Wall clock time and date at job start Mon Mar 30 2020 06:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47085 * 2 1 4 4 C 1.36308 * 120.07816 * 264.97699 * 3 2 1 5 5 C 1.40029 * 120.15444 * 180.02562 * 4 3 2 6 6 C 1.43199 * 119.85617 * 180.02562 * 5 4 3 7 7 N 5.94195 * 108.68849 * 322.87665 * 2 1 3 8 8 C 1.40079 * 120.29141 * 0.02562 * 5 4 3 9 9 C 1.36278 * 120.14744 * 359.68826 * 8 5 4 10 10 N 1.48018 * 120.07523 * 180.28096 * 9 8 5 11 11 O 1.31696 * 120.00193 * 5.44266 * 10 9 8 12 12 O 1.31701 * 119.99751 * 185.44834 * 10 9 8 13 13 C 1.41264 * 120.07497 * 85.00310 * 3 2 1 14 14 C 1.40389 * 120.14596 * 359.94915 * 13 3 2 15 15 H 1.08007 * 120.00253 * 234.27145 * 14 13 3 16 16 C 1.46465 * 119.99885 * 54.26605 * 14 13 3 17 17 N 1.29545 * 119.99844 * 23.88431 * 16 14 13 18 18 Si 1.86807 * 120.00044 * 203.60764 * 16 14 13 19 19 H 1.48499 * 109.46820 * 180.27913 * 18 16 14 20 20 H 1.48500 * 109.46997 * 300.27588 * 18 16 14 21 21 H 1.48492 * 109.46930 * 60.27785 * 18 16 14 22 22 H 1.08999 * 109.47693 * 300.00377 * 1 2 3 23 23 H 1.09004 * 109.47046 * 59.99885 * 1 2 3 24 24 H 1.08992 * 109.47581 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47288 * 240.00487 * 2 1 3 26 26 H 1.09001 * 109.47195 * 119.99615 * 2 1 3 27 27 H 1.08008 * 119.92369 * 359.97438 * 4 3 2 28 28 H 1.07994 * 119.92479 * 179.97438 * 8 5 4 29 29 H 0.97006 * 120.00390 * 358.64547 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3574 2.0305 -1.1750 5 6 2.8248 3.3505 -1.1768 6 6 3.1639 3.9849 -2.4150 7 7 3.4339 4.4879 -3.3971 8 6 2.9621 4.0531 0.0272 9 6 2.6351 3.4572 1.2085 10 7 2.7749 4.2032 2.4792 11 8 3.1125 5.4761 2.4619 12 8 2.5617 3.5940 3.6273 13 6 2.1679 2.1238 1.2178 14 6 1.8344 1.5021 2.4316 15 1 1.1291 1.9704 3.1023 16 6 2.4428 0.2185 2.7883 17 7 3.5801 -0.1250 2.2719 18 14 1.5825 -0.9200 3.9939 19 1 2.4016 -2.1429 4.1906 20 1 1.4107 -0.2247 5.2948 21 1 0.2513 -1.2972 3.4547 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.2550 1.4939 -2.1068 28 1 3.3235 5.0707 0.0190 29 1 4.0193 0.4590 1.6339 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575647514.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:53 Heat of formation + Delta-G solvation = 47.959546 kcal Electronic energy + Delta-G solvation = -17367.856115 eV Core-core repulsion = 14452.589739 eV Total energy + Delta-G solvation = -2915.266376 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.41824 -37.10899 -36.25076 -34.70703 -33.15079 -32.91945 -30.98748 -29.32076 -26.71448 -25.05283 -23.27293 -22.32311 -20.33736 -18.97030 -17.96830 -16.79070 -15.82931 -15.37422 -15.23813 -14.71149 -14.41363 -13.92189 -13.43725 -13.34570 -13.25454 -12.68437 -12.38573 -12.19651 -11.87897 -11.64030 -11.54112 -11.04076 -10.83538 -10.66719 -10.57545 -10.44679 -9.90511 -9.67645 -9.47005 -9.38638 -8.64915 -8.37985 -7.95987 -5.31715 0.61900 1.47251 2.30734 2.60259 2.75644 2.79194 3.01275 3.19974 3.36467 3.44903 3.90209 4.41526 4.53283 5.21225 5.42780 5.54395 5.73649 5.84242 5.88461 5.97848 6.22611 6.29930 6.36083 6.51751 6.59285 6.67258 6.75107 6.95222 7.07301 7.11523 7.28742 7.67774 7.72859 8.01408 8.28821 9.06072 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.020052 B = 0.010203 C = 0.007425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.040977 B = 2743.667697 C = 3769.923991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 C -0.117 4.117 4 C -0.044 4.044 5 C -0.144 4.144 6 C 0.282 3.718 7 N -0.468 5.468 8 C 0.034 3.966 9 C -0.089 4.089 10 N 0.028 4.972 11 O -0.322 6.322 12 O -0.229 6.229 13 C 0.073 3.927 14 C -0.364 4.364 15 H 0.116 0.884 16 C 0.029 3.971 17 N -0.709 5.709 18 Si 1.069 2.931 19 H -0.263 1.263 20 H -0.259 1.259 21 H -0.260 1.260 22 H 0.061 0.939 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.118 0.882 28 H 0.131 0.869 29 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.529 -7.034 -0.807 8.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 C -0.118 4.118 4 C -0.065 4.065 5 C -0.151 4.151 6 C -0.031 4.031 7 N -0.146 5.146 8 C 0.011 3.989 9 C -0.187 4.187 10 N 0.464 4.536 11 O -0.474 6.474 12 O -0.404 6.404 13 C 0.067 3.933 14 C -0.391 4.391 15 H 0.134 0.866 16 C -0.202 4.202 17 N -0.328 5.328 18 Si 0.888 3.112 19 H -0.187 1.187 20 H -0.183 1.183 21 H -0.184 1.184 22 H 0.080 0.920 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.136 0.864 28 H 0.149 0.851 29 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.875 -7.699 -1.941 8.835 hybrid contribution -0.020 1.818 -0.238 1.834 sum -3.895 -5.880 -2.180 7.382 Atomic orbital electron populations 1.21678 0.95409 1.00794 1.02073 1.20593 0.95857 0.92471 1.03125 1.19680 1.04057 0.97197 0.90884 1.20394 0.95925 0.92354 0.97806 1.15140 1.19007 0.95381 0.85571 1.25661 0.92091 0.92639 0.92661 1.81148 1.12637 1.09362 1.11458 1.20242 0.90406 0.98714 0.89508 1.19807 1.21214 0.96509 0.81164 1.49806 0.98563 1.01599 1.03675 1.96130 1.60619 0.94439 1.96212 1.96146 1.59547 1.68596 1.16077 1.17147 0.92915 0.89012 0.94193 1.22836 1.14289 1.01012 1.01001 0.86627 1.29102 0.94832 0.96257 0.99970 1.70057 1.09798 1.38208 1.14704 0.83585 0.76509 0.75493 0.75659 1.18746 1.18316 1.18444 0.91981 0.93351 0.93182 0.92277 0.89344 0.86388 0.85088 0.87652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.89 37.15 0.37 -1.64 15 2 C -0.08 -1.32 5.50 -27.88 -0.15 -1.47 15 3 C -0.12 -2.11 4.70 -104.17 -0.49 -2.60 15 4 C -0.04 -0.76 9.30 -39.61 -0.37 -1.13 15 5 C -0.14 -2.63 5.75 -106.61 -0.61 -3.24 15 6 C 0.28 5.17 15.31 -22.47 -0.34 4.82 15 7 N -0.47 -9.09 18.54 41.84 0.78 -8.32 15 8 C 0.03 0.68 9.22 -39.60 -0.37 0.32 15 9 C -0.09 -2.00 6.89 -79.49 -0.55 -2.54 15 10 N 0.03 0.70 4.98 34.19 0.17 0.87 15 11 O -0.32 -8.37 19.14 -31.57 -0.60 -8.97 15 12 O -0.23 -5.91 16.68 -31.57 -0.53 -6.43 15 13 C 0.07 1.52 4.62 -106.78 -0.49 1.03 15 14 C -0.36 -7.57 6.31 -35.46 -0.22 -7.79 15 15 H 0.12 2.49 7.10 -52.48 -0.37 2.12 15 16 C 0.03 0.56 3.31 -15.20 -0.05 0.51 15 17 N -0.71 -14.29 12.46 55.98 0.70 -13.59 15 18 Si 1.07 16.37 30.02 -169.99 -5.10 11.26 15 19 H -0.26 -4.01 7.11 56.52 0.40 -3.61 15 20 H -0.26 -3.98 7.11 56.52 0.40 -3.58 15 21 H -0.26 -3.61 7.11 56.52 0.40 -3.21 15 22 H 0.06 0.93 7.97 -51.93 -0.41 0.52 15 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 24 H 0.05 0.61 8.14 -51.93 -0.42 0.18 15 25 H 0.06 0.84 8.04 -51.93 -0.42 0.42 15 26 H 0.09 1.50 4.26 -51.93 -0.22 1.28 15 27 H 0.12 1.73 8.05 -52.48 -0.42 1.30 15 28 H 0.13 2.56 7.55 -52.49 -0.40 2.17 15 29 H 0.31 6.49 7.58 -40.82 -0.31 6.18 15 LS Contribution 270.80 15.07 4.08 4.08 Total: -1.00 -24.86 270.80 -5.99 -30.85 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -2.19 Total: 3.99 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -3.28 Total: -13.74 kcal Atomic # 7 Polarization: -22.69 SS G_CDS: 1.64 Total: -21.04 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -1.13 Total: -15.40 kcal Atomic # 14 Polarization: 16.37 SS G_CDS: -5.10 Total: 11.26 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -24.86 -5.99 -30.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575647514.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.807 kcal (2) G-P(sol) polarization free energy of solvation -24.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds