Wall clock time and date at job start Mon Mar 30 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50705 * 109.47272 * 2 1 4 4 C 1.37539 * 119.41972 * 269.45714 * 3 2 1 5 5 C 1.41146 * 119.79031 * 179.97438 * 4 3 2 6 6 C 1.40185 * 120.62047 * 180.02562 * 5 4 3 7 7 H 1.08007 * 119.99804 * 204.83490 * 6 5 4 8 8 C 1.46506 * 120.00205 * 24.56228 * 6 5 4 9 9 N 1.29538 * 120.00127 * 15.30348 * 8 6 5 10 10 Si 1.86804 * 120.00047 * 195.31091 * 8 6 5 11 11 H 1.48499 * 109.47159 * 359.97438 * 10 8 6 12 12 H 1.48509 * 109.47088 * 119.99675 * 10 8 6 13 13 H 1.48496 * 109.47074 * 239.99329 * 10 8 6 14 14 C 1.46758 * 118.75835 * 0.27299 * 5 4 3 15 15 C 1.43204 * 120.56518 * 179.70164 * 14 5 4 16 16 N 6.87710 * 109.60598 * 1.23241 * 2 1 3 17 17 C 1.38989 * 118.87274 * 359.40722 * 14 5 4 18 18 C 1.38499 * 120.08901 * 0.62166 * 17 14 5 19 19 N 1.48025 * 119.33699 * 179.68763 * 18 17 14 20 20 O 1.31700 * 119.99879 * 143.03708 * 19 18 17 21 21 O 1.31699 * 119.99760 * 323.03149 * 19 18 17 22 22 H 1.08999 * 109.46850 * 299.99855 * 1 2 3 23 23 H 1.08998 * 109.46853 * 60.00105 * 1 2 3 24 24 H 1.08999 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47253 * 240.00496 * 2 1 3 26 26 H 1.08999 * 109.47190 * 120.00597 * 2 1 3 27 27 H 1.08006 * 120.10277 * 0.02562 * 4 3 2 28 28 H 0.96997 * 119.99987 * 184.78103 * 9 8 6 29 29 H 1.07999 * 119.95423 * 180.31015 * 17 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2683 2.0540 -1.1980 5 6 2.7384 3.3849 -1.2071 6 6 2.9841 4.0470 -2.4180 7 1 3.6897 4.8641 -2.4532 8 6 2.2884 3.6270 -3.6370 9 7 1.2460 2.8620 -3.5569 10 14 2.9045 4.1943 -5.3068 11 1 4.1018 5.0541 -5.1266 12 1 3.2633 3.0115 -6.1300 13 1 1.8380 4.9685 -5.9910 14 6 2.9703 4.0606 0.0748 15 6 3.4530 5.4084 0.1108 16 7 3.8376 6.4769 0.1393 17 6 2.7077 3.3723 1.2535 18 6 2.2477 2.0668 1.2074 19 7 1.9800 1.3471 2.4729 20 8 0.9595 0.5187 2.5561 21 8 2.7624 1.5351 3.5155 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.0936 1.5347 -2.1288 28 1 0.8268 2.5274 -4.3651 29 1 2.8675 3.8545 2.2065 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575645194.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:26 Heat of formation + Delta-G solvation = 32.939790 kcal Electronic energy + Delta-G solvation = -17049.274241 eV Core-core repulsion = 14133.356560 eV Total energy + Delta-G solvation = -2915.917681 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.66933 -38.87076 -37.33188 -36.26954 -35.33443 -34.36151 -32.52340 -30.65594 -28.91462 -25.94322 -25.29583 -23.15754 -22.31921 -20.16227 -19.66835 -18.73779 -17.55142 -17.17551 -16.90825 -16.07161 -15.82461 -14.92410 -14.82864 -14.64424 -14.45519 -14.13131 -13.83748 -13.67062 -13.38876 -13.06952 -12.93791 -12.66842 -12.42294 -12.08299 -11.97712 -11.80524 -11.75690 -11.47859 -11.43897 -11.26756 -10.15073 -9.77413 -9.29840 -7.04238 -1.16578 0.14602 0.58841 0.78559 1.33819 1.41225 1.55535 1.80439 2.00766 2.04512 2.33960 3.11351 3.20407 3.75611 3.91523 4.15639 4.40567 4.49932 4.55566 4.62280 4.75047 4.81232 4.97333 5.05249 5.17229 5.23145 5.40200 5.49102 5.61321 5.63988 5.94792 6.04168 6.24236 6.30066 6.66787 7.56469 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.022190 B = 0.008386 C = 0.006306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.538403 B = 3337.927727 C = 4439.047822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 C -0.015 4.015 4 C -0.148 4.148 5 C 0.101 3.899 6 C -0.338 4.338 7 H 0.106 0.894 8 C 0.033 3.967 9 N -0.708 5.708 10 Si 0.997 3.003 11 H -0.255 1.255 12 H -0.244 1.244 13 H -0.257 1.257 14 C -0.162 4.162 15 C 0.303 3.697 16 N -0.490 5.490 17 C 0.045 3.955 18 C -0.143 4.143 19 N 0.030 4.970 20 O -0.247 6.247 21 O -0.317 6.317 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.051 0.949 27 H 0.151 0.849 28 H 0.328 0.672 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.865 -2.651 -9.214 9.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.120 4.120 3 C -0.017 4.017 4 C -0.168 4.168 5 C 0.095 3.905 6 C -0.361 4.361 7 H 0.124 0.876 8 C -0.200 4.200 9 N -0.326 5.326 10 Si 0.814 3.186 11 H -0.179 1.179 12 H -0.167 1.167 13 H -0.181 1.181 14 C -0.169 4.169 15 C -0.008 4.008 16 N -0.169 5.169 17 C 0.021 3.979 18 C -0.239 4.239 19 N 0.471 4.529 20 O -0.423 6.423 21 O -0.476 6.476 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.106 0.894 26 H 0.070 0.930 27 H 0.168 0.832 28 H 0.142 0.858 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.408 -0.904 -9.498 9.550 hybrid contribution -0.112 -0.382 0.387 0.555 sum -0.520 -1.285 -9.112 9.216 Atomic orbital electron populations 1.21650 0.93165 1.02311 1.01779 1.20606 0.97969 0.91208 1.02184 1.19381 0.95488 0.96909 0.89945 1.21148 1.06264 0.93518 0.95839 1.18771 0.89629 0.91891 0.90203 1.22012 1.12728 1.09966 0.91410 0.87633 1.28553 0.92759 0.93238 1.05433 1.69003 1.10518 1.15888 1.37237 0.84870 0.80019 0.80349 0.73396 1.17857 1.16719 1.18074 1.16441 1.19466 0.87735 0.93275 1.25359 0.91524 0.92098 0.91847 1.81101 1.13924 1.12595 1.09267 1.20282 0.88944 0.90820 0.97804 1.19386 1.28818 0.95460 0.80238 1.50336 0.98924 0.99911 1.03750 1.96069 1.18170 1.36044 1.92057 1.96140 1.46418 1.75359 1.29697 0.93135 0.92511 0.91009 0.89369 0.93002 0.83172 0.85767 0.85255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 9.46 71.98 0.68 -3.61 15 2 C -0.08 -2.89 5.27 29.85 0.16 -2.73 15 3 C -0.02 -0.60 5.11 -19.94 -0.10 -0.70 15 4 C -0.15 -5.70 8.39 22.82 0.19 -5.51 15 5 C 0.10 4.04 5.77 -19.86 -0.11 3.92 15 6 C -0.34 -12.58 8.85 24.90 0.22 -12.36 15 7 H 0.11 3.89 7.44 -2.91 -0.02 3.87 15 8 C 0.03 1.07 5.36 87.19 0.47 1.54 15 9 N -0.71 -23.12 10.98 23.21 0.25 -22.86 15 10 Si 1.00 23.84 29.67 68.60 2.04 25.88 15 11 H -0.26 -6.47 7.11 99.48 0.71 -5.76 15 12 H -0.24 -5.36 7.11 99.48 0.71 -4.66 15 13 H -0.26 -6.04 7.11 99.48 0.71 -5.33 15 14 C -0.16 -6.59 5.93 -19.62 -0.12 -6.71 15 15 C 0.30 12.34 14.30 88.33 1.26 13.61 15 16 N -0.49 -20.58 18.54 19.01 0.35 -20.23 15 17 C 0.04 1.86 9.36 22.51 0.21 2.07 15 18 C -0.14 -6.23 6.55 36.53 0.24 -5.99 15 19 N 0.03 1.41 4.56 -46.10 -0.21 1.20 15 20 O -0.25 -11.50 15.06 3.51 0.05 -11.45 15 21 O -0.32 -15.78 19.64 3.52 0.07 -15.71 15 22 H 0.05 1.86 6.19 -2.39 -0.01 1.85 15 23 H 0.06 1.77 8.14 -2.39 -0.02 1.75 15 24 H 0.07 1.97 8.14 -2.39 -0.02 1.95 15 25 H 0.09 2.65 8.07 -2.39 -0.02 2.63 15 26 H 0.05 1.98 6.42 -2.39 -0.02 1.96 15 27 H 0.15 5.47 6.13 -2.91 -0.02 5.45 15 28 H 0.33 8.78 8.27 -92.71 -0.77 8.02 15 29 H 0.13 5.14 7.99 -2.91 -0.02 5.11 15 Total: -1.00 -49.69 270.92 6.85 -42.83 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 1.20 Total: 16.84 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 3.10 Total: -16.49 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.40 Total: -41.90 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: 0.12 Total: -27.16 kcal Atomic # 14 Polarization: 23.84 SS G_CDS: 2.04 Total: 25.88 kcal Total: -49.69 6.85 -42.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575645194.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.770 kcal (2) G-P(sol) polarization free energy of solvation -49.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds