Wall clock time and date at job start Mon Mar 30 2020 06:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50695 * 109.47221 * 2 1 4 4 C 1.38498 * 119.95150 * 264.97866 * 3 2 1 5 5 C 1.38613 * 121.32026 * 180.02562 * 4 3 2 6 6 N 1.48018 * 119.41840 * 179.97438 * 5 4 3 7 7 O 1.31701 * 120.00029 * 359.97438 * 6 5 4 8 8 O 1.31698 * 119.99827 * 179.97438 * 6 5 4 9 9 C 1.37552 * 121.16521 * 359.97438 * 5 4 3 10 10 C 1.41150 * 119.78662 * 359.72881 * 9 5 4 11 11 C 1.40189 * 120.61987 * 180.26117 * 10 9 5 12 12 H 1.08004 * 119.99459 * 205.64694 * 11 10 9 13 13 C 1.46503 * 119.99929 * 25.64091 * 11 10 9 14 14 N 1.29531 * 120.00262 * 11.64709 * 13 11 10 15 15 Si 1.86799 * 120.00035 * 191.64092 * 13 11 10 16 16 H 1.48508 * 109.47020 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47102 * 120.00218 * 15 13 11 18 18 H 1.48501 * 109.47278 * 240.00591 * 15 13 11 19 19 C 1.38977 * 119.95451 * 85.00172 * 3 2 1 20 20 C 1.43201 * 120.56315 * 359.97438 * 19 3 2 21 21 N 3.56490 * 90.47839 * 73.98856 * 2 1 3 22 22 H 1.09002 * 109.46910 * 59.99718 * 1 2 3 23 23 H 1.08991 * 109.47507 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47259 * 300.00474 * 1 2 3 25 25 H 1.08996 * 109.46821 * 239.99673 * 2 1 3 26 26 H 1.08997 * 109.46465 * 120.00121 * 2 1 3 27 27 H 1.08006 * 119.34020 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.10450 * 179.97438 * 9 5 4 29 29 H 0.96995 * 120.00222 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3619 2.0377 -1.1954 5 6 2.8271 3.3430 -1.2283 6 7 3.1674 3.9609 -2.5296 7 8 3.0278 3.2711 -3.6428 8 8 3.6099 5.2006 -2.5742 9 6 2.9780 4.0743 -0.0731 10 6 2.6503 3.4947 1.1715 11 6 2.7923 4.2259 2.3591 12 1 2.9490 3.7103 3.2951 13 6 2.7281 5.6892 2.3305 14 7 2.3196 6.2989 1.2631 15 14 3.2352 6.6760 3.8333 16 1 3.6605 5.7496 4.9133 17 1 4.3641 7.5733 3.4785 18 1 2.0849 7.4894 4.3028 19 6 2.1648 2.1100 1.1996 20 6 1.8269 1.4819 2.4413 21 7 1.5598 0.9833 3.4265 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.2551 1.4904 -2.1204 28 1 3.3423 5.0900 -0.1187 29 1 2.2768 7.2677 1.2443 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575646287.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:58 Heat of formation + Delta-G solvation = 44.531842 kcal Electronic energy + Delta-G solvation = -16938.763931 eV Core-core repulsion = 14023.348919 eV Total energy + Delta-G solvation = -2915.415012 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.07252 -37.61143 -35.41257 -34.90516 -33.61258 -33.18496 -30.99848 -29.13797 -26.18436 -26.00366 -23.53735 -21.72298 -20.66316 -18.13415 -17.79387 -17.24527 -16.83350 -15.68795 -15.13662 -14.86611 -14.08798 -13.49797 -13.41188 -13.22268 -13.05213 -12.30846 -12.16423 -11.96057 -11.78282 -11.69197 -11.42799 -11.26680 -10.96695 -10.88338 -10.68843 -10.57436 -10.25928 -10.18793 -9.98734 -9.96874 -8.37718 -8.23424 -7.68203 -5.18229 0.14760 1.85962 2.08330 2.14752 2.65732 2.71972 2.74714 3.34864 3.59465 3.61489 4.00980 4.78311 4.99141 5.18406 5.34811 5.68055 5.75708 5.81999 5.94682 6.04088 6.12904 6.14143 6.30214 6.35984 6.50267 6.63140 6.76871 6.99342 7.17759 7.23785 7.56325 7.68577 7.76294 7.93944 8.48455 9.16971 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.015272 B = 0.010596 C = 0.006518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.942758 B = 2641.877453 C = 4294.999120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C 0.026 3.974 4 C -0.232 4.232 5 C 0.051 3.949 6 N -0.007 5.007 7 O -0.208 6.208 8 O -0.195 6.195 9 C -0.087 4.087 10 C 0.125 3.875 11 C -0.389 4.389 12 H 0.103 0.897 13 C 0.063 3.937 14 N -0.723 5.723 15 Si 0.933 3.067 16 H -0.249 1.249 17 H -0.259 1.259 18 H -0.262 1.262 19 C -0.168 4.168 20 C 0.298 3.702 21 N -0.490 5.490 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.126 0.874 28 H 0.159 0.841 29 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.118 -1.283 0.541 1.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C 0.023 3.977 4 C -0.252 4.252 5 C -0.035 4.035 6 N 0.467 4.533 7 O -0.397 6.397 8 O -0.387 6.387 9 C -0.108 4.108 10 C 0.119 3.881 11 C -0.414 4.414 12 H 0.121 0.879 13 C -0.169 4.169 14 N -0.342 5.342 15 Si 0.754 3.246 16 H -0.172 1.172 17 H -0.183 1.183 18 H -0.187 1.187 19 C -0.174 4.174 20 C -0.012 4.012 21 N -0.169 5.169 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.144 0.856 28 H 0.176 0.824 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.748 -2.094 2.458 3.314 hybrid contribution 0.343 1.000 -0.406 1.133 sum -0.405 -1.094 2.051 2.360 Atomic orbital electron populations 1.21705 0.94746 1.01187 1.02445 1.20550 0.96306 0.92928 1.02487 1.19073 0.93988 0.94168 0.90492 1.19666 1.14187 0.93303 0.98094 1.20303 1.08979 0.94872 0.79391 1.50847 0.95690 1.01797 1.04967 1.96169 1.60376 1.61899 1.21301 1.96209 1.48996 0.97478 1.96040 1.21640 0.99094 1.01067 0.89022 1.18119 0.89259 0.88941 0.91808 1.21225 1.35146 0.89782 0.95233 0.87895 1.27785 0.91584 0.98594 0.98898 1.68999 1.22916 1.13539 1.28724 0.85801 0.79862 0.79313 0.79662 1.17210 1.18348 1.18679 1.16698 1.18139 0.96573 0.85968 1.25415 0.91853 0.91640 0.92309 1.81072 1.13629 1.11088 1.11080 0.92243 0.92787 0.92643 0.90798 0.91391 0.85593 0.82401 0.87893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.90 37.16 0.37 -1.70 15 2 C -0.09 -1.33 5.58 -27.88 -0.16 -1.48 15 3 C 0.03 0.50 5.16 -104.25 -0.54 -0.04 15 4 C -0.23 -4.61 9.17 -39.35 -0.36 -4.97 15 5 C 0.05 1.12 6.86 -80.06 -0.55 0.57 15 6 N -0.01 -0.16 4.98 33.91 0.17 0.01 15 7 O -0.21 -4.65 19.08 -31.57 -0.60 -5.25 15 8 O -0.20 -4.53 19.09 -31.57 -0.60 -5.14 15 9 C -0.09 -1.94 8.29 -38.73 -0.32 -2.26 15 10 C 0.12 2.75 5.78 -104.62 -0.60 2.15 15 11 C -0.39 -8.36 8.85 -35.52 -0.31 -8.67 15 12 H 0.10 2.19 7.45 -52.48 -0.39 1.80 15 13 C 0.06 1.24 5.43 -15.19 -0.08 1.16 15 14 N -0.72 -14.83 10.85 55.98 0.61 -14.23 15 15 Si 0.93 14.88 29.66 -169.99 -5.04 9.84 15 16 H -0.25 -4.05 7.11 56.52 0.40 -3.64 15 17 H -0.26 -4.03 7.11 56.52 0.40 -3.63 15 18 H -0.26 -4.13 7.11 56.52 0.40 -3.73 15 19 C -0.17 -3.48 5.93 -104.25 -0.62 -4.10 15 20 C 0.30 6.21 12.67 -22.47 -0.28 5.93 15 21 N -0.49 -10.51 18.54 41.84 0.78 -9.74 15 22 H 0.06 0.84 8.14 -51.93 -0.42 0.41 15 23 H 0.05 0.66 8.14 -51.93 -0.42 0.23 15 24 H 0.05 0.88 7.94 -51.93 -0.41 0.46 15 25 H 0.07 1.01 8.05 -51.93 -0.42 0.59 15 26 H 0.07 1.07 7.28 -51.93 -0.38 0.69 15 27 H 0.13 2.35 7.49 -52.48 -0.39 1.95 15 28 H 0.16 3.63 5.54 -52.49 -0.29 3.34 15 29 H 0.31 5.54 8.27 -40.82 -0.34 5.20 15 LS Contribution 275.41 15.07 4.15 4.15 Total: -1.00 -23.85 275.41 -6.27 -30.12 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -2.26 Total: 3.67 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -3.46 Total: -13.43 kcal Atomic # 7 Polarization: -25.50 SS G_CDS: 1.55 Total: -23.95 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -1.20 Total: -10.39 kcal Atomic # 14 Polarization: 14.88 SS G_CDS: -5.04 Total: 9.84 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -23.85 -6.27 -30.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646287.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.649 kcal (2) G-P(sol) polarization free energy of solvation -23.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds