Wall clock time and date at job start Mon Mar 30 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46948 * 2 1 4 4 C 1.38497 * 119.33945 * 89.99898 * 3 2 1 5 5 C 1.38985 * 120.09830 * 179.97438 * 4 3 2 6 6 C 1.43199 * 120.56575 * 180.02562 * 5 4 3 7 7 N 5.95572 * 105.77174 * 37.05855 * 2 1 3 8 8 C 1.46762 * 118.86810 * 0.02562 * 5 4 3 9 9 C 1.40189 * 120.61965 * 179.97438 * 8 5 4 10 10 H 1.08001 * 120.00155 * 135.39799 * 9 8 5 11 11 C 1.46506 * 119.99941 * 315.38872 * 9 8 5 12 12 N 1.29536 * 119.99927 * 342.62208 * 11 9 8 13 13 Si 1.86797 * 120.00060 * 162.61813 * 11 9 8 14 14 H 1.48503 * 109.46871 * 90.00098 * 13 11 9 15 15 H 1.48494 * 109.47532 * 210.00137 * 13 11 9 16 16 H 1.48502 * 109.47230 * 330.00329 * 13 11 9 17 17 C 1.41153 * 118.76184 * 359.97438 * 8 5 4 18 18 N 1.48025 * 120.10766 * 179.72429 * 17 8 5 19 19 O 1.31699 * 119.99833 * 174.49764 * 18 17 8 20 20 O 1.31696 * 119.99779 * 354.49631 * 18 17 8 21 21 C 1.37540 * 119.78543 * 0.02562 * 17 8 5 22 22 H 1.08992 * 109.47306 * 60.00080 * 1 2 3 23 23 H 1.09004 * 109.46915 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47265 * 299.99422 * 1 2 3 25 25 H 1.09003 * 109.46988 * 240.00107 * 2 1 3 26 26 H 1.08997 * 109.46923 * 120.00196 * 2 1 3 27 27 H 1.08003 * 119.95295 * 0.02562 * 4 3 2 28 28 H 0.97003 * 119.99943 * 175.12825 * 12 11 9 29 29 H 1.08000 * 119.41668 * 180.02562 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2585 2.0606 1.2073 5 6 2.7222 3.3707 1.2257 6 6 2.9599 4.0417 2.4683 7 7 3.1488 4.5739 3.4540 8 6 2.9640 4.0548 -0.0500 9 6 3.4312 5.3763 -0.0743 10 1 4.2265 5.6556 -0.7495 11 6 2.8404 6.3786 0.8161 12 7 1.6918 6.1548 1.3715 13 14 3.7436 7.9791 1.1505 14 1 3.3390 8.9950 0.1457 15 1 3.4019 8.4654 2.5113 16 1 5.2079 7.7494 1.0601 17 6 2.7174 3.3572 -1.2521 18 7 2.9454 4.0205 -2.5557 19 8 2.8194 3.3360 -3.6737 20 8 3.2741 5.2951 -2.5973 21 6 2.2587 2.0613 -1.2083 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.0750 1.5405 2.1359 28 1 1.3333 6.7856 2.0154 29 1 2.0725 1.5330 -2.1317 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575644846.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:14 Heat of formation + Delta-G solvation = 31.514073 kcal Electronic energy + Delta-G solvation = -17198.767411 eV Core-core repulsion = 14282.787906 eV Total energy + Delta-G solvation = -2915.979505 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.52693 -38.61929 -37.42693 -36.19985 -34.67013 -34.41567 -32.35817 -31.20683 -28.16806 -26.53319 -24.55555 -24.00631 -21.80907 -20.36464 -18.94488 -18.30792 -17.57751 -17.44914 -16.38525 -16.31227 -16.17880 -15.01320 -14.75552 -14.57819 -14.29396 -13.96922 -13.83088 -13.58588 -13.54711 -13.25456 -12.75927 -12.65414 -12.34313 -12.16384 -11.89036 -11.63900 -11.59689 -11.43558 -11.25224 -11.19354 -10.10981 -9.70585 -9.36249 -7.04519 -1.15922 0.18479 0.64128 1.06459 1.19317 1.29876 1.36980 1.91496 1.92453 2.01287 2.32124 3.00463 3.24639 3.92019 4.10229 4.22247 4.30522 4.37453 4.45514 4.70252 4.71603 4.83938 5.08459 5.13431 5.21313 5.25803 5.49748 5.52732 5.60684 5.69756 5.84730 5.90831 6.13816 6.62715 6.76073 7.43697 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.019882 B = 0.010227 C = 0.007233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.950401 B = 2737.162844 C = 3870.252785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.065 4.065 3 C -0.158 4.158 4 C 0.016 3.984 5 C -0.089 4.089 6 C 0.311 3.689 7 N -0.482 5.482 8 C 0.098 3.902 9 C -0.322 4.322 10 H 0.112 0.888 11 C 0.034 3.966 12 N -0.712 5.712 13 Si 0.974 3.026 14 H -0.247 1.247 15 H -0.251 1.251 16 H -0.245 1.245 17 C -0.094 4.094 18 N 0.033 4.967 19 O -0.388 6.388 20 O -0.323 6.323 21 C -0.013 4.013 22 H 0.039 0.961 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.165 0.835 28 H 0.321 0.679 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 -6.915 6.137 9.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 C -0.161 4.161 4 C -0.006 4.006 5 C -0.094 4.094 6 C -0.001 4.001 7 N -0.160 5.160 8 C 0.092 3.908 9 C -0.351 4.351 10 H 0.130 0.870 11 C -0.198 4.198 12 N -0.333 5.333 13 Si 0.791 3.209 14 H -0.171 1.171 15 H -0.174 1.174 16 H -0.168 1.168 17 C -0.199 4.199 18 N 0.439 4.561 19 O -0.523 6.523 20 O -0.473 6.473 21 C -0.033 4.033 22 H 0.058 0.942 23 H 0.094 0.906 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.182 0.818 28 H 0.135 0.865 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.890 -6.191 7.742 10.091 hybrid contribution 0.180 1.036 -1.143 1.553 sum -1.710 -5.154 6.599 8.546 Atomic orbital electron populations 1.21803 0.94846 1.02335 1.01569 1.20432 0.95966 0.89599 1.04185 1.19575 1.08024 0.98828 0.89722 1.21383 0.89043 0.90827 0.99359 1.16923 1.13538 0.94016 0.84964 1.25189 0.91600 0.91585 0.91732 1.81022 1.12209 1.09446 1.13317 1.18052 0.91136 0.93479 0.88174 1.22137 1.09417 0.92343 1.11158 0.87039 1.28435 0.94770 1.04643 0.91950 1.68940 1.12999 1.37860 1.13459 0.85246 0.80585 0.75357 0.79727 1.17108 1.17434 1.16792 1.20356 1.22900 0.96917 0.79723 1.49880 1.00817 1.01687 1.03753 1.96031 1.69693 1.64821 1.21735 1.96057 1.59710 0.95324 1.96231 1.20669 0.92068 0.90496 1.00028 0.94171 0.90584 0.92655 0.90531 0.88560 0.81794 0.86533 0.85001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.89 71.98 0.71 -2.21 15 2 C -0.06 -1.34 6.03 29.85 0.18 -1.16 15 3 C -0.16 -4.72 5.15 -19.71 -0.10 -4.82 15 4 C 0.02 0.47 9.37 22.51 0.21 0.68 15 5 C -0.09 -3.46 5.62 -19.62 -0.11 -3.57 15 6 C 0.31 12.33 11.84 88.33 1.05 13.38 15 7 N -0.48 -19.64 18.52 19.00 0.35 -19.28 15 8 C 0.10 4.52 5.46 -19.86 -0.11 4.41 15 9 C -0.32 -15.30 7.16 24.90 0.18 -15.12 15 10 H 0.11 5.56 6.56 -2.91 -0.02 5.54 15 11 C 0.03 1.45 4.40 87.19 0.38 1.84 15 12 N -0.71 -30.46 11.32 23.21 0.26 -30.20 15 13 Si 0.97 33.85 29.68 68.60 2.04 35.89 15 14 H -0.25 -8.43 7.11 99.48 0.71 -7.72 15 15 H -0.25 -8.15 7.11 99.48 0.71 -7.45 15 16 H -0.25 -8.45 7.11 99.48 0.71 -7.74 15 17 C -0.09 -4.47 6.93 36.93 0.26 -4.21 15 18 N 0.03 1.83 4.98 -45.15 -0.23 1.60 15 19 O -0.39 -21.84 19.15 3.52 0.07 -21.78 15 20 O -0.32 -18.70 16.51 3.52 0.06 -18.65 15 21 C -0.01 -0.49 9.14 22.19 0.20 -0.28 15 22 H 0.04 0.91 8.14 -2.39 -0.02 0.89 15 23 H 0.08 1.15 8.14 -2.38 -0.02 1.13 15 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 15 25 H 0.08 1.50 8.07 -2.39 -0.02 1.48 15 26 H 0.10 1.51 8.07 -2.39 -0.02 1.49 15 27 H 0.16 3.62 8.06 -2.91 -0.02 3.59 15 28 H 0.32 12.30 8.27 -92.71 -0.77 11.53 15 29 H 0.13 4.90 7.55 -2.91 -0.02 4.88 15 Total: -1.00 -61.37 273.49 6.59 -54.78 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 1.19 Total: 8.70 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 2.85 Total: -11.06 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.39 Total: -47.88 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: 0.13 Total: -40.42 kcal Atomic # 14 Polarization: 33.85 SS G_CDS: 2.04 Total: 35.89 kcal Total: -61.37 6.59 -54.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575644846.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.294 kcal (2) G-P(sol) polarization free energy of solvation -61.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds