Wall clock time and date at job start Mon Mar 30 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47059 * 2 1 4 4 C 1.38515 * 119.78135 * 99.99766 * 3 2 1 5 5 C 1.37533 * 120.47365 * 180.02562 * 4 3 2 6 6 N 1.48016 * 120.00408 * 180.02562 * 5 4 3 7 7 O 1.31702 * 119.99831 * 353.95687 * 6 5 4 8 8 O 1.31699 * 119.99879 * 173.96249 * 6 5 4 9 9 C 1.41345 * 119.99687 * 0.02562 * 5 4 3 10 10 C 1.40393 * 120.22083 * 180.02562 * 9 5 4 11 11 H 1.08002 * 119.99925 * 322.12923 * 10 9 5 12 12 C 1.46540 * 119.99894 * 142.12351 * 10 9 5 13 13 N 1.29505 * 119.99884 * 349.90713 * 12 10 9 14 14 Si 1.86798 * 119.99936 * 169.90334 * 12 10 9 15 15 H 1.48499 * 109.46920 * 90.00039 * 14 12 10 16 16 H 1.48498 * 109.47218 * 210.00419 * 14 12 10 17 17 H 1.48501 * 109.47228 * 330.00604 * 14 12 10 18 18 C 1.41037 * 119.56263 * 0.02562 * 9 5 4 19 19 C 1.38905 * 119.53779 * 359.97438 * 18 9 5 20 20 C 1.43200 * 120.00671 * 180.02562 * 19 18 9 21 21 N 3.55370 * 85.82796 * 287.34872 * 2 1 3 22 22 H 1.08999 * 109.47083 * 299.99972 * 1 2 3 23 23 H 1.09000 * 109.47026 * 60.00516 * 1 2 3 24 24 H 1.09003 * 109.47061 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47083 * 240.00028 * 2 1 3 26 26 H 1.08997 * 109.46966 * 120.00012 * 2 1 3 27 27 H 1.08007 * 119.76530 * 359.74365 * 4 3 2 28 28 H 0.97002 * 119.99526 * 179.97438 * 13 12 10 29 29 H 1.08002 * 120.23062 * 180.02562 * 18 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4585 1.9999 1.1840 5 6 2.9191 3.2957 1.2004 6 7 3.3724 3.9040 2.4714 7 8 3.2245 3.2491 3.6044 8 8 3.9235 5.1001 2.4692 9 6 2.9596 4.0465 0.0036 10 6 3.4294 5.3694 0.0149 11 1 3.1965 6.0181 0.8464 12 6 4.2359 5.8701 -1.1015 13 7 4.6799 5.0488 -1.9990 14 14 4.6233 7.6929 -1.2301 15 1 5.8898 7.9817 -0.5106 16 1 4.7693 8.0683 -2.6594 17 1 3.5188 8.4778 -0.6225 18 6 2.5249 3.4579 -1.2022 19 6 2.0632 2.1479 -1.1972 20 6 1.6200 1.5402 -2.4158 21 7 1.2715 1.0569 -3.3830 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.4245 1.4313 2.1016 28 1 5.2134 5.3803 -2.7382 29 1 2.5515 4.0216 -2.1230 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575646010.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:55 Heat of formation + Delta-G solvation = 31.243486 kcal Electronic energy + Delta-G solvation = -17046.700759 eV Core-core repulsion = 14130.709521 eV Total energy + Delta-G solvation = -2915.991238 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.72767 -38.66139 -37.36433 -36.55243 -34.65214 -34.36286 -32.38616 -31.34876 -28.14693 -26.78936 -24.49234 -23.62380 -22.01270 -20.58312 -19.10908 -18.31424 -18.09040 -16.99859 -16.46411 -16.08497 -15.52001 -15.16957 -14.92295 -14.68305 -14.53241 -14.08377 -13.98353 -13.83220 -13.37968 -13.15471 -13.10834 -12.76516 -12.50498 -12.05637 -11.86476 -11.75955 -11.48190 -11.40081 -11.14892 -11.02181 -10.11891 -9.79828 -9.43806 -6.99614 -1.17825 0.26234 0.60179 1.27836 1.32745 1.39529 1.53644 1.63467 1.90445 2.07520 2.32099 2.91590 2.97469 3.88047 3.90216 4.18286 4.33723 4.45087 4.50622 4.54092 4.69898 4.79886 4.93114 5.06541 5.11737 5.21415 5.36769 5.46280 5.48959 5.68531 5.86012 5.90844 6.16904 6.45117 6.82067 7.44347 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.019151 B = 0.009457 C = 0.006567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.679929 B = 2960.028501 C = 4262.879768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.072 4.072 3 C -0.115 4.115 4 C -0.050 4.050 5 C -0.082 4.082 6 N 0.032 4.968 7 O -0.429 6.429 8 O -0.350 6.350 9 C 0.036 3.964 10 C -0.258 4.258 11 H 0.122 0.878 12 C 0.020 3.980 13 N -0.702 5.702 14 Si 1.003 2.997 15 H -0.260 1.260 16 H -0.237 1.237 17 H -0.247 1.247 18 C -0.029 4.029 19 C -0.015 4.015 20 C 0.289 3.711 21 N -0.452 5.452 22 H 0.057 0.943 23 H 0.041 0.959 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.131 0.869 28 H 0.332 0.668 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.355 -0.080 -7.030 7.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 C -0.120 4.120 4 C -0.069 4.069 5 C -0.192 4.192 6 N 0.422 4.578 7 O -0.552 6.552 8 O -0.491 6.491 9 C 0.031 3.969 10 C -0.287 4.287 11 H 0.139 0.861 12 C -0.212 4.212 13 N -0.324 5.324 14 Si 0.819 3.181 15 H -0.185 1.185 16 H -0.160 1.160 17 H -0.170 1.170 18 C -0.052 4.052 19 C -0.019 4.019 20 C -0.025 4.025 21 N -0.129 5.129 22 H 0.076 0.924 23 H 0.060 0.940 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.149 0.851 28 H 0.147 0.853 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.822 -1.086 -8.616 9.131 hybrid contribution 0.653 0.892 1.061 1.532 sum -2.169 -0.194 -7.555 7.863 Atomic orbital electron populations 1.21742 0.94213 1.02460 1.01586 1.20434 0.96611 0.90584 1.03287 1.19395 1.05557 0.97566 0.89519 1.20189 0.96569 0.91512 0.98593 1.20532 1.20699 0.95638 0.82284 1.49694 1.02773 1.01967 1.03325 1.96012 1.74523 1.65551 1.19163 1.95960 1.53720 1.04499 1.94909 1.17330 0.96429 0.93714 0.89467 1.22961 1.09599 0.94698 1.01418 0.86050 1.28828 0.93500 1.07066 0.91798 1.68937 1.15042 1.41608 1.06791 0.84837 0.80746 0.72014 0.80528 1.18464 1.15981 1.16974 1.21595 0.93890 0.92592 0.97083 1.15807 1.05044 0.93731 0.87306 1.25510 0.92366 0.92394 0.92203 1.81163 1.10723 1.09583 1.11398 0.92404 0.93991 0.90603 0.91290 0.89509 0.85135 0.85274 0.83558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.84 71.98 0.71 -2.81 15 2 C -0.07 -1.97 5.54 29.85 0.17 -1.80 15 3 C -0.11 -3.97 5.20 -19.35 -0.10 -4.07 15 4 C -0.05 -2.04 9.16 22.17 0.20 -1.83 15 5 C -0.08 -3.95 6.93 36.97 0.26 -3.70 15 6 N 0.03 1.79 4.98 -45.04 -0.22 1.57 15 7 O -0.43 -25.30 19.15 3.51 0.07 -25.23 15 8 O -0.35 -20.16 16.29 3.52 0.06 -20.10 15 9 C 0.04 1.57 5.47 -21.30 -0.12 1.45 15 10 C -0.26 -11.04 7.71 24.96 0.19 -10.85 15 11 H 0.12 5.57 6.06 -2.91 -0.02 5.55 15 12 C 0.02 0.72 5.39 87.20 0.47 1.19 15 13 N -0.70 -24.48 11.62 23.21 0.27 -24.21 15 14 Si 1.00 26.88 29.65 68.60 2.03 28.92 15 15 H -0.26 -7.41 7.11 99.48 0.71 -6.70 15 16 H -0.24 -5.35 7.11 99.48 0.71 -4.64 15 17 H -0.25 -6.74 7.11 99.48 0.71 -6.03 15 18 C -0.03 -1.08 8.40 23.12 0.19 -0.88 15 19 C -0.01 -0.51 5.72 -21.42 -0.12 -0.63 15 20 C 0.29 9.60 13.15 88.33 1.16 10.76 15 21 N -0.45 -15.53 18.54 19.00 0.35 -15.18 15 22 H 0.06 1.44 8.14 -2.39 -0.02 1.42 15 23 H 0.04 1.10 7.36 -2.39 -0.02 1.08 15 24 H 0.08 1.52 8.14 -2.39 -0.02 1.50 15 25 H 0.07 1.82 7.46 -2.39 -0.02 1.81 15 26 H 0.09 2.15 7.99 -2.39 -0.02 2.13 15 27 H 0.13 5.27 7.53 -2.91 -0.02 5.25 15 28 H 0.33 9.52 8.27 -92.71 -0.77 8.75 15 29 H 0.15 5.11 6.97 -2.91 -0.02 5.09 15 Total: -1.00 -58.97 271.98 6.77 -52.20 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 1.20 Total: 15.21 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 3.01 Total: -13.18 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.40 Total: -37.82 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: 0.12 Total: -45.33 kcal Atomic # 14 Polarization: 26.88 SS G_CDS: 2.03 Total: 28.92 kcal Total: -58.97 6.77 -52.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646010.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.441 kcal (2) G-P(sol) polarization free energy of solvation -58.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds