Wall clock time and date at job start Mon Mar 30 2020 06:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50709 * 109.46847 * 2 1 4 4 C 1.40136 * 119.77726 * 95.79331 * 3 2 1 5 5 C 1.43207 * 120.00589 * 359.97438 * 4 3 2 6 6 N 3.55409 * 100.21542 * 77.73533 * 2 1 3 7 7 C 1.38867 * 119.98710 * 179.72298 * 4 3 2 8 8 C 1.41067 * 119.53957 * 0.25254 * 7 4 3 9 9 C 1.40390 * 120.22270 * 179.97438 * 8 7 4 10 10 H 1.07996 * 120.00289 * 147.14895 * 9 8 7 11 11 C 1.46535 * 119.99713 * 327.15603 * 9 8 7 12 12 N 1.29498 * 120.00373 * 353.99523 * 11 9 8 13 13 Si 1.86801 * 119.99759 * 173.99619 * 11 9 8 14 14 H 1.48498 * 109.47252 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47210 * 119.99610 * 13 11 9 16 16 H 1.48503 * 109.46965 * 239.99627 * 13 11 9 17 17 C 1.41313 * 119.55985 * 0.02562 * 8 7 4 18 18 C 1.37580 * 120.00091 * 359.97438 * 17 8 7 19 19 N 1.48012 * 119.76698 * 179.97438 * 18 17 8 20 20 O 1.31704 * 120.00135 * 7.20718 * 19 18 17 21 21 O 1.31701 * 119.99813 * 187.21117 * 19 18 17 22 22 H 1.08998 * 109.46768 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47076 * 299.99664 * 1 2 3 24 24 H 1.08998 * 109.47040 * 60.00058 * 1 2 3 25 25 H 1.09004 * 109.47076 * 240.00336 * 2 1 3 26 26 H 1.08994 * 109.47746 * 120.00026 * 2 1 3 27 27 H 1.07991 * 120.23178 * 180.22813 * 7 4 3 28 28 H 0.97001 * 120.00361 * 180.02562 * 12 11 9 29 29 H 1.08000 * 119.99938 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3800 2.0362 1.2101 5 6 2.2571 1.3152 2.4413 6 7 2.1603 0.7430 3.4179 7 6 2.8488 3.3433 1.2146 8 6 2.9660 4.0443 -0.0039 9 6 3.4377 5.3665 -0.0160 10 1 4.0161 5.7259 -0.8543 11 6 3.1455 6.2590 1.1089 12 7 2.3566 5.8673 2.0582 13 14 3.9110 7.9617 1.1736 14 1 4.7680 8.1649 -0.0220 15 1 2.8369 8.9869 1.1933 16 1 4.7372 8.0866 2.4013 17 6 2.6043 3.4072 -1.2123 18 6 2.1420 2.1115 -1.1953 19 7 1.7641 1.4494 -2.4640 20 8 2.0027 2.0449 -3.6142 21 8 1.1892 0.2647 -2.4426 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.1213 3.8200 2.1445 28 1 2.1628 6.4582 2.8027 29 1 2.6908 3.9374 -2.1492 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575649024.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:22 Heat of formation + Delta-G solvation = 56.706870 kcal Electronic energy + Delta-G solvation = -17075.459594 eV Core-core repulsion = 14160.572531 eV Total energy + Delta-G solvation = -2914.887063 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.49948 -37.62178 -35.94175 -34.73273 -33.87424 -32.66787 -30.99491 -29.89778 -25.92007 -25.65886 -23.24920 -22.30791 -20.71377 -19.14670 -17.47504 -16.79907 -16.10295 -15.67935 -15.33226 -15.08589 -14.82181 -13.60399 -13.44479 -13.28272 -12.80385 -12.54816 -12.22682 -12.05141 -12.00450 -11.67265 -11.40908 -11.16663 -10.99168 -10.82667 -10.71432 -10.54465 -10.32036 -10.06342 -9.82059 -9.58723 -8.55329 -8.17666 -7.45874 -4.99770 0.15252 1.52486 1.94646 2.17619 2.69661 2.76239 2.81863 3.17828 3.43939 3.49419 4.04076 4.45960 4.74860 5.26565 5.40184 5.79892 5.88243 5.91250 5.95049 6.08016 6.09769 6.33431 6.38106 6.46270 6.59274 6.67777 6.83529 6.95053 7.15113 7.25358 7.59037 7.76020 7.93203 8.01903 8.11823 9.45427 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.022147 B = 0.008080 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.958754 B = 3464.683127 C = 4534.497413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 C -0.112 4.112 4 C -0.015 4.015 5 C 0.281 3.719 6 N -0.448 5.448 7 C -0.064 4.064 8 C 0.098 3.902 9 C -0.443 4.443 10 H 0.099 0.901 11 C 0.071 3.929 12 N -0.761 5.761 13 Si 0.929 3.071 14 H -0.252 1.252 15 H -0.267 1.267 16 H -0.266 1.266 17 C -0.152 4.152 18 C 0.044 3.956 19 N -0.004 5.004 20 O -0.210 6.210 21 O -0.190 6.190 22 H 0.053 0.947 23 H 0.044 0.956 24 H 0.059 0.941 25 H 0.095 0.905 26 H 0.056 0.944 27 H 0.142 0.858 28 H 0.298 0.702 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.847 0.539 -0.452 1.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.122 4.122 3 C -0.118 4.118 4 C -0.019 4.019 5 C -0.033 4.033 6 N -0.124 5.124 7 C -0.087 4.087 8 C 0.094 3.906 9 C -0.469 4.469 10 H 0.117 0.883 11 C -0.156 4.156 12 N -0.382 5.382 13 Si 0.752 3.248 14 H -0.175 1.175 15 H -0.192 1.192 16 H -0.191 1.191 17 C -0.173 4.173 18 C -0.042 4.042 19 N 0.468 4.532 20 O -0.397 6.397 21 O -0.381 6.381 22 H 0.072 0.928 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.113 0.887 26 H 0.074 0.926 27 H 0.160 0.840 28 H 0.111 0.889 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.731 0.010 1.785 1.928 hybrid contribution 0.063 0.831 -0.595 1.024 sum 0.794 0.841 1.190 1.659 Atomic orbital electron populations 1.21628 0.94804 1.01184 1.01438 1.20745 0.96591 0.91969 1.02931 1.18910 1.06723 0.96965 0.89201 1.15483 1.07378 0.93874 0.85173 1.25681 0.92655 0.92327 0.92645 1.81122 1.10191 1.09760 1.11374 1.22015 0.96470 0.89613 1.00569 1.17276 0.91324 0.93365 0.88615 1.20836 1.28824 0.93951 1.03317 0.88344 1.27549 0.92552 1.02092 0.93407 1.68981 1.22938 1.38787 1.07463 0.85877 0.79910 0.78822 0.80216 1.17479 1.19206 1.19113 1.21258 1.03310 0.92058 1.00683 1.19705 1.10742 0.94153 0.79644 1.50697 0.96672 1.01198 1.04682 1.96209 1.61428 1.66225 1.15813 1.96104 1.43242 1.02928 1.95846 0.92805 0.93700 0.92180 0.88663 0.92583 0.84035 0.88919 0.84849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 9.34 37.16 0.35 -1.87 15 2 C -0.08 -1.51 4.99 -27.88 -0.14 -1.65 15 3 C -0.11 -2.21 5.20 -103.82 -0.54 -2.75 15 4 C -0.01 -0.29 5.72 -107.02 -0.61 -0.90 15 5 C 0.28 5.48 13.66 -22.47 -0.31 5.17 15 6 N -0.45 -8.97 18.54 41.84 0.78 -8.19 15 7 C -0.06 -1.33 8.40 -38.28 -0.32 -1.65 15 8 C 0.10 2.08 5.55 -106.85 -0.59 1.49 15 9 C -0.44 -9.26 9.29 -35.43 -0.33 -9.59 15 10 H 0.10 1.95 7.95 -52.49 -0.42 1.54 15 11 C 0.07 1.40 5.47 -15.19 -0.08 1.31 15 12 N -0.76 -15.65 11.04 55.98 0.62 -15.03 15 13 Si 0.93 14.93 29.65 -169.99 -5.04 9.89 15 14 H -0.25 -4.03 7.11 56.52 0.40 -3.63 15 15 H -0.27 -4.31 7.11 56.52 0.40 -3.91 15 16 H -0.27 -4.25 7.11 56.52 0.40 -3.84 15 17 C -0.15 -3.15 9.33 -38.65 -0.36 -3.51 15 18 C 0.04 0.91 6.83 -80.10 -0.55 0.37 15 19 N 0.00 -0.08 4.98 33.89 0.17 0.09 15 20 O -0.21 -4.54 19.14 -31.57 -0.60 -5.14 15 21 O -0.19 -3.87 14.08 -31.57 -0.44 -4.31 15 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.04 0.75 8.14 -51.93 -0.42 0.32 15 24 H 0.06 1.06 6.70 -51.93 -0.35 0.71 15 25 H 0.10 1.71 5.70 -51.93 -0.30 1.42 15 26 H 0.06 0.96 6.86 -51.93 -0.36 0.60 15 27 H 0.14 2.98 6.42 -52.49 -0.34 2.64 15 28 H 0.30 5.49 8.27 -40.82 -0.34 5.15 15 29 H 0.13 2.68 7.57 -52.49 -0.40 2.28 15 LS Contribution 268.29 15.07 4.04 4.04 Total: -1.00 -22.49 268.29 -6.10 -28.59 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -2.13 Total: 3.65 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -3.49 Total: -13.58 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 1.56 Total: -23.13 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -1.05 Total: -9.45 kcal Atomic # 14 Polarization: 14.93 SS G_CDS: -5.04 Total: 9.89 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -22.49 -6.10 -28.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649024.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.294 kcal (2) G-P(sol) polarization free energy of solvation -22.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds