Wall clock time and date at job start Mon Mar 30 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50694 * 109.47370 * 2 1 4 4 C 1.38499 * 119.34409 * 103.31862 * 3 2 1 5 5 C 1.38983 * 120.09567 * 179.75434 * 4 3 2 6 6 C 1.43196 * 120.56396 * 180.23723 * 5 4 3 7 7 N 5.95565 * 113.56439 * 37.95295 * 2 1 3 8 8 C 1.46765 * 118.87222 * 0.49140 * 5 4 3 9 9 C 1.40182 * 120.62171 * 179.76705 * 8 5 4 10 10 H 1.07997 * 120.00171 * 19.64407 * 9 8 5 11 11 C 1.46507 * 119.99967 * 199.36894 * 9 8 5 12 12 N 1.29530 * 120.00291 * 16.28363 * 11 9 8 13 13 Si 1.86800 * 120.00063 * 196.28168 * 11 9 8 14 14 H 1.48505 * 109.47137 * 59.99896 * 13 11 9 15 15 H 1.48500 * 109.47439 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47387 * 300.00302 * 13 11 9 17 17 C 1.41153 * 118.75668 * 359.49382 * 8 5 4 18 18 C 1.37540 * 119.79042 * 0.25135 * 17 8 5 19 19 N 1.48018 * 119.41826 * 180.02562 * 18 17 8 20 20 O 1.31703 * 119.99769 * 354.47065 * 19 18 17 21 21 O 1.31702 * 119.99993 * 174.47258 * 19 18 17 22 22 H 1.08996 * 109.47119 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47204 * 300.00650 * 1 2 3 24 24 H 1.09001 * 109.46893 * 60.00487 * 1 2 3 25 25 H 1.08998 * 109.46725 * 239.99292 * 2 1 3 26 26 H 1.08997 * 109.46577 * 119.99870 * 2 1 3 27 27 H 1.07995 * 119.94879 * 359.97438 * 4 3 2 28 28 H 0.96996 * 120.00523 * 184.99165 * 12 11 9 29 29 H 1.08000 * 120.10524 * 180.22726 * 17 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.5209 1.9679 1.1748 5 6 2.9929 3.2750 1.1914 6 6 3.5048 3.8491 2.3992 7 7 3.9110 4.3045 3.3574 8 6 2.9525 4.0588 -0.0488 9 6 3.4145 5.3821 -0.0725 10 1 4.0806 5.7355 0.7006 11 6 2.9985 6.2840 -1.1495 12 7 1.9801 5.9815 -1.8906 13 14 3.9367 7.8704 -1.4541 14 1 5.3515 7.5546 -1.7769 15 1 3.3200 8.5999 -2.5910 16 1 3.8845 8.7181 -0.2359 17 6 2.4452 3.4533 -1.2186 18 6 1.9968 2.1538 -1.1760 19 7 1.4670 1.5268 -2.4077 20 8 1.3262 2.2438 -3.5034 21 8 1.1364 0.2519 -2.4079 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.5384 1.3768 2.0785 28 1 1.7485 6.5409 -2.6484 29 1 2.4088 4.0089 -2.1440 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575648091.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:19 Heat of formation + Delta-G solvation = 55.118993 kcal Electronic energy + Delta-G solvation = -17128.059559 eV Core-core repulsion = 14213.103640 eV Total energy + Delta-G solvation = -2914.955919 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.22496 -37.36365 -35.48136 -34.99271 -33.81157 -32.53184 -30.82928 -29.70458 -26.01140 -25.99234 -22.66070 -21.97863 -20.96282 -18.57825 -17.64863 -17.33706 -16.47572 -15.46369 -15.22226 -14.77665 -13.91095 -13.51640 -13.40807 -13.21336 -13.02654 -12.46352 -12.11848 -11.99751 -11.79243 -11.68009 -11.27267 -11.08833 -11.03445 -10.87597 -10.69460 -10.39609 -10.25828 -9.91192 -9.85121 -9.45793 -8.43885 -8.29393 -7.68371 -5.13977 0.18119 1.89218 2.11256 2.17809 2.64365 2.69447 2.75364 3.33765 3.56242 3.59411 4.00547 4.83199 4.98533 5.41156 5.52084 5.73853 5.92113 5.98259 6.03007 6.11929 6.19246 6.35414 6.47307 6.58835 6.67383 6.73929 6.84011 7.08402 7.13346 7.28547 7.55565 7.73677 7.78542 7.93254 8.46836 9.13895 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.020143 B = 0.009152 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.716455 B = 3058.828838 C = 4286.269224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 C -0.199 4.199 4 C -0.004 4.004 5 C -0.170 4.170 6 C 0.295 3.705 7 N -0.491 5.491 8 C 0.120 3.880 9 C -0.384 4.384 10 H 0.102 0.898 11 C 0.063 3.937 12 N -0.719 5.719 13 Si 0.932 3.068 14 H -0.251 1.251 15 H -0.266 1.266 16 H -0.253 1.253 17 C -0.093 4.093 18 C 0.056 3.944 19 N -0.006 5.006 20 O -0.207 6.207 21 O -0.194 6.194 22 H 0.049 0.951 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.054 0.946 27 H 0.119 0.881 28 H 0.310 0.690 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.091 -1.386 -1.008 1.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.025 4.025 5 C -0.176 4.176 6 C -0.015 4.015 7 N -0.169 5.169 8 C 0.113 3.887 9 C -0.409 4.409 10 H 0.120 0.880 11 C -0.169 4.169 12 N -0.337 5.337 13 Si 0.753 3.247 14 H -0.175 1.175 15 H -0.190 1.190 16 H -0.177 1.177 17 C -0.114 4.114 18 C -0.031 4.031 19 N 0.466 4.534 20 O -0.395 6.395 21 O -0.384 6.384 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.109 0.891 26 H 0.073 0.927 27 H 0.137 0.863 28 H 0.123 0.877 29 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.704 -0.321 0.802 1.115 hybrid contribution -0.138 0.315 -0.989 1.047 sum 0.566 -0.007 -0.187 0.596 Atomic orbital electron populations 1.21706 0.95964 1.00682 1.01018 1.20618 0.95616 0.92353 1.02596 1.18617 1.12793 0.97589 0.91168 1.20269 0.94090 0.92595 0.95560 1.16767 1.17285 0.95980 0.87565 1.25508 0.91822 0.92044 0.92128 1.81075 1.13656 1.09880 1.12325 1.18113 0.90355 0.92447 0.87736 1.21196 1.20034 0.93300 1.06340 0.88005 1.27801 0.93499 1.01602 0.93997 1.68985 1.17186 1.37015 1.10540 0.85907 0.80700 0.78240 0.79847 1.17500 1.19041 1.17709 1.21691 0.98222 0.90400 1.01043 1.20157 1.07208 0.94346 0.81408 1.50830 0.96487 1.01922 1.04149 1.96217 1.61119 1.61448 1.20703 1.96082 1.54887 0.94418 1.93030 0.93227 0.93773 0.93001 0.89103 0.92691 0.86312 0.87680 0.82080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.24 37.16 0.34 -1.89 15 2 C -0.07 -1.27 5.33 -27.88 -0.15 -1.42 15 3 C -0.20 -3.88 5.18 -104.39 -0.54 -4.42 15 4 C 0.00 -0.07 9.35 -39.21 -0.37 -0.44 15 5 C -0.17 -3.51 5.93 -104.25 -0.62 -4.12 15 6 C 0.30 6.18 14.24 -22.48 -0.32 5.86 15 7 N -0.49 -10.65 18.54 41.84 0.78 -9.88 15 8 C 0.12 2.62 5.82 -104.62 -0.61 2.01 15 9 C -0.38 -8.22 8.93 -35.52 -0.32 -8.54 15 10 H 0.10 2.15 7.34 -52.49 -0.39 1.77 15 11 C 0.06 1.24 5.39 -15.19 -0.08 1.15 15 12 N -0.72 -14.65 10.72 55.98 0.60 -14.05 15 13 Si 0.93 14.80 29.67 -169.99 -5.04 9.75 15 14 H -0.25 -3.99 7.11 56.52 0.40 -3.58 15 15 H -0.27 -4.05 7.11 56.52 0.40 -3.65 15 16 H -0.25 -4.09 7.11 56.52 0.40 -3.68 15 17 C -0.09 -2.05 8.35 -38.73 -0.32 -2.37 15 18 C 0.06 1.20 6.77 -80.06 -0.54 0.66 15 19 N -0.01 -0.12 4.80 33.91 0.16 0.04 15 20 O -0.21 -4.75 19.10 -31.57 -0.60 -5.35 15 21 O -0.19 -4.07 13.86 -31.57 -0.44 -4.51 15 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 15 24 H 0.05 0.95 6.39 -51.93 -0.33 0.62 15 25 H 0.09 1.62 5.72 -51.93 -0.30 1.32 15 26 H 0.05 0.81 7.93 -51.93 -0.41 0.40 15 27 H 0.12 1.91 7.98 -52.49 -0.42 1.49 15 28 H 0.31 5.58 8.27 -40.82 -0.34 5.24 15 29 H 0.16 3.68 5.27 -52.49 -0.28 3.40 15 LS Contribution 267.73 15.07 4.03 4.03 Total: -1.00 -23.47 267.73 -6.14 -29.61 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -2.10 Total: 3.87 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -3.52 Total: -13.51 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 1.54 Total: -23.89 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -1.04 Total: -9.86 kcal Atomic # 14 Polarization: 14.80 SS G_CDS: -5.04 Total: 9.75 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -23.47 -6.14 -29.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575648091.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.726 kcal (2) G-P(sol) polarization free energy of solvation -23.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds