Wall clock time and date at job start Mon Mar 30 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50701 * 109.46890 * 2 1 4 4 C 1.37539 * 119.41859 * 269.97775 * 3 2 1 5 5 C 1.41152 * 119.79111 * 179.75150 * 4 3 2 6 6 C 1.40179 * 120.62520 * 180.26008 * 5 4 3 7 7 H 1.07999 * 120.00304 * 154.89382 * 6 5 4 8 8 C 1.46510 * 120.00044 * 334.89975 * 6 5 4 9 9 N 1.29526 * 120.00166 * 161.19399 * 8 6 5 10 10 Si 1.86802 * 119.99949 * 341.19399 * 8 6 5 11 11 H 1.48498 * 109.46913 * 94.20847 * 10 8 6 12 12 H 1.48493 * 109.47067 * 214.20816 * 10 8 6 13 13 H 1.48499 * 109.47021 * 334.21342 * 10 8 6 14 14 C 1.46772 * 118.75354 * 0.56298 * 5 4 3 15 15 C 1.43194 * 120.56050 * 179.69772 * 14 5 4 16 16 N 6.87710 * 109.50249 * 1.22952 * 2 1 3 17 17 C 1.38983 * 118.86963 * 359.41981 * 14 5 4 18 18 N 1.48017 * 119.94684 * 180.27602 * 17 14 5 19 19 O 1.31704 * 120.00009 * 180.02562 * 18 17 14 20 20 O 1.31697 * 120.00334 * 359.97438 * 18 17 14 21 21 C 1.38495 * 120.09881 * 0.29912 * 17 14 5 22 22 H 1.09005 * 109.46665 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47189 * 299.99253 * 1 2 3 24 24 H 1.08998 * 109.46845 * 60.00011 * 1 2 3 25 25 H 1.08992 * 109.46950 * 240.00022 * 2 1 3 26 26 H 1.08998 * 109.46845 * 119.99989 * 2 1 3 27 27 H 1.07999 * 120.10427 * 0.02562 * 4 3 2 28 28 H 0.97006 * 120.00500 * 179.97438 * 9 8 6 29 29 H 1.07998 * 119.34192 * 179.97438 * 21 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2580 2.0576 -1.1980 5 6 2.7234 3.3902 -1.2072 6 6 2.9540 4.0577 -2.4181 7 1 2.9102 5.1361 -2.4571 8 6 3.2542 3.2925 -3.6309 9 7 3.1100 3.8412 -4.7952 10 14 3.8450 1.5253 -3.4979 11 1 2.6846 0.6057 -3.6113 12 1 4.8096 1.2423 -4.5908 13 1 4.5103 1.3233 -2.1857 14 6 2.9678 4.0615 0.0749 15 6 3.4463 5.4107 0.1107 16 7 3.8260 6.4810 0.1391 17 6 2.7214 3.3674 1.2535 18 7 2.9539 4.0235 2.5598 19 8 2.7212 3.3666 3.6773 20 8 3.3944 5.2639 2.6046 21 6 2.2592 2.0627 1.2075 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 2.0753 1.5412 -2.1288 28 1 3.3091 3.3347 -5.5982 29 1 2.0722 1.5347 2.1308 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575646915.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:29 Heat of formation + Delta-G solvation = 52.190145 kcal Electronic energy + Delta-G solvation = -17071.982936 eV Core-core repulsion = 14156.900013 eV Total energy + Delta-G solvation = -2915.082923 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.29863 -37.68213 -35.62280 -34.56710 -33.74582 -33.43411 -31.56377 -29.40040 -26.49968 -25.76093 -23.89842 -21.63797 -20.75463 -18.68061 -18.13039 -17.43287 -16.55334 -15.72810 -15.35721 -15.06280 -14.40682 -13.83466 -13.46843 -13.22281 -12.91613 -12.67261 -12.36379 -12.14513 -11.83699 -11.65064 -11.56257 -11.38637 -10.97120 -10.86356 -10.72272 -10.51578 -10.36593 -10.23392 -10.11573 -9.86541 -8.71908 -8.23864 -7.84098 -5.28230 -0.06534 1.58411 1.83614 2.07117 2.56584 2.71799 2.77159 3.32032 3.50949 3.74586 4.03904 4.68306 4.81504 5.03666 5.21333 5.50486 5.54770 5.67031 5.74081 5.80242 5.87573 6.02302 6.12151 6.15552 6.36273 6.48659 6.55243 6.77225 7.01810 7.12922 7.34234 7.45409 7.75964 7.83327 8.58222 9.08297 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.017993 B = 0.010673 C = 0.007213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.746284 B = 2622.883966 C = 3880.821473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.019 4.019 4 C -0.192 4.192 5 C 0.108 3.892 6 C -0.375 4.375 7 H 0.107 0.893 8 C 0.075 3.925 9 N -0.726 5.726 10 Si 0.917 3.083 11 H -0.254 1.254 12 H -0.275 1.275 13 H -0.231 1.231 14 C -0.125 4.125 15 C 0.281 3.719 16 N -0.446 5.446 17 C 0.102 3.898 18 N -0.016 5.016 19 O -0.190 6.190 20 O -0.185 6.185 21 C -0.196 4.196 22 H 0.054 0.946 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.121 0.879 28 H 0.307 0.693 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.787 -10.670 -0.502 11.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.021 4.021 4 C -0.211 4.211 5 C 0.101 3.899 6 C -0.399 4.399 7 H 0.124 0.876 8 C -0.158 4.158 9 N -0.342 5.342 10 Si 0.740 3.260 11 H -0.179 1.179 12 H -0.201 1.201 13 H -0.153 1.153 14 C -0.132 4.132 15 C -0.031 4.031 16 N -0.125 5.125 17 C 0.014 3.986 18 N 0.460 4.540 19 O -0.382 6.382 20 O -0.376 6.376 21 C -0.218 4.218 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.139 0.861 28 H 0.120 0.880 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.292 -9.189 -1.315 9.561 hybrid contribution 0.087 -0.728 0.203 0.761 sum -2.206 -9.917 -1.111 10.219 Atomic orbital electron populations 1.21748 0.94722 1.01298 1.02595 1.20578 0.96292 0.92745 1.02661 1.19268 0.96107 0.95088 0.91647 1.21215 1.07147 0.95853 0.96885 1.18063 0.91537 0.90823 0.89436 1.21024 1.32756 0.97105 0.88993 0.87552 1.27955 0.91751 1.02268 0.93846 1.68961 1.24448 1.40541 1.00290 0.86197 0.80066 0.78444 0.81289 1.17891 1.20142 1.15301 1.16261 1.16379 0.89377 0.91158 1.24927 0.93449 0.92197 0.92526 1.80987 1.10876 1.11913 1.08718 1.20090 1.07085 0.93809 0.77600 1.50813 0.96169 1.02178 1.04797 1.96174 1.56913 1.64459 1.20698 1.96280 1.48553 0.96818 1.95956 1.19930 1.10729 0.92295 0.98804 0.92714 0.92334 0.92328 0.91154 0.90875 0.86149 0.87991 0.85009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.90 37.16 0.37 -1.33 15 2 C -0.09 -1.11 6.03 -27.88 -0.17 -1.27 15 3 C -0.02 -0.33 5.12 -104.74 -0.54 -0.87 15 4 C -0.19 -3.58 6.94 -38.73 -0.27 -3.85 15 5 C 0.11 2.30 5.44 -104.61 -0.57 1.73 15 6 C -0.38 -8.43 9.38 -35.52 -0.33 -8.76 15 7 H 0.11 2.62 7.55 -52.49 -0.40 2.22 15 8 C 0.08 1.54 5.59 -15.19 -0.08 1.45 15 9 N -0.73 -15.10 13.89 55.98 0.78 -14.32 15 10 Si 0.92 15.58 24.58 -169.99 -4.18 11.40 15 11 H -0.25 -3.93 6.69 56.52 0.38 -3.55 15 12 H -0.28 -4.51 7.11 56.52 0.40 -4.10 15 13 H -0.23 -4.04 6.84 56.52 0.39 -3.66 15 14 C -0.13 -2.81 5.94 -104.25 -0.62 -3.43 15 15 C 0.28 6.77 11.65 -22.47 -0.26 6.51 15 16 N -0.45 -11.12 18.27 41.84 0.76 -10.35 15 17 C 0.10 2.17 6.90 -79.58 -0.55 1.63 15 18 N -0.02 -0.36 4.98 34.14 0.17 -0.19 15 19 O -0.19 -4.08 19.13 -31.57 -0.60 -4.68 15 20 O -0.19 -4.49 16.92 -31.57 -0.53 -5.03 15 21 C -0.20 -3.59 9.17 -39.35 -0.36 -3.95 15 22 H 0.05 0.52 8.14 -51.93 -0.42 0.09 15 23 H 0.06 0.69 8.14 -51.93 -0.42 0.26 15 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 25 H 0.07 0.84 8.07 -51.93 -0.42 0.42 15 26 H 0.07 0.84 8.07 -51.93 -0.42 0.42 15 27 H 0.12 2.09 4.25 -52.49 -0.22 1.87 15 28 H 0.31 5.50 8.27 -40.82 -0.34 5.16 15 29 H 0.13 2.19 7.54 -52.49 -0.40 1.79 15 LS Contribution 268.63 15.07 4.05 4.05 Total: -1.00 -24.81 268.63 -5.23 -30.04 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -2.29 Total: 1.21 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -3.38 Total: -12.14 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 1.71 Total: -24.86 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -1.14 Total: -9.71 kcal Atomic # 14 Polarization: 15.58 SS G_CDS: -4.18 Total: 11.40 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -24.81 -5.23 -30.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646915.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.234 kcal (2) G-P(sol) polarization free energy of solvation -24.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds