Wall clock time and date at job start Mon Mar 30 2020 06:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.46892 * 2 1 4 4 C 1.36319 * 120.07313 * 265.26111 * 3 2 1 5 5 C 1.40037 * 120.14681 * 180.29812 * 4 3 2 6 6 C 1.43200 * 119.85223 * 179.71534 * 5 4 3 7 7 N 5.94199 * 108.68574 * 322.87507 * 2 1 3 8 8 C 1.40067 * 120.29198 * 359.69696 * 5 4 3 9 9 N 1.48020 * 119.92365 * 180.02562 * 8 5 4 10 10 O 1.31701 * 119.99944 * 179.97438 * 9 8 5 11 11 O 1.31698 * 119.99945 * 359.97420 * 9 8 5 12 12 C 1.36282 * 120.15537 * 0.02562 * 8 5 4 13 13 C 1.41263 * 120.07894 * 85.00015 * 3 2 1 14 14 C 1.40398 * 120.14173 * 0.02562 * 13 3 2 15 15 H 1.07998 * 120.00081 * 334.46355 * 14 13 3 16 16 C 1.46469 * 119.99777 * 154.73411 * 14 13 3 17 17 N 1.29547 * 120.00085 * 344.80841 * 16 14 13 18 18 Si 1.86797 * 119.99949 * 164.79899 * 16 14 13 19 19 H 1.48504 * 109.46851 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47113 * 120.00048 * 18 16 14 21 21 H 1.48493 * 109.47376 * 240.00639 * 18 16 14 22 22 H 1.09004 * 109.47406 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47101 * 300.00268 * 1 2 3 24 24 H 1.09002 * 109.47268 * 60.00115 * 1 2 3 25 25 H 1.08995 * 109.47341 * 239.99549 * 2 1 3 26 26 H 1.09002 * 109.47268 * 119.99885 * 2 1 3 27 27 H 1.07997 * 119.92496 * 0.02562 * 4 3 2 28 28 H 1.08000 * 120.07999 * 180.02562 * 12 8 5 29 29 H 0.96996 * 120.00228 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3518 2.0324 -1.1757 5 6 2.8246 3.3505 -1.1769 6 6 3.1642 3.9848 -2.4151 7 7 3.4337 4.4880 -3.3973 8 6 2.9664 4.0514 0.0274 9 7 3.4664 5.4446 0.0166 10 8 3.5998 6.1052 1.1481 11 8 3.7778 6.0235 -1.1246 12 6 2.6452 3.4537 1.2093 13 6 2.1678 2.1238 1.2177 14 6 1.8358 1.5016 2.4317 15 1 1.1198 0.6932 2.4461 16 6 2.4560 1.9529 3.6796 17 7 3.5092 2.7064 3.6439 18 14 1.7281 1.4421 5.3223 19 1 0.5361 0.5871 5.0912 20 1 2.7405 0.6802 6.0968 21 1 1.3294 2.6523 6.0848 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 2.2443 1.4976 -2.1078 28 1 2.7546 3.9954 2.1372 29 1 3.9201 3.0049 4.4702 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575645140.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:50 Heat of formation + Delta-G solvation = 37.001567 kcal Electronic energy + Delta-G solvation = -17083.236444 eV Core-core repulsion = 14167.494894 eV Total energy + Delta-G solvation = -2915.741549 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.95450 -39.32567 -37.38997 -35.88661 -35.45896 -34.91664 -32.28725 -31.08095 -28.02928 -27.41624 -24.11750 -23.78219 -22.05476 -20.20262 -19.54308 -19.20459 -17.83535 -17.04081 -16.98225 -16.35682 -15.35535 -15.20678 -14.76227 -14.52177 -14.35924 -13.92881 -13.71586 -13.50569 -13.35158 -12.99738 -12.78612 -12.52174 -12.43419 -12.37088 -12.10224 -11.90987 -11.89334 -11.48955 -11.46609 -11.34336 -10.00474 -9.87607 -9.14088 -6.67604 -1.70939 0.20296 0.28705 0.74189 1.37873 1.43391 1.62581 1.94358 2.02628 2.10011 2.58022 3.21522 3.30065 3.90435 4.18482 4.27351 4.34387 4.60963 4.68742 4.71915 4.83687 4.90611 5.13407 5.15490 5.29782 5.31384 5.43854 5.65033 5.70516 5.80425 5.83031 6.11338 6.30597 6.43659 6.80619 7.74657 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.020368 B = 0.009155 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.364795 B = 3057.783956 C = 4278.091178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.060 4.060 3 C -0.176 4.176 4 C -0.004 4.004 5 C -0.199 4.199 6 C 0.283 3.717 7 N -0.492 5.492 8 C 0.054 3.946 9 N -0.007 5.007 10 O -0.197 6.197 11 O -0.242 6.242 12 C -0.093 4.093 13 C 0.079 3.921 14 C -0.375 4.375 15 H 0.134 0.866 16 C 0.027 3.973 17 N -0.751 5.751 18 Si 0.997 3.003 19 H -0.235 1.235 20 H -0.261 1.261 21 H -0.266 1.266 22 H 0.071 0.929 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.146 0.854 28 H 0.142 0.858 29 H 0.316 0.684 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.027 -10.268 6.036 13.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.097 4.097 3 C -0.178 4.178 4 C -0.025 4.025 5 C -0.206 4.206 6 C -0.027 4.027 7 N -0.172 5.172 8 C -0.034 4.034 9 N 0.460 4.540 10 O -0.390 6.390 11 O -0.421 6.421 12 C -0.115 4.115 13 C 0.074 3.926 14 C -0.398 4.398 15 H 0.151 0.849 16 C -0.202 4.202 17 N -0.370 5.370 18 Si 0.815 3.185 19 H -0.157 1.157 20 H -0.185 1.185 21 H -0.191 1.191 22 H 0.090 0.910 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.164 0.836 28 H 0.160 0.840 29 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.580 -9.878 4.543 12.221 hybrid contribution 0.448 1.037 0.897 1.443 sum -5.132 -8.841 5.440 11.580 Atomic orbital electron populations 1.21739 0.94680 1.01970 1.01642 1.20269 0.96073 0.90487 1.02900 1.19918 1.08721 0.97928 0.91183 1.20351 0.93690 0.89327 0.99115 1.14932 1.24997 0.97378 0.83268 1.25624 0.92190 0.92095 0.92757 1.80969 1.13323 1.09177 1.13703 1.20265 1.08849 0.77012 0.97317 1.51118 0.96099 1.05232 1.01503 1.96154 1.59925 1.66372 1.16590 1.96226 1.58214 1.72760 1.14883 1.21416 0.99016 0.96377 0.94680 1.17709 0.91183 0.88963 0.94699 1.21908 1.16305 1.12633 0.88957 0.84886 1.28763 0.93161 0.91982 1.06331 1.69071 1.13525 1.19090 1.35324 0.84863 0.80233 0.79768 0.73626 1.15710 1.18498 1.19078 0.91004 0.93102 0.93308 0.90625 0.90620 0.83624 0.84031 0.87006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.78 71.98 0.70 -2.55 15 2 C -0.06 -1.57 5.39 29.85 0.16 -1.41 15 3 C -0.18 -6.08 5.17 -19.57 -0.10 -6.18 15 4 C 0.00 -0.14 9.30 22.26 0.21 0.07 15 5 C -0.20 -8.67 5.75 -21.15 -0.12 -8.80 15 6 C 0.28 13.20 12.64 88.33 1.12 14.31 15 7 N -0.49 -23.82 18.23 19.00 0.35 -23.47 15 8 C 0.05 2.55 6.86 36.36 0.25 2.80 15 9 N -0.01 -0.35 4.98 -46.49 -0.23 -0.58 15 10 O -0.20 -9.90 19.12 3.51 0.07 -9.83 15 11 O -0.24 -12.91 16.85 3.52 0.06 -12.85 15 12 C -0.09 -4.13 8.23 22.57 0.19 -3.94 15 13 C 0.08 3.12 5.61 -21.26 -0.12 3.00 15 14 C -0.37 -13.27 8.39 24.94 0.21 -13.06 15 15 H 0.13 4.04 6.13 -2.91 -0.02 4.02 15 16 C 0.03 0.92 5.35 87.18 0.47 1.39 15 17 N -0.75 -29.07 10.97 23.20 0.25 -28.81 15 18 Si 1.00 25.22 29.66 68.60 2.04 27.25 15 19 H -0.24 -5.43 7.11 99.48 0.71 -4.72 15 20 H -0.26 -6.48 7.11 99.48 0.71 -5.77 15 21 H -0.27 -6.96 7.11 99.48 0.71 -6.25 15 22 H 0.07 1.28 8.14 -2.39 -0.02 1.26 15 23 H 0.05 1.23 7.30 -2.38 -0.02 1.22 15 24 H 0.05 1.12 8.14 -2.39 -0.02 1.10 15 25 H 0.08 1.70 8.05 -2.39 -0.02 1.68 15 26 H 0.08 1.95 7.05 -2.39 -0.02 1.93 15 27 H 0.15 4.34 8.06 -2.91 -0.02 4.31 15 28 H 0.14 6.60 5.60 -2.91 -0.02 6.58 15 29 H 0.32 10.82 8.27 -92.71 -0.77 10.06 15 Total: -1.00 -53.93 270.34 6.69 -47.24 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.20 Total: 15.42 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 2.96 Total: -14.36 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.37 Total: -52.87 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: 0.13 Total: -22.69 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: 2.04 Total: 27.25 kcal Total: -53.93 6.69 -47.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575645140.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.244 kcal (2) G-P(sol) polarization free energy of solvation -53.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds