Wall clock time and date at job start Mon Mar 30 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.47152 * 2 1 4 4 C 1.38516 * 119.76708 * 265.00001 * 3 2 1 5 5 C 1.40094 * 120.44826 * 179.97438 * 4 3 2 6 6 C 1.43201 * 120.00895 * 180.02562 * 5 4 3 7 7 N 5.95929 * 108.58619 * 322.41767 * 2 1 3 8 8 C 1.38909 * 119.98447 * 0.02934 * 5 4 3 9 9 C 1.41035 * 119.53991 * 359.97438 * 8 5 4 10 10 C 1.40390 * 120.22239 * 179.97438 * 9 8 5 11 11 H 1.07998 * 119.99946 * 155.13155 * 10 9 8 12 12 C 1.46539 * 119.99860 * 335.14618 * 10 9 8 13 13 N 1.29503 * 120.00035 * 335.22804 * 12 10 9 14 14 Si 1.86799 * 120.00012 * 155.23946 * 12 10 9 15 15 H 1.48491 * 109.47223 * 179.97438 * 14 12 10 16 16 H 1.48505 * 109.46724 * 299.99614 * 14 12 10 17 17 H 1.48498 * 109.47433 * 59.99253 * 14 12 10 18 18 C 1.37538 * 119.76581 * 85.26177 * 3 2 1 19 19 N 1.48027 * 119.99806 * 0.04112 * 18 3 2 20 20 O 1.31700 * 119.99911 * 270.25708 * 19 18 3 21 21 O 1.31690 * 120.00002 * 90.26124 * 19 18 3 22 22 H 1.09002 * 109.47464 * 299.99589 * 1 2 3 23 23 H 1.08997 * 109.47429 * 59.99830 * 1 2 3 24 24 H 1.09008 * 109.47062 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46997 * 240.00500 * 2 1 3 26 26 H 1.08997 * 109.47429 * 120.00170 * 2 1 3 27 27 H 1.08002 * 119.77470 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.23531 * 180.02562 * 8 5 4 29 29 H 0.97004 * 119.99896 * 354.23194 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3603 2.0343 -1.1978 5 6 2.8281 3.3547 -1.2145 6 6 3.1640 3.9799 -2.4582 7 7 3.4293 4.4763 -3.4450 8 6 2.9662 4.0573 -0.0242 9 6 2.6321 3.4322 1.1951 10 6 2.7666 4.1288 2.4066 11 1 2.1690 3.8468 3.2608 12 6 3.7177 5.2386 2.5119 13 7 4.7422 5.2906 1.7213 14 14 3.4527 6.5781 3.7866 15 1 4.5467 7.5774 3.6893 16 1 2.1490 7.2450 3.5398 17 1 3.4516 5.9763 5.1442 18 6 2.1669 2.0975 1.1898 19 7 1.8197 1.4296 2.4644 20 8 0.5921 1.5065 2.9350 21 8 2.7384 0.7586 3.1278 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8932 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.2547 1.4909 -2.1252 28 1 3.3261 5.0756 -0.0323 29 1 4.9265 4.5544 1.1172 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575647939.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:16 Heat of formation + Delta-G solvation = 31.803242 kcal Electronic energy + Delta-G solvation = -17202.039870 eV Core-core repulsion = 14286.072904 eV Total energy + Delta-G solvation = -2915.966966 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.03829 -39.24701 -37.65380 -36.74662 -35.31083 -34.64550 -32.82588 -30.63965 -28.28971 -27.03863 -24.80951 -23.78757 -22.60649 -20.31934 -19.50468 -19.14001 -18.51114 -17.78876 -16.21784 -15.81165 -15.64481 -15.25398 -15.13923 -14.92957 -14.65915 -14.52066 -14.04570 -13.73983 -13.57329 -13.15752 -12.87335 -12.65194 -12.44343 -12.40568 -12.11944 -12.04837 -11.90021 -11.80120 -11.64960 -11.27510 -10.28672 -10.01143 -9.67860 -7.03452 -1.12407 -0.39853 0.45057 0.50806 1.35391 1.43804 1.48262 1.75181 1.77940 2.11175 2.36343 2.74634 2.90133 3.56524 3.88046 4.15731 4.23875 4.27445 4.32121 4.50015 4.60444 4.73783 4.88230 4.91943 5.10756 5.15243 5.24149 5.28274 5.35321 5.44868 5.63724 5.74240 6.01362 6.13305 6.29458 7.48179 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.015965 B = 0.010948 C = 0.007012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.453882 B = 2556.904128 C = 3991.934219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C 0.021 3.979 4 C -0.201 4.201 5 C 0.040 3.960 6 C 0.284 3.716 7 N -0.449 5.449 8 C -0.164 4.164 9 C 0.099 3.901 10 C -0.508 4.508 11 H 0.074 0.926 12 C 0.017 3.983 13 N -0.744 5.744 14 Si 1.117 2.883 15 H -0.257 1.257 16 H -0.253 1.253 17 H -0.259 1.259 18 C -0.154 4.154 19 N 0.017 4.983 20 O -0.177 6.177 21 O -0.202 6.202 22 H 0.039 0.961 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.113 0.887 26 H 0.050 0.950 27 H 0.158 0.842 28 H 0.124 0.876 29 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.373 -2.659 -1.624 4.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.134 4.134 3 C 0.019 3.981 4 C -0.222 4.222 5 C 0.037 3.963 6 C -0.031 4.031 7 N -0.125 5.125 8 C -0.186 4.186 9 C 0.094 3.906 10 C -0.533 4.533 11 H 0.092 0.908 12 C -0.210 4.210 13 N -0.361 5.361 14 Si 0.931 3.069 15 H -0.180 1.180 16 H -0.177 1.177 17 H -0.183 1.183 18 C -0.237 4.237 19 N 0.510 4.490 20 O -0.384 6.384 21 O -0.401 6.401 22 H 0.058 0.942 23 H 0.091 0.909 24 H 0.102 0.898 25 H 0.132 0.868 26 H 0.069 0.931 27 H 0.176 0.824 28 H 0.142 0.858 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.073 -0.183 -3.332 3.928 hybrid contribution -0.653 -1.898 0.434 2.053 sum -2.727 -2.080 -2.898 4.490 Atomic orbital electron populations 1.21773 0.92801 1.03281 1.02456 1.20796 0.97924 0.90725 1.03933 1.19203 0.93501 0.96138 0.89234 1.20365 1.11330 0.93699 0.96806 1.15877 1.00715 0.94173 0.85579 1.25744 0.92586 0.92317 0.92411 1.81161 1.09920 1.09451 1.11941 1.21130 1.08528 0.99570 0.89402 1.17046 0.91311 0.87795 0.94403 1.22285 1.19594 1.13971 0.97434 0.90757 1.30168 0.89926 1.00853 1.00080 1.70121 1.20977 1.32254 1.12724 0.83017 0.78931 0.72304 0.72636 1.18038 1.17686 1.18309 1.20194 1.29434 0.94635 0.79411 1.50464 1.00380 0.95615 1.02574 1.96137 1.01881 1.66847 1.73552 1.96169 1.41194 1.41943 1.60795 0.94222 0.90855 0.89842 0.86843 0.93133 0.82432 0.85778 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 9.89 71.98 0.71 -3.25 15 2 C -0.10 -2.91 5.74 29.85 0.17 -2.74 15 3 C 0.02 0.77 5.12 -19.96 -0.10 0.66 15 4 C -0.20 -6.68 9.39 22.79 0.21 -6.47 15 5 C 0.04 1.47 5.72 -21.42 -0.12 1.35 15 6 C 0.28 10.04 15.32 88.33 1.35 11.40 15 7 N -0.45 -16.52 18.54 19.00 0.35 -16.17 15 8 C -0.16 -6.87 7.70 23.12 0.18 -6.69 15 9 C 0.10 4.59 5.37 -21.31 -0.11 4.47 15 10 C -0.51 -24.40 8.91 24.96 0.22 -24.18 15 11 H 0.07 3.75 7.68 -2.91 -0.02 3.73 15 12 C 0.02 0.74 5.12 87.20 0.45 1.19 15 13 N -0.74 -33.29 12.31 23.21 0.29 -33.01 15 14 Si 1.12 36.74 30.08 68.60 2.06 38.81 15 15 H -0.26 -8.05 7.11 99.48 0.71 -7.34 15 16 H -0.25 -7.83 7.11 99.48 0.71 -7.12 15 17 H -0.26 -8.22 7.11 99.48 0.71 -7.52 15 18 C -0.15 -6.88 6.27 36.97 0.23 -6.65 15 19 N 0.02 0.82 3.03 -45.04 -0.14 0.68 15 20 O -0.18 -8.23 18.91 3.52 0.07 -8.16 15 21 O -0.20 -9.77 19.94 3.53 0.07 -9.70 15 22 H 0.04 1.28 7.06 -2.39 -0.02 1.27 15 23 H 0.07 1.78 8.14 -2.39 -0.02 1.76 15 24 H 0.08 1.82 8.14 -2.38 -0.02 1.80 15 25 H 0.11 2.64 8.05 -2.39 -0.02 2.62 15 26 H 0.05 1.70 7.53 -2.39 -0.02 1.68 15 27 H 0.16 4.12 8.06 -2.91 -0.02 4.10 15 28 H 0.12 5.32 6.43 -2.91 -0.02 5.30 15 29 H 0.30 13.77 6.70 -92.70 -0.62 13.15 15 Total: -1.00 -52.27 276.48 7.23 -45.04 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 1.34 Total: 13.42 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: 3.19 Total: -30.90 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.50 Total: -48.50 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: 0.14 Total: -17.87 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.06 Total: 38.81 kcal Total: -52.27 7.23 -45.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575647939.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.842 kcal (2) G-P(sol) polarization free energy of solvation -52.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds