Wall clock time and date at job start Mon Mar 30 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50694 * 109.47370 * 2 1 4 4 C 1.38499 * 119.34409 * 103.31862 * 3 2 1 5 5 C 1.38983 * 120.09567 * 179.75434 * 4 3 2 6 6 C 1.43196 * 120.56396 * 180.23723 * 5 4 3 7 7 N 5.95565 * 113.56439 * 37.95295 * 2 1 3 8 8 C 1.46765 * 118.87222 * 0.49140 * 5 4 3 9 9 C 1.40182 * 120.62171 * 179.76705 * 8 5 4 10 10 H 1.07997 * 120.00171 * 19.64407 * 9 8 5 11 11 C 1.46507 * 119.99967 * 199.36894 * 9 8 5 12 12 N 1.29530 * 120.00291 * 16.28363 * 11 9 8 13 13 Si 1.86800 * 120.00063 * 196.28168 * 11 9 8 14 14 H 1.48505 * 109.47137 * 59.99896 * 13 11 9 15 15 H 1.48500 * 109.47439 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47387 * 300.00302 * 13 11 9 17 17 C 1.41153 * 118.75668 * 359.49382 * 8 5 4 18 18 C 1.37540 * 119.79042 * 0.25135 * 17 8 5 19 19 N 1.48018 * 119.41826 * 180.02562 * 18 17 8 20 20 O 1.31703 * 119.99769 * 354.47065 * 19 18 17 21 21 O 1.31702 * 119.99993 * 174.47258 * 19 18 17 22 22 H 1.08996 * 109.47119 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47204 * 300.00650 * 1 2 3 24 24 H 1.09001 * 109.46893 * 60.00487 * 1 2 3 25 25 H 1.08998 * 109.46725 * 239.99292 * 2 1 3 26 26 H 1.08997 * 109.46577 * 119.99870 * 2 1 3 27 27 H 1.07995 * 119.94879 * 359.97438 * 4 3 2 28 28 H 0.96996 * 120.00523 * 184.99165 * 12 11 9 29 29 H 1.08000 * 120.10524 * 180.22726 * 17 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.5209 1.9679 1.1748 5 6 2.9929 3.2750 1.1914 6 6 3.5048 3.8491 2.3992 7 7 3.9110 4.3045 3.3574 8 6 2.9525 4.0588 -0.0488 9 6 3.4145 5.3821 -0.0725 10 1 4.0806 5.7355 0.7006 11 6 2.9985 6.2840 -1.1495 12 7 1.9801 5.9815 -1.8906 13 14 3.9367 7.8704 -1.4541 14 1 5.3515 7.5546 -1.7769 15 1 3.3200 8.5999 -2.5910 16 1 3.8845 8.7181 -0.2359 17 6 2.4452 3.4533 -1.2186 18 6 1.9968 2.1538 -1.1760 19 7 1.4670 1.5268 -2.4077 20 8 1.3262 2.2438 -3.5034 21 8 1.1364 0.2519 -2.4079 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.5384 1.3768 2.0785 28 1 1.7485 6.5409 -2.6484 29 1 2.4088 4.0089 -2.1440 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575648091.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:19 Heat of formation + Delta-G solvation = 45.490107 kcal Electronic energy + Delta-G solvation = -17128.477099 eV Core-core repulsion = 14213.103640 eV Total energy + Delta-G solvation = -2915.373459 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.87562 -39.05099 -37.15789 -36.53298 -35.49289 -34.07129 -32.47313 -31.21523 -27.71861 -27.53038 -24.11979 -23.62601 -22.49678 -20.20448 -19.29894 -19.03564 -18.09749 -16.93822 -16.92595 -16.32721 -15.45618 -15.01008 -14.90652 -14.65532 -14.62556 -13.97911 -13.66974 -13.53954 -13.36034 -13.09906 -12.73521 -12.65313 -12.56007 -12.29163 -12.09594 -12.07341 -11.77450 -11.54564 -11.37472 -11.00161 -10.07863 -9.88236 -9.18203 -6.76911 -1.53638 0.23930 0.41744 0.63321 1.31160 1.41969 1.47820 1.89435 1.99694 2.02445 2.41654 3.20011 3.34114 3.90045 4.02776 4.28594 4.34442 4.47477 4.60811 4.68312 4.75139 4.84652 5.06655 5.12650 5.15764 5.23469 5.47728 5.52190 5.54582 5.75543 5.91740 6.08226 6.16657 6.31357 6.79549 7.67882 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.020143 B = 0.009152 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.716455 B = 3058.828838 C = 4286.269224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.075 4.075 3 C -0.195 4.195 4 C 0.007 3.993 5 C -0.174 4.174 6 C 0.304 3.696 7 N -0.504 5.504 8 C 0.103 3.897 9 C -0.409 4.409 10 H 0.099 0.901 11 C 0.035 3.965 12 N -0.746 5.746 13 Si 0.995 3.005 14 H -0.250 1.250 15 H -0.254 1.254 16 H -0.255 1.255 17 C -0.115 4.115 18 C 0.045 3.955 19 N -0.008 5.008 20 O -0.262 6.262 21 O -0.151 6.151 22 H 0.075 0.925 23 H 0.050 0.950 24 H 0.024 0.976 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.155 0.845 28 H 0.319 0.681 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.202 -2.280 0.074 2.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 C -0.198 4.198 4 C -0.015 4.015 5 C -0.180 4.180 6 C -0.005 4.005 7 N -0.183 5.183 8 C 0.097 3.903 9 C -0.433 4.433 10 H 0.117 0.883 11 C -0.194 4.194 12 N -0.365 5.365 13 Si 0.812 3.188 14 H -0.174 1.174 15 H -0.177 1.177 16 H -0.179 1.179 17 C -0.137 4.137 18 C -0.041 4.041 19 N 0.463 4.537 20 O -0.435 6.435 21 O -0.355 6.355 22 H 0.094 0.906 23 H 0.069 0.931 24 H 0.043 0.957 25 H 0.102 0.898 26 H 0.106 0.894 27 H 0.173 0.827 28 H 0.133 0.867 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.814 -1.099 1.802 2.262 hybrid contribution -0.221 0.388 -1.214 1.294 sum 0.593 -0.711 0.588 1.096 Atomic orbital electron populations 1.21685 0.95330 1.02126 1.00042 1.20697 0.96032 0.90524 1.03929 1.19039 1.11650 0.98760 0.90339 1.20613 0.92365 0.91951 0.96527 1.16930 1.17323 0.96802 0.86969 1.25496 0.91457 0.91677 0.91918 1.81079 1.14142 1.10206 1.12875 1.18328 0.90780 0.93052 0.88159 1.21397 1.20699 0.93775 1.07418 0.88305 1.28546 0.93897 1.03863 0.93142 1.68994 1.18169 1.38258 1.11076 0.85016 0.79390 0.74527 0.79854 1.17369 1.17726 1.17859 1.21553 1.00296 0.91006 1.00799 1.20460 1.07319 0.94571 0.81787 1.50945 0.96483 1.01875 1.04376 1.96232 1.64211 1.61774 1.21320 1.96043 1.52207 0.94342 1.92867 0.90602 0.93060 0.95657 0.89787 0.89360 0.82729 0.86713 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.96 9.24 71.98 0.67 -3.30 15 2 C -0.07 -2.28 5.33 29.85 0.16 -2.12 15 3 C -0.19 -7.19 5.18 -19.71 -0.10 -7.29 15 4 C 0.01 0.23 9.35 22.51 0.21 0.44 15 5 C -0.17 -7.00 5.93 -19.63 -0.12 -7.12 15 6 C 0.30 12.37 14.24 88.33 1.26 13.63 15 7 N -0.50 -21.25 18.54 19.00 0.35 -20.89 15 8 C 0.10 4.56 5.82 -19.86 -0.12 4.44 15 9 C -0.41 -17.77 8.93 24.90 0.22 -17.55 15 10 H 0.10 4.23 7.34 -2.91 -0.02 4.21 15 11 C 0.03 1.38 5.39 87.19 0.47 1.85 15 12 N -0.75 -31.18 10.72 23.21 0.25 -30.93 15 13 Si 0.99 29.98 29.67 68.60 2.04 32.02 15 14 H -0.25 -7.44 7.11 99.48 0.71 -6.73 15 15 H -0.25 -7.07 7.11 99.48 0.71 -6.37 15 16 H -0.25 -7.69 7.11 99.48 0.71 -6.98 15 17 C -0.12 -5.24 8.35 22.82 0.19 -5.05 15 18 C 0.05 1.95 6.77 36.30 0.25 2.20 15 19 N -0.01 -0.34 4.80 -46.64 -0.22 -0.56 15 20 O -0.26 -12.50 19.10 3.51 0.07 -12.43 15 21 O -0.15 -6.11 13.86 3.51 0.05 -6.06 15 22 H 0.08 1.84 8.14 -2.39 -0.02 1.82 15 23 H 0.05 1.43 8.14 -2.39 -0.02 1.41 15 24 H 0.02 0.86 6.39 -2.39 -0.02 0.84 15 25 H 0.08 2.72 5.72 -2.39 -0.01 2.71 15 26 H 0.09 2.16 7.93 -2.39 -0.02 2.14 15 27 H 0.16 4.29 7.98 -2.91 -0.02 4.26 15 28 H 0.32 11.73 8.27 -92.71 -0.77 10.96 15 29 H 0.15 7.04 5.27 -2.91 -0.02 7.02 15 Total: -1.00 -50.25 267.73 6.82 -43.42 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 1.21 Total: 15.30 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 3.09 Total: -19.87 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.38 Total: -52.38 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.12 Total: -18.49 kcal Atomic # 14 Polarization: 29.98 SS G_CDS: 2.04 Total: 32.02 kcal Total: -50.25 6.82 -43.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575648091.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.913 kcal (2) G-P(sol) polarization free energy of solvation -50.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds