Wall clock time and date at job start Mon Mar 30 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50701 * 109.46890 * 2 1 4 4 C 1.37539 * 119.41859 * 269.97775 * 3 2 1 5 5 C 1.41152 * 119.79111 * 179.75150 * 4 3 2 6 6 C 1.40179 * 120.62520 * 180.26008 * 5 4 3 7 7 H 1.07999 * 120.00304 * 154.89382 * 6 5 4 8 8 C 1.46510 * 120.00044 * 334.89975 * 6 5 4 9 9 N 1.29526 * 120.00166 * 161.19399 * 8 6 5 10 10 Si 1.86802 * 119.99949 * 341.19399 * 8 6 5 11 11 H 1.48498 * 109.46913 * 94.20847 * 10 8 6 12 12 H 1.48493 * 109.47067 * 214.20816 * 10 8 6 13 13 H 1.48499 * 109.47021 * 334.21342 * 10 8 6 14 14 C 1.46772 * 118.75354 * 0.56298 * 5 4 3 15 15 C 1.43194 * 120.56050 * 179.69772 * 14 5 4 16 16 N 6.87710 * 109.50249 * 1.22952 * 2 1 3 17 17 C 1.38983 * 118.86963 * 359.41981 * 14 5 4 18 18 N 1.48017 * 119.94684 * 180.27602 * 17 14 5 19 19 O 1.31704 * 120.00009 * 180.02562 * 18 17 14 20 20 O 1.31697 * 120.00334 * 359.97438 * 18 17 14 21 21 C 1.38495 * 120.09881 * 0.29912 * 17 14 5 22 22 H 1.09005 * 109.46665 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47189 * 299.99253 * 1 2 3 24 24 H 1.08998 * 109.46845 * 60.00011 * 1 2 3 25 25 H 1.08992 * 109.46950 * 240.00022 * 2 1 3 26 26 H 1.08998 * 109.46845 * 119.99989 * 2 1 3 27 27 H 1.07999 * 120.10427 * 0.02562 * 4 3 2 28 28 H 0.97006 * 120.00500 * 179.97438 * 9 8 6 29 29 H 1.07998 * 119.34192 * 179.97438 * 21 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2580 2.0576 -1.1980 5 6 2.7234 3.3902 -1.2072 6 6 2.9540 4.0577 -2.4181 7 1 2.9102 5.1361 -2.4571 8 6 3.2542 3.2925 -3.6309 9 7 3.1100 3.8412 -4.7952 10 14 3.8450 1.5253 -3.4979 11 1 2.6846 0.6057 -3.6113 12 1 4.8096 1.2423 -4.5908 13 1 4.5103 1.3233 -2.1857 14 6 2.9678 4.0615 0.0749 15 6 3.4463 5.4107 0.1107 16 7 3.8260 6.4810 0.1391 17 6 2.7214 3.3674 1.2535 18 7 2.9539 4.0235 2.5598 19 8 2.7212 3.3666 3.6773 20 8 3.3944 5.2639 2.6046 21 6 2.2592 2.0627 1.2075 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 2.0753 1.5412 -2.1288 28 1 3.3091 3.3347 -5.5982 29 1 2.0722 1.5347 2.1308 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575646915.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:29 Heat of formation + Delta-G solvation = 38.945319 kcal Electronic energy + Delta-G solvation = -17072.557275 eV Core-core repulsion = 14156.900013 eV Total energy + Delta-G solvation = -2915.657262 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.92136 -39.32424 -37.37162 -36.12243 -35.49150 -34.78702 -33.19735 -30.70187 -28.20508 -27.38170 -25.11322 -23.25245 -22.12435 -20.33363 -19.74585 -19.10848 -18.15343 -17.22754 -17.08880 -16.54535 -15.84281 -15.10426 -14.89369 -14.56715 -14.47977 -14.05220 -13.86912 -13.74895 -13.51825 -13.20224 -12.85590 -12.73775 -12.51472 -12.40465 -12.03251 -11.92420 -11.89572 -11.72981 -11.64665 -11.27135 -10.29939 -9.77383 -9.37462 -6.96443 -1.79308 -0.00062 0.16947 0.48948 1.19526 1.36499 1.47191 1.88387 1.93436 2.03442 2.32956 3.01637 3.19314 3.67068 3.97422 4.04380 4.22567 4.26239 4.49056 4.56468 4.62263 4.75672 4.86310 5.03310 5.14440 5.19240 5.25660 5.51106 5.56468 5.57608 5.69080 5.79403 6.10788 6.17151 6.77818 7.62375 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.017993 B = 0.010673 C = 0.007213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.746284 B = 2622.883966 C = 3880.821473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.015 4.015 4 C -0.173 4.173 5 C 0.108 3.892 6 C -0.410 4.410 7 H 0.062 0.938 8 C 0.047 3.953 9 N -0.759 5.759 10 Si 0.960 3.040 11 H -0.213 1.213 12 H -0.263 1.263 13 H -0.237 1.237 14 C -0.179 4.179 15 C 0.286 3.714 16 N -0.492 5.492 17 C 0.084 3.916 18 N -0.015 5.015 19 O -0.138 6.138 20 O -0.268 6.268 21 C -0.153 4.153 22 H 0.081 0.919 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.143 0.857 28 H 0.322 0.678 29 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.950 -15.937 -0.330 16.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.017 4.017 4 C -0.192 4.192 5 C 0.102 3.898 6 C -0.434 4.434 7 H 0.080 0.920 8 C -0.183 4.183 9 N -0.377 5.377 10 Si 0.777 3.223 11 H -0.136 1.136 12 H -0.189 1.189 13 H -0.160 1.160 14 C -0.186 4.186 15 C -0.024 4.024 16 N -0.172 5.172 17 C -0.004 4.004 18 N 0.458 4.542 19 O -0.348 6.348 20 O -0.437 6.437 21 C -0.174 4.174 22 H 0.100 0.900 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.109 0.891 26 H 0.117 0.883 27 H 0.160 0.840 28 H 0.136 0.864 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.407 -14.248 -1.217 14.700 hybrid contribution 0.294 0.613 0.208 0.711 sum -3.113 -13.635 -1.010 14.022 Atomic orbital electron populations 1.21776 0.93594 1.03025 1.02093 1.20761 0.97052 0.89363 1.05065 1.19833 0.94488 0.97305 0.90081 1.21577 1.04558 0.94193 0.98857 1.18198 0.91032 0.92125 0.88425 1.20966 1.35763 0.95546 0.91163 0.92002 1.28731 0.91175 1.05774 0.92650 1.68940 1.24992 1.42501 1.01264 0.85625 0.81195 0.74225 0.81281 1.13585 1.18880 1.15982 1.16393 1.20598 0.89199 0.92393 1.25467 0.92672 0.92779 0.91439 1.80915 1.13179 1.13161 1.09985 1.20376 1.08633 0.94748 0.76692 1.50983 0.95972 1.02120 1.05139 1.96108 1.53606 1.63791 1.21276 1.96320 1.53441 0.97883 1.96104 1.20570 1.05621 0.90409 1.00840 0.89970 0.92715 0.93109 0.89118 0.88349 0.83964 0.86412 0.81907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.90 71.98 0.71 -1.81 15 2 C -0.09 -1.61 6.03 29.85 0.18 -1.43 15 3 C -0.02 -0.44 5.12 -19.94 -0.10 -0.55 15 4 C -0.17 -5.86 6.94 22.82 0.16 -5.71 15 5 C 0.11 4.64 5.44 -19.86 -0.11 4.53 15 6 C -0.41 -19.25 9.38 24.90 0.23 -19.02 15 7 H 0.06 3.36 7.55 -2.91 -0.02 3.33 15 8 C 0.05 1.90 5.59 87.19 0.49 2.39 15 9 N -0.76 -31.90 13.89 23.21 0.32 -31.58 15 10 Si 0.96 28.86 24.58 68.60 1.69 30.55 15 11 H -0.21 -5.09 6.69 99.48 0.67 -4.43 15 12 H -0.26 -7.50 7.11 99.48 0.71 -6.79 15 13 H -0.24 -7.37 6.84 99.48 0.68 -6.69 15 14 C -0.18 -8.30 5.94 -19.62 -0.12 -8.41 15 15 C 0.29 14.91 11.65 88.33 1.03 15.94 15 16 N -0.49 -26.81 18.27 19.00 0.35 -26.46 15 17 C 0.08 3.49 6.90 36.62 0.25 3.74 15 18 N -0.01 -0.66 4.98 -45.89 -0.23 -0.88 15 19 O -0.14 -5.58 19.13 3.51 0.07 -5.51 15 20 O -0.27 -13.75 16.92 3.52 0.06 -13.69 15 21 C -0.15 -4.95 9.17 22.42 0.21 -4.74 15 22 H 0.08 1.01 8.14 -2.38 -0.02 0.99 15 23 H 0.05 0.98 8.14 -2.39 -0.02 0.96 15 24 H 0.05 0.95 8.14 -2.39 -0.02 0.93 15 25 H 0.09 1.45 8.07 -2.39 -0.02 1.43 15 26 H 0.10 1.47 8.07 -2.39 -0.02 1.45 15 27 H 0.14 4.23 4.25 -2.91 -0.01 4.22 15 28 H 0.32 11.36 8.27 -92.70 -0.77 10.59 15 29 H 0.16 4.36 7.54 -2.91 -0.02 4.34 15 Total: -1.00 -58.62 268.63 6.32 -52.30 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.13 Total: 10.34 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 2.93 Total: -15.06 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.44 Total: -58.93 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.13 Total: -19.21 kcal Atomic # 14 Polarization: 28.86 SS G_CDS: 1.69 Total: 30.55 kcal Total: -58.62 6.32 -52.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646915.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.250 kcal (2) G-P(sol) polarization free energy of solvation -58.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds