Wall clock time and date at job start Mon Mar 30 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46948 * 2 1 4 4 C 1.38497 * 119.33945 * 89.99898 * 3 2 1 5 5 C 1.38985 * 120.09830 * 179.97438 * 4 3 2 6 6 C 1.43199 * 120.56575 * 180.02562 * 5 4 3 7 7 N 5.95572 * 105.77174 * 37.05855 * 2 1 3 8 8 C 1.46762 * 118.86810 * 0.02562 * 5 4 3 9 9 C 1.40189 * 120.61965 * 179.97438 * 8 5 4 10 10 H 1.08001 * 120.00155 * 135.39799 * 9 8 5 11 11 C 1.46506 * 119.99941 * 315.38872 * 9 8 5 12 12 N 1.29536 * 119.99927 * 342.62208 * 11 9 8 13 13 Si 1.86797 * 120.00060 * 162.61813 * 11 9 8 14 14 H 1.48503 * 109.46871 * 90.00098 * 13 11 9 15 15 H 1.48494 * 109.47532 * 210.00137 * 13 11 9 16 16 H 1.48502 * 109.47230 * 330.00329 * 13 11 9 17 17 C 1.41153 * 118.76184 * 359.97438 * 8 5 4 18 18 N 1.48025 * 120.10766 * 179.72429 * 17 8 5 19 19 O 1.31699 * 119.99833 * 174.49764 * 18 17 8 20 20 O 1.31696 * 119.99779 * 354.49631 * 18 17 8 21 21 C 1.37540 * 119.78543 * 0.02562 * 17 8 5 22 22 H 1.08992 * 109.47306 * 60.00080 * 1 2 3 23 23 H 1.09004 * 109.46915 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47265 * 299.99422 * 1 2 3 25 25 H 1.09003 * 109.46988 * 240.00107 * 2 1 3 26 26 H 1.08997 * 109.46923 * 120.00196 * 2 1 3 27 27 H 1.08003 * 119.95295 * 0.02562 * 4 3 2 28 28 H 0.97003 * 119.99943 * 175.12825 * 12 11 9 29 29 H 1.08000 * 119.41668 * 180.02562 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2585 2.0606 1.2073 5 6 2.7222 3.3707 1.2257 6 6 2.9599 4.0417 2.4683 7 7 3.1488 4.5739 3.4540 8 6 2.9640 4.0548 -0.0500 9 6 3.4312 5.3763 -0.0743 10 1 4.2265 5.6556 -0.7495 11 6 2.8404 6.3786 0.8161 12 7 1.6918 6.1548 1.3715 13 14 3.7436 7.9791 1.1505 14 1 3.3390 8.9950 0.1457 15 1 3.4019 8.4654 2.5113 16 1 5.2079 7.7494 1.0601 17 6 2.7174 3.3572 -1.2521 18 7 2.9454 4.0205 -2.5557 19 8 2.8194 3.3360 -3.6737 20 8 3.2741 5.2951 -2.5973 21 6 2.2587 2.0613 -1.2083 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.0750 1.5405 2.1359 28 1 1.3333 6.7856 2.0154 29 1 2.0725 1.5330 -2.1317 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575644846.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:14 Heat of formation + Delta-G solvation = 45.175067 kcal Electronic energy + Delta-G solvation = -17198.175025 eV Core-core repulsion = 14282.787906 eV Total energy + Delta-G solvation = -2915.387120 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.89299 -36.91150 -35.80734 -34.48781 -33.08830 -32.76826 -30.72811 -29.71820 -26.51207 -24.87873 -22.89126 -22.71547 -20.27117 -18.64023 -17.32612 -16.59106 -15.90845 -15.78021 -14.79904 -14.76599 -14.44025 -13.71285 -13.37126 -13.15875 -12.78249 -12.46543 -12.23135 -12.06224 -11.95550 -11.69755 -11.34845 -11.11734 -10.85018 -10.82225 -10.66349 -10.45458 -9.79539 -9.75328 -9.43157 -9.27869 -8.48887 -8.03430 -7.67352 -5.26824 0.69292 1.85779 2.27696 2.71737 2.78061 2.78403 2.82316 3.44157 3.60071 3.64162 4.03800 4.66305 4.88537 5.24623 5.39354 5.54925 5.71080 5.78515 5.89549 5.98957 6.11581 6.12517 6.18675 6.43819 6.49570 6.61231 6.79907 7.07475 7.15776 7.26497 7.59835 7.73114 7.86379 8.42485 8.46786 9.14084 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.019882 B = 0.010227 C = 0.007233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.950401 B = 2737.162844 C = 3870.252785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.062 4.062 3 C -0.202 4.202 4 C -0.001 4.001 5 C -0.084 4.084 6 C 0.307 3.693 7 N -0.474 5.474 8 C 0.129 3.871 9 C -0.331 4.331 10 H 0.126 0.874 11 C 0.064 3.936 12 N -0.704 5.704 13 Si 0.927 3.073 14 H -0.252 1.252 15 H -0.265 1.265 16 H -0.246 1.246 17 C -0.095 4.095 18 N 0.034 4.966 19 O -0.327 6.327 20 O -0.244 6.244 21 C 0.012 3.988 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.119 0.881 28 H 0.309 0.691 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.130 -5.216 2.938 6.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.100 4.100 3 C -0.205 4.205 4 C -0.023 4.023 5 C -0.089 4.089 6 C -0.006 4.006 7 N -0.152 5.152 8 C 0.122 3.878 9 C -0.357 4.357 10 H 0.144 0.856 11 C -0.169 4.169 12 N -0.324 5.324 13 Si 0.747 3.253 14 H -0.176 1.176 15 H -0.190 1.190 16 H -0.169 1.169 17 C -0.194 4.194 18 N 0.467 4.533 19 O -0.478 6.478 20 O -0.416 6.416 21 C -0.008 4.008 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.137 0.863 28 H 0.122 0.878 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.155 -4.555 4.729 6.667 hybrid contribution 0.047 0.684 -0.603 0.913 sum -1.108 -3.870 4.126 5.765 Atomic orbital electron populations 1.21813 0.95854 1.00675 1.02222 1.20238 0.95299 0.92567 1.01881 1.18948 1.12993 0.97338 0.91183 1.20840 0.91894 0.92201 0.97357 1.16825 1.13081 0.92738 0.86269 1.25154 0.91880 0.91726 0.91801 1.81015 1.11876 1.09406 1.12877 1.17737 0.89984 0.93051 0.87058 1.21841 1.10630 0.91294 1.11974 0.85629 1.27790 0.94158 1.02640 0.92356 1.68981 1.12776 1.36801 1.13834 0.85926 0.81573 0.78611 0.79206 1.17562 1.18950 1.16901 1.19867 1.23198 0.95730 0.80587 1.49764 0.98405 1.01906 1.03269 1.96106 1.66341 1.64780 1.20553 1.96126 1.55402 0.94001 1.96053 1.20416 0.90704 0.91326 0.98332 0.92689 0.93263 0.92746 0.91757 0.91765 0.86326 0.87793 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.89 37.16 0.37 -1.44 15 2 C -0.06 -0.81 6.03 -27.88 -0.17 -0.98 15 3 C -0.20 -3.38 5.15 -104.39 -0.54 -3.92 15 4 C 0.00 -0.02 9.37 -39.21 -0.37 -0.38 15 5 C -0.08 -1.73 5.62 -104.25 -0.59 -2.32 15 6 C 0.31 6.49 11.84 -22.47 -0.27 6.23 15 7 N -0.47 -10.31 18.52 41.84 0.77 -9.53 15 8 C 0.13 2.95 5.46 -104.61 -0.57 2.38 15 9 C -0.33 -7.72 7.16 -35.52 -0.25 -7.98 15 10 H 0.13 2.97 6.56 -52.49 -0.34 2.63 15 11 C 0.06 1.39 4.40 -15.19 -0.07 1.33 15 12 N -0.70 -15.57 11.32 55.98 0.63 -14.93 15 13 Si 0.93 17.04 29.68 -169.99 -5.04 11.99 15 14 H -0.25 -4.54 7.11 56.52 0.40 -4.13 15 15 H -0.27 -4.79 7.11 56.52 0.40 -4.38 15 16 H -0.25 -4.48 7.11 56.52 0.40 -4.08 15 17 C -0.10 -2.19 6.93 -79.09 -0.55 -2.74 15 18 N 0.03 0.87 4.98 34.38 0.17 1.04 15 19 O -0.33 -8.50 19.15 -31.57 -0.60 -9.10 15 20 O -0.24 -6.50 16.51 -31.56 -0.52 -7.03 15 21 C 0.01 0.24 9.14 -39.70 -0.36 -0.12 15 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 15 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 15 25 H 0.06 0.78 8.07 -51.93 -0.42 0.36 15 26 H 0.06 0.73 8.07 -51.93 -0.42 0.31 15 27 H 0.12 1.72 8.06 -52.48 -0.42 1.29 15 28 H 0.31 6.23 8.27 -40.82 -0.34 5.89 15 29 H 0.13 2.34 7.55 -52.49 -0.40 1.94 15 LS Contribution 273.49 15.07 4.12 4.12 Total: -1.00 -26.70 273.49 -6.23 -32.94 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -2.40 Total: 0.44 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -3.36 Total: -9.94 kcal Atomic # 7 Polarization: -25.01 SS G_CDS: 1.58 Total: -23.43 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -1.13 Total: -16.13 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.04 Total: 11.99 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -26.70 -6.23 -32.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575644846.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.112 kcal (2) G-P(sol) polarization free energy of solvation -26.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds