Wall clock time and date at job start Mon Mar 30 2020 06:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47407 * 2 1 4 4 C 1.37549 * 120.10388 * 264.99983 * 3 2 1 5 5 C 1.38615 * 121.16460 * 179.97438 * 4 3 2 6 6 N 1.48016 * 119.33991 * 180.02562 * 5 4 3 7 7 O 1.31698 * 119.99785 * 179.97438 * 6 5 4 8 8 O 1.31704 * 120.00188 * 359.97438 * 6 5 4 9 9 C 1.38502 * 121.31614 * 0.02869 * 5 4 3 10 10 C 1.38982 * 120.09581 * 359.97417 * 9 5 4 11 11 C 1.43207 * 120.55972 * 179.97438 * 10 9 5 12 12 N 6.06071 * 103.36798 * 34.66067 * 2 1 3 13 13 C 1.41147 * 120.10473 * 85.23941 * 3 2 1 14 14 C 1.40186 * 120.62548 * 0.04694 * 13 3 2 15 15 H 1.07998 * 119.99920 * 42.43056 * 14 13 3 16 16 C 1.46506 * 119.99934 * 222.44486 * 14 13 3 17 17 N 1.29535 * 120.00228 * 19.65711 * 16 14 13 18 18 Si 1.86803 * 119.99877 * 199.66111 * 16 14 13 19 19 H 1.48500 * 109.47166 * 89.99729 * 18 16 14 20 20 H 1.48497 * 109.47031 * 209.99553 * 18 16 14 21 21 H 1.48501 * 109.47363 * 329.99773 * 18 16 14 22 22 H 1.08991 * 109.47744 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47129 * 300.00329 * 1 2 3 24 24 H 1.09000 * 109.47216 * 59.99830 * 1 2 3 25 25 H 1.09005 * 109.47208 * 240.00206 * 2 1 3 26 26 H 1.09000 * 109.47216 * 120.00169 * 2 1 3 27 27 H 1.07994 * 119.41601 * 359.97438 * 4 3 2 28 28 H 1.08005 * 119.94829 * 179.97438 * 9 5 4 29 29 H 0.97004 * 119.99929 * 182.98363 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3601 2.0367 -1.1854 5 6 2.8238 3.3428 -1.2110 6 7 3.1642 3.9662 -2.5096 7 8 3.6053 5.2065 -2.5491 8 8 3.0259 3.2807 -3.6256 9 6 2.9750 4.0760 -0.0458 10 6 2.6596 3.5062 1.1820 11 6 2.8126 4.2550 2.3930 12 7 2.9312 4.8501 3.3534 13 6 2.1728 2.1221 1.2169 14 6 1.8496 1.5094 2.4356 15 1 2.1441 0.4870 2.6208 16 6 1.1120 2.2560 3.4579 17 7 0.4343 3.3094 3.1278 18 14 1.1491 1.6888 5.2373 19 1 2.2862 2.3362 5.9396 20 1 -0.1233 2.0658 5.9036 21 1 1.3140 0.2137 5.2835 22 1 -0.3634 -1.0275 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.2544 1.4931 -2.1126 28 1 3.3385 5.0920 -0.0914 29 1 -0.0185 3.8284 3.8109 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575645911.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:46 Heat of formation + Delta-G solvation = 40.170479 kcal Electronic energy + Delta-G solvation = -17091.849904 eV Core-core repulsion = 14176.245769 eV Total energy + Delta-G solvation = -2915.604135 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.99010 -37.31099 -35.64069 -34.39245 -33.45890 -33.09798 -30.92838 -29.20703 -27.28869 -24.27553 -23.47477 -22.60720 -20.28875 -18.32353 -17.84374 -16.90452 -16.14284 -15.84663 -14.89155 -14.78236 -14.60917 -13.70253 -13.19299 -13.10115 -12.99226 -12.41272 -12.33495 -12.04576 -11.88044 -11.74125 -11.39877 -11.32566 -10.98238 -10.80008 -10.39375 -10.30361 -10.14725 -9.91902 -9.88856 -9.67810 -8.40943 -8.24612 -7.84412 -5.43431 0.48616 1.71267 2.18443 2.47500 2.56322 2.63104 2.69043 3.24315 3.54094 3.63867 3.95579 4.66519 4.91890 5.28347 5.57274 5.61678 5.81455 5.88757 5.94226 6.02222 6.05757 6.30599 6.33858 6.44555 6.61127 6.67692 6.78718 6.90877 7.08883 7.14066 7.41748 7.55224 7.78620 8.04758 8.48467 8.99073 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.024419 B = 0.008589 C = 0.006693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.382473 B = 3259.062035 C = 4182.371343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.059 4.059 3 C -0.156 4.156 4 C -0.018 4.018 5 C -0.122 4.122 6 N 0.036 4.964 7 O -0.281 6.281 8 O -0.277 6.277 9 C 0.030 3.970 10 C -0.113 4.113 11 C 0.310 3.690 12 N -0.478 5.478 13 C 0.149 3.851 14 C -0.369 4.369 15 H 0.117 0.883 16 C 0.063 3.937 17 N -0.697 5.697 18 Si 0.919 3.081 19 H -0.253 1.253 20 H -0.265 1.265 21 H -0.247 1.247 22 H 0.045 0.955 23 H 0.063 0.937 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.127 0.873 28 H 0.131 0.869 29 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.112 -7.093 3.411 8.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.096 4.096 3 C -0.159 4.159 4 C -0.038 4.038 5 C -0.220 4.220 6 N 0.476 4.524 7 O -0.448 6.448 8 O -0.445 6.445 9 C 0.007 3.993 10 C -0.119 4.119 11 C -0.002 4.002 12 N -0.156 5.156 13 C 0.143 3.857 14 C -0.393 4.393 15 H 0.135 0.865 16 C -0.171 4.171 17 N -0.315 5.315 18 Si 0.740 3.260 19 H -0.177 1.177 20 H -0.189 1.189 21 H -0.170 1.170 22 H 0.064 0.936 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.145 0.855 28 H 0.149 0.851 29 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.216 -6.122 5.215 8.342 hybrid contribution -0.118 0.095 -0.118 0.192 sum -2.333 -6.027 5.097 8.230 Atomic orbital electron populations 1.21693 0.95555 1.00398 1.02428 1.20188 0.95670 0.92112 1.01626 1.19711 1.07837 0.97690 0.90637 1.20289 0.93306 0.91410 0.98782 1.19322 1.26386 0.96267 0.79994 1.50130 0.96663 1.01556 1.04028 1.96150 1.54370 0.98174 1.96056 1.96136 1.64778 1.62923 1.20657 1.20408 0.91430 0.98227 0.89229 1.16640 1.13854 0.95652 0.85789 1.25062 0.91060 0.91700 0.92352 1.81012 1.12872 1.10832 1.10904 1.18410 0.86636 0.88243 0.92443 1.21446 1.22012 1.00176 0.95673 0.86548 1.27726 0.92706 0.93639 1.03059 1.68987 1.13084 1.10017 1.39427 0.86025 0.80229 0.81335 0.78433 1.17656 1.18948 1.16986 0.93573 0.91798 0.93288 0.92301 0.91047 0.85469 0.85110 0.87624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.89 37.15 0.37 -1.67 15 2 C -0.06 -0.87 5.61 -27.88 -0.16 -1.03 15 3 C -0.16 -2.83 5.20 -103.77 -0.54 -3.37 15 4 C -0.02 -0.35 9.13 -39.69 -0.36 -0.71 15 5 C -0.12 -2.63 6.89 -79.71 -0.55 -3.18 15 6 N 0.04 0.85 4.98 34.08 0.17 1.02 15 7 O -0.28 -6.90 19.09 -31.57 -0.60 -7.51 15 8 O -0.28 -6.68 19.07 -31.57 -0.60 -7.28 15 9 C 0.03 0.63 9.26 -39.21 -0.36 0.26 15 10 C -0.11 -2.35 5.63 -104.25 -0.59 -2.93 15 11 C 0.31 6.68 11.70 -22.47 -0.26 6.41 15 12 N -0.48 -10.58 18.45 41.84 0.77 -9.81 15 13 C 0.15 2.93 5.50 -104.62 -0.57 2.35 15 14 C -0.37 -6.89 8.03 -35.52 -0.29 -7.18 15 15 H 0.12 1.94 7.00 -52.49 -0.37 1.57 15 16 C 0.06 1.18 4.31 -15.19 -0.07 1.12 15 17 N -0.70 -14.01 11.20 55.98 0.63 -13.39 15 18 Si 0.92 14.60 29.68 -169.99 -5.05 9.56 15 19 H -0.25 -4.32 7.11 56.52 0.40 -3.92 15 20 H -0.27 -4.14 7.11 56.52 0.40 -3.74 15 21 H -0.25 -3.66 7.11 56.52 0.40 -3.26 15 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 15 23 H 0.06 1.01 8.04 -51.93 -0.42 0.59 15 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 15 25 H 0.06 0.78 8.05 -51.93 -0.42 0.36 15 26 H 0.07 1.00 6.74 -51.93 -0.35 0.65 15 27 H 0.13 2.31 7.49 -52.49 -0.39 1.92 15 28 H 0.13 2.63 7.53 -52.48 -0.39 2.23 15 29 H 0.31 5.80 8.27 -40.82 -0.34 5.47 15 LS Contribution 274.35 15.07 4.13 4.13 Total: -1.00 -24.65 274.35 -6.25 -30.90 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -2.32 Total: 2.29 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -3.38 Total: -9.92 kcal Atomic # 7 Polarization: -23.74 SS G_CDS: 1.57 Total: -22.17 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -1.20 Total: -14.79 kcal Atomic # 14 Polarization: 14.60 SS G_CDS: -5.05 Total: 9.56 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -24.65 -6.25 -30.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575645911.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.068 kcal (2) G-P(sol) polarization free energy of solvation -24.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds