Wall clock time and date at job start Mon Mar 30 2020 06:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47085 * 2 1 4 4 C 1.36308 * 120.07816 * 264.97699 * 3 2 1 5 5 C 1.40029 * 120.15444 * 180.02562 * 4 3 2 6 6 C 1.43199 * 119.85617 * 180.02562 * 5 4 3 7 7 N 5.94195 * 108.68849 * 322.87665 * 2 1 3 8 8 C 1.40079 * 120.29141 * 0.02562 * 5 4 3 9 9 C 1.36278 * 120.14744 * 359.68826 * 8 5 4 10 10 N 1.48018 * 120.07523 * 180.28096 * 9 8 5 11 11 O 1.31696 * 120.00193 * 5.44266 * 10 9 8 12 12 O 1.31701 * 119.99751 * 185.44834 * 10 9 8 13 13 C 1.41264 * 120.07497 * 85.00310 * 3 2 1 14 14 C 1.40389 * 120.14596 * 359.94915 * 13 3 2 15 15 H 1.08007 * 120.00253 * 234.27145 * 14 13 3 16 16 C 1.46465 * 119.99885 * 54.26605 * 14 13 3 17 17 N 1.29545 * 119.99844 * 23.88431 * 16 14 13 18 18 Si 1.86807 * 120.00044 * 203.60764 * 16 14 13 19 19 H 1.48499 * 109.46820 * 180.27913 * 18 16 14 20 20 H 1.48500 * 109.46997 * 300.27588 * 18 16 14 21 21 H 1.48492 * 109.46930 * 60.27785 * 18 16 14 22 22 H 1.08999 * 109.47693 * 300.00377 * 1 2 3 23 23 H 1.09004 * 109.47046 * 59.99885 * 1 2 3 24 24 H 1.08992 * 109.47581 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47288 * 240.00487 * 2 1 3 26 26 H 1.09001 * 109.47195 * 119.99615 * 2 1 3 27 27 H 1.08008 * 119.92369 * 359.97438 * 4 3 2 28 28 H 1.07994 * 119.92479 * 179.97438 * 8 5 4 29 29 H 0.97006 * 120.00390 * 358.64547 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3574 2.0305 -1.1750 5 6 2.8248 3.3505 -1.1768 6 6 3.1639 3.9849 -2.4150 7 7 3.4339 4.4879 -3.3971 8 6 2.9621 4.0531 0.0272 9 6 2.6351 3.4572 1.2085 10 7 2.7749 4.2032 2.4792 11 8 3.1125 5.4761 2.4619 12 8 2.5617 3.5940 3.6273 13 6 2.1679 2.1238 1.2178 14 6 1.8344 1.5021 2.4316 15 1 1.1291 1.9704 3.1023 16 6 2.4428 0.2185 2.7883 17 7 3.5801 -0.1250 2.2719 18 14 1.5825 -0.9200 3.9939 19 1 2.4016 -2.1429 4.1906 20 1 1.4107 -0.2247 5.2948 21 1 0.2513 -1.2972 3.4547 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.2550 1.4939 -2.1068 28 1 3.3235 5.0707 0.0190 29 1 4.0193 0.4590 1.6339 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575647514.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:53 Heat of formation + Delta-G solvation = 36.221656 kcal Electronic energy + Delta-G solvation = -17368.365108 eV Core-core repulsion = 14452.589739 eV Total energy + Delta-G solvation = -2915.775369 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.00962 -38.74779 -37.82892 -36.32571 -34.65537 -34.56425 -32.61660 -30.74165 -28.36902 -26.74217 -24.65004 -23.86818 -21.87002 -20.58353 -19.51581 -18.47666 -17.42027 -17.00609 -16.82094 -16.34231 -15.73995 -15.40178 -14.91480 -14.89360 -14.57180 -14.22739 -13.76906 -13.72489 -13.25778 -13.11380 -12.88281 -12.45291 -12.26978 -11.89844 -11.86882 -11.72910 -11.64969 -11.41092 -11.32974 -10.90950 -10.20424 -10.00881 -9.60032 -7.01367 -1.22648 -0.08629 0.68543 0.97816 1.42088 1.50648 1.65400 1.83822 1.88958 2.16267 2.38179 2.84819 2.93431 3.71279 4.03395 4.14568 4.25470 4.47916 4.53838 4.68605 4.77962 4.84041 4.99781 5.11245 5.19726 5.22639 5.34398 5.46379 5.55089 5.59020 5.67446 5.96489 6.08091 6.45779 6.54254 7.36793 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.020052 B = 0.010203 C = 0.007425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.040977 B = 2743.667697 C = 3769.923991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.096 4.096 4 C -0.051 4.051 5 C -0.097 4.097 6 C 0.294 3.706 7 N -0.472 5.472 8 C 0.008 3.992 9 C -0.084 4.084 10 N 0.027 4.973 11 O -0.406 6.406 12 O -0.309 6.309 13 C 0.033 3.967 14 C -0.318 4.318 15 H 0.104 0.896 16 C 0.008 3.992 17 N -0.698 5.698 18 Si 1.103 2.897 19 H -0.255 1.255 20 H -0.266 1.266 21 H -0.228 1.228 22 H 0.046 0.954 23 H 0.058 0.942 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.158 0.842 28 H 0.128 0.872 29 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.657 -10.734 -3.106 12.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 C -0.097 4.097 4 C -0.071 4.071 5 C -0.105 4.105 6 C -0.019 4.019 7 N -0.149 5.149 8 C -0.015 4.015 9 C -0.188 4.188 10 N 0.430 4.570 11 O -0.536 6.536 12 O -0.461 6.461 13 C 0.027 3.973 14 C -0.348 4.348 15 H 0.121 0.879 16 C -0.220 4.220 17 N -0.317 5.317 18 Si 0.915 3.085 19 H -0.178 1.178 20 H -0.190 1.190 21 H -0.150 1.150 22 H 0.065 0.935 23 H 0.077 0.923 24 H 0.094 0.906 25 H 0.106 0.894 26 H 0.096 0.904 27 H 0.176 0.824 28 H 0.146 0.854 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.969 -11.218 -4.082 12.930 hybrid contribution 0.286 2.546 0.128 2.565 sum -4.683 -8.672 -3.953 10.619 Atomic orbital electron populations 1.21688 0.93777 1.02499 1.01905 1.20727 0.97208 0.90432 1.04031 1.19990 1.01868 0.98048 0.89826 1.20713 0.95641 0.91690 0.99101 1.15280 1.15076 0.95519 0.84584 1.25470 0.91870 0.92260 0.92289 1.81184 1.12240 1.09477 1.12035 1.20289 0.92204 0.99258 0.89710 1.20217 1.20973 0.96669 0.80965 1.49843 1.01841 1.01441 1.03918 1.96054 1.65521 0.95706 1.96358 1.96049 1.64125 1.68396 1.17513 1.17519 0.95005 0.89071 0.95667 1.23305 1.10601 1.00934 0.99948 0.87861 1.30334 0.94645 0.96453 1.00590 1.70138 1.09920 1.37604 1.14014 0.83264 0.77356 0.74136 0.73760 1.17838 1.19020 1.15022 0.93513 0.92282 0.90609 0.89448 0.90396 0.82407 0.85438 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.89 71.98 0.71 -2.59 15 2 C -0.09 -2.33 5.50 29.85 0.16 -2.17 15 3 C -0.10 -3.15 4.70 -19.57 -0.09 -3.24 15 4 C -0.05 -1.54 9.30 22.25 0.21 -1.34 15 5 C -0.10 -3.30 5.75 -21.15 -0.12 -3.42 15 6 C 0.29 9.93 15.31 88.33 1.35 11.28 15 7 N -0.47 -16.99 18.54 19.00 0.35 -16.64 15 8 C 0.01 0.33 9.22 22.26 0.21 0.53 15 9 C -0.08 -3.88 6.89 36.67 0.25 -3.62 15 10 N 0.03 1.46 4.98 -45.76 -0.23 1.23 15 11 O -0.41 -23.44 19.14 3.52 0.07 -23.37 15 12 O -0.31 -17.37 16.68 3.51 0.06 -17.31 15 13 C 0.03 1.35 4.62 -21.26 -0.10 1.25 15 14 C -0.32 -13.03 6.31 24.94 0.16 -12.87 15 15 H 0.10 4.52 7.10 -2.91 -0.02 4.50 15 16 C 0.01 0.29 3.31 87.17 0.29 0.58 15 17 N -0.70 -26.54 12.46 23.20 0.29 -26.25 15 18 Si 1.10 29.90 30.02 68.60 2.06 31.96 15 19 H -0.25 -6.67 7.11 99.48 0.71 -5.96 15 20 H -0.27 -7.57 7.11 99.48 0.71 -6.87 15 21 H -0.23 -5.09 7.11 99.48 0.71 -4.39 15 22 H 0.05 1.23 7.97 -2.39 -0.02 1.21 15 23 H 0.06 1.27 8.14 -2.38 -0.02 1.25 15 24 H 0.07 1.41 8.14 -2.39 -0.02 1.39 15 25 H 0.09 1.93 8.04 -2.39 -0.02 1.91 15 26 H 0.08 2.30 4.26 -2.39 -0.01 2.29 15 27 H 0.16 3.61 8.05 -2.91 -0.02 3.59 15 28 H 0.13 5.24 7.55 -2.91 -0.02 5.22 15 29 H 0.30 12.11 7.58 -92.70 -0.70 11.41 15 Total: -1.00 -57.34 270.80 6.89 -50.45 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 1.26 Total: 15.55 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: 3.03 Total: -15.61 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.41 Total: -41.66 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: 0.13 Total: -40.68 kcal Atomic # 14 Polarization: 29.90 SS G_CDS: 2.06 Total: 31.96 kcal Total: -57.34 6.89 -50.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575647514.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.673 kcal (2) G-P(sol) polarization free energy of solvation -57.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds