 Total: -17.63 kcal Atomic # 14 Polarization: 29.70 SS G_CDS: 2.04 Total: 31.73 kcal Total: -50.30 6.92 -43.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575644775.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.085 kcal (2) G-P(sol) polarization free energy of solvation -50.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds