Wall clock time and date at job start Mon Mar 30 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47407 * 2 1 4 4 C 1.37549 * 120.10388 * 264.99983 * 3 2 1 5 5 C 1.38615 * 121.16460 * 179.97438 * 4 3 2 6 6 N 1.48016 * 119.33991 * 180.02562 * 5 4 3 7 7 O 1.31698 * 119.99785 * 179.97438 * 6 5 4 8 8 O 1.31704 * 120.00188 * 359.97438 * 6 5 4 9 9 C 1.38502 * 121.31614 * 0.02869 * 5 4 3 10 10 C 1.38982 * 120.09581 * 359.97417 * 9 5 4 11 11 C 1.43207 * 120.55972 * 179.97438 * 10 9 5 12 12 N 6.06071 * 103.36798 * 34.66067 * 2 1 3 13 13 C 1.41147 * 120.10473 * 85.23941 * 3 2 1 14 14 C 1.40186 * 120.62548 * 0.04694 * 13 3 2 15 15 H 1.07998 * 119.99920 * 42.43056 * 14 13 3 16 16 C 1.46506 * 119.99934 * 222.44486 * 14 13 3 17 17 N 1.29535 * 120.00228 * 19.65711 * 16 14 13 18 18 Si 1.86803 * 119.99877 * 199.66111 * 16 14 13 19 19 H 1.48500 * 109.47166 * 89.99729 * 18 16 14 20 20 H 1.48497 * 109.47031 * 209.99553 * 18 16 14 21 21 H 1.48501 * 109.47363 * 329.99773 * 18 16 14 22 22 H 1.08991 * 109.47744 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47129 * 300.00329 * 1 2 3 24 24 H 1.09000 * 109.47216 * 59.99830 * 1 2 3 25 25 H 1.09005 * 109.47208 * 240.00206 * 2 1 3 26 26 H 1.09000 * 109.47216 * 120.00169 * 2 1 3 27 27 H 1.07994 * 119.41601 * 359.97438 * 4 3 2 28 28 H 1.08005 * 119.94829 * 179.97438 * 9 5 4 29 29 H 0.97004 * 119.99929 * 182.98363 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3601 2.0367 -1.1854 5 6 2.8238 3.3428 -1.2110 6 7 3.1642 3.9662 -2.5096 7 8 3.6053 5.2065 -2.5491 8 8 3.0259 3.2807 -3.6256 9 6 2.9750 4.0760 -0.0458 10 6 2.6596 3.5062 1.1820 11 6 2.8126 4.2550 2.3930 12 7 2.9312 4.8501 3.3534 13 6 2.1728 2.1221 1.2169 14 6 1.8496 1.5094 2.4356 15 1 2.1441 0.4870 2.6208 16 6 1.1120 2.2560 3.4579 17 7 0.4343 3.3094 3.1278 18 14 1.1491 1.6888 5.2373 19 1 2.2862 2.3362 5.9396 20 1 -0.1233 2.0658 5.9036 21 1 1.3140 0.2137 5.2835 22 1 -0.3634 -1.0275 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.2544 1.4931 -2.1126 28 1 3.3385 5.0920 -0.0914 29 1 -0.0185 3.8284 3.8109 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575645911.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:45 Heat of formation + Delta-G solvation = 29.047272 kcal Electronic energy + Delta-G solvation = -17092.332243 eV Core-core repulsion = 14176.245769 eV Total energy + Delta-G solvation = -2916.086473 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.56480 -38.93409 -37.32010 -36.00230 -34.99665 -34.66380 -32.53188 -30.62380 -28.92014 -25.90908 -24.93165 -24.05622 -21.80400 -19.89069 -19.42524 -18.54232 -17.67682 -17.45822 -16.45105 -16.41590 -16.08908 -15.02759 -14.70762 -14.53212 -14.35988 -14.00340 -13.95449 -13.62239 -13.32645 -13.15432 -12.80478 -12.72903 -12.38461 -12.06208 -11.89471 -11.79444 -11.64071 -11.49010 -11.45931 -11.36759 -9.97976 -9.86029 -9.38849 -7.01261 -1.30070 0.13170 0.62424 0.87692 1.25766 1.36269 1.46421 1.87902 1.90856 2.04304 2.36609 3.01957 3.23472 3.79519 4.11369 4.20437 4.33196 4.44750 4.55662 4.67985 4.77177 4.81284 5.05652 5.11095 5.25403 5.28871 5.39744 5.52071 5.61721 5.66047 5.86058 5.97775 6.20462 6.35847 6.74129 7.44537 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.024419 B = 0.008589 C = 0.006693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.382473 B = 3259.062035 C = 4182.371343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.061 4.061 3 C -0.126 4.126 4 C -0.042 4.042 5 C -0.119 4.119 6 N 0.041 4.959 7 O -0.354 6.354 8 O -0.330 6.330 9 C 0.025 3.975 10 C -0.112 4.112 11 C 0.313 3.687 12 N -0.489 5.489 13 C 0.109 3.891 14 C -0.319 4.319 15 H 0.152 0.848 16 C 0.029 3.971 17 N -0.710 5.710 18 Si 0.972 3.028 19 H -0.272 1.272 20 H -0.261 1.261 21 H -0.217 1.217 22 H 0.075 0.925 23 H 0.047 0.953 24 H 0.039 0.961 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.135 0.865 28 H 0.127 0.873 29 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.375 -10.369 6.876 12.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 C -0.129 4.129 4 C -0.062 4.062 5 C -0.223 4.223 6 N 0.457 4.543 7 O -0.502 6.502 8 O -0.483 6.483 9 C 0.001 3.999 10 C -0.119 4.119 11 C 0.001 3.999 12 N -0.168 5.168 13 C 0.103 3.897 14 C -0.342 4.342 15 H 0.169 0.831 16 C -0.204 4.204 17 N -0.328 5.328 18 Si 0.789 3.211 19 H -0.197 1.197 20 H -0.185 1.185 21 H -0.138 1.138 22 H 0.094 0.906 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.153 0.847 28 H 0.145 0.855 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.429 -9.301 8.476 13.043 hybrid contribution 0.033 0.865 -0.495 0.997 sum -3.396 -8.437 7.981 12.100 Atomic orbital electron populations 1.21662 0.94851 1.01986 1.01237 1.20370 0.96064 0.89759 1.03665 1.20099 1.04656 0.98818 0.89319 1.20394 0.95128 0.90871 0.99810 1.19655 1.26225 0.97132 0.79271 1.50214 0.98267 1.01415 1.04412 1.96099 1.58334 0.99493 1.96247 1.96071 1.67452 1.63146 1.21617 1.20428 0.91813 0.98216 0.89394 1.16782 1.13741 0.96156 0.85208 1.25208 0.90744 0.91564 0.92357 1.81016 1.13388 1.10907 1.11487 1.18688 0.89259 0.88010 0.93733 1.22243 1.16319 1.01368 0.94254 0.83081 1.28577 0.92201 0.93400 1.06231 1.69018 1.12623 1.10127 1.41074 0.85237 0.79534 0.82573 0.73711 1.19682 1.18514 1.13821 0.90648 0.93374 0.94139 0.90289 0.89099 0.84711 0.85513 0.86801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.89 71.98 0.71 -2.69 15 2 C -0.06 -1.54 5.61 29.85 0.17 -1.37 15 3 C -0.13 -4.22 5.20 -19.31 -0.10 -4.32 15 4 C -0.04 -1.62 9.13 22.20 0.20 -1.41 15 5 C -0.12 -5.30 6.89 36.53 0.25 -5.05 15 6 N 0.04 2.11 4.98 -46.10 -0.23 1.88 15 7 O -0.35 -19.09 19.09 3.52 0.07 -19.03 15 8 O -0.33 -17.12 19.07 3.51 0.07 -17.06 15 9 C 0.02 1.06 9.26 22.51 0.21 1.27 15 10 C -0.11 -4.51 5.63 -19.62 -0.11 -4.63 15 11 C 0.31 13.01 11.70 88.33 1.03 14.05 15 12 N -0.49 -20.88 18.45 19.01 0.35 -20.53 15 13 C 0.11 3.97 5.50 -19.86 -0.11 3.86 15 14 C -0.32 -10.28 8.03 24.90 0.20 -10.08 15 15 H 0.15 3.92 7.00 -2.91 -0.02 3.90 15 16 C 0.03 0.97 4.31 87.19 0.38 1.35 15 17 N -0.71 -26.27 11.20 23.21 0.26 -26.01 15 18 Si 0.97 25.50 29.68 68.60 2.04 27.53 15 19 H -0.27 -8.10 7.11 99.48 0.71 -7.39 15 20 H -0.26 -6.76 7.11 99.48 0.71 -6.06 15 21 H -0.22 -4.75 7.11 99.48 0.71 -4.04 15 22 H 0.07 1.42 8.14 -2.39 -0.02 1.40 15 23 H 0.05 1.31 8.04 -2.39 -0.02 1.29 15 24 H 0.04 1.05 8.14 -2.39 -0.02 1.03 15 25 H 0.08 1.75 8.05 -2.38 -0.02 1.73 15 26 H 0.09 1.96 6.74 -2.39 -0.02 1.94 15 27 H 0.14 4.91 7.49 -2.91 -0.02 4.89 15 28 H 0.13 5.40 7.53 -2.91 -0.02 5.37 15 29 H 0.32 10.95 8.27 -92.71 -0.77 10.19 15 Total: -1.00 -54.58 274.35 6.58 -48.00 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 1.20 Total: 14.24 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 2.83 Total: -9.02 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.38 Total: -44.67 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: 0.13 Total: -36.08 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: 2.04 Total: 27.53 kcal Total: -54.58 6.58 -48.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575645911.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.048 kcal (2) G-P(sol) polarization free energy of solvation -54.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds