Wall clock time and date at job start Mon Mar 30 2020 06:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50709 * 109.46847 * 2 1 4 4 C 1.40136 * 119.77726 * 95.79331 * 3 2 1 5 5 C 1.43207 * 120.00589 * 359.97438 * 4 3 2 6 6 N 3.55409 * 100.21542 * 77.73533 * 2 1 3 7 7 C 1.38867 * 119.98710 * 179.72298 * 4 3 2 8 8 C 1.41067 * 119.53957 * 0.25254 * 7 4 3 9 9 C 1.40390 * 120.22270 * 179.97438 * 8 7 4 10 10 H 1.07996 * 120.00289 * 147.14895 * 9 8 7 11 11 C 1.46535 * 119.99713 * 327.15603 * 9 8 7 12 12 N 1.29498 * 120.00373 * 353.99523 * 11 9 8 13 13 Si 1.86801 * 119.99759 * 173.99619 * 11 9 8 14 14 H 1.48498 * 109.47252 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47210 * 119.99610 * 13 11 9 16 16 H 1.48503 * 109.46965 * 239.99627 * 13 11 9 17 17 C 1.41313 * 119.55985 * 0.02562 * 8 7 4 18 18 C 1.37580 * 120.00091 * 359.97438 * 17 8 7 19 19 N 1.48012 * 119.76698 * 179.97438 * 18 17 8 20 20 O 1.31704 * 120.00135 * 7.20718 * 19 18 17 21 21 O 1.31701 * 119.99813 * 187.21117 * 19 18 17 22 22 H 1.08998 * 109.46768 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47076 * 299.99664 * 1 2 3 24 24 H 1.08998 * 109.47040 * 60.00058 * 1 2 3 25 25 H 1.09004 * 109.47076 * 240.00336 * 2 1 3 26 26 H 1.08994 * 109.47746 * 120.00026 * 2 1 3 27 27 H 1.07991 * 120.23178 * 180.22813 * 7 4 3 28 28 H 0.97001 * 120.00361 * 180.02562 * 12 11 9 29 29 H 1.08000 * 119.99938 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3800 2.0362 1.2101 5 6 2.2571 1.3152 2.4413 6 7 2.1603 0.7430 3.4179 7 6 2.8488 3.3433 1.2146 8 6 2.9660 4.0443 -0.0039 9 6 3.4377 5.3665 -0.0160 10 1 4.0161 5.7259 -0.8543 11 6 3.1455 6.2590 1.1089 12 7 2.3566 5.8673 2.0582 13 14 3.9110 7.9617 1.1736 14 1 4.7680 8.1649 -0.0220 15 1 2.8369 8.9869 1.1933 16 1 4.7372 8.0866 2.4013 17 6 2.6043 3.4072 -1.2123 18 6 2.1420 2.1115 -1.1953 19 7 1.7641 1.4494 -2.4640 20 8 2.0027 2.0449 -3.6142 21 8 1.1892 0.2647 -2.4426 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.1213 3.8200 2.1445 28 1 2.1628 6.4582 2.8027 29 1 2.6908 3.9374 -2.1492 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575649024.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:21 Heat of formation + Delta-G solvation = 48.407816 kcal Electronic energy + Delta-G solvation = -17075.819468 eV Core-core repulsion = 14160.572531 eV Total energy + Delta-G solvation = -2915.246937 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.11884 -39.26930 -37.53778 -36.28514 -35.50238 -34.20834 -32.62117 -31.43277 -27.54517 -27.21562 -24.82904 -23.84166 -22.28601 -20.73736 -19.14057 -18.41061 -17.72033 -17.24482 -16.91302 -16.64822 -16.34735 -15.15835 -14.89932 -14.75185 -14.35043 -14.06235 -13.78984 -13.60043 -13.46327 -13.07028 -12.87265 -12.72480 -12.48131 -12.36147 -12.19314 -12.05393 -11.85424 -11.66764 -11.28804 -11.15464 -10.18419 -9.77901 -8.96662 -6.61146 -1.50343 -0.07845 0.29811 0.56432 1.37737 1.44046 1.58436 1.59301 1.90537 2.14566 2.49776 2.85097 3.14220 3.75561 3.89029 4.21475 4.30030 4.42090 4.48433 4.49702 4.65044 4.86289 4.89629 4.98748 5.08681 5.21869 5.35183 5.37335 5.53570 5.64459 5.95057 6.16730 6.34372 6.42627 6.51991 7.97289 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.022147 B = 0.008080 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.958754 B = 3464.683127 C = 4534.497413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.084 4.084 3 C -0.108 4.108 4 C -0.012 4.012 5 C 0.290 3.710 6 N -0.453 5.453 7 C -0.066 4.066 8 C 0.083 3.917 9 C -0.465 4.465 10 H 0.102 0.898 11 C 0.041 3.959 12 N -0.786 5.786 13 Si 0.995 3.005 14 H -0.251 1.251 15 H -0.265 1.265 16 H -0.261 1.261 17 C -0.161 4.161 18 C 0.036 3.964 19 N -0.005 5.005 20 O -0.243 6.243 21 O -0.164 6.164 22 H 0.078 0.922 23 H 0.042 0.958 24 H 0.048 0.952 25 H 0.096 0.904 26 H 0.064 0.936 27 H 0.137 0.863 28 H 0.308 0.692 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.823 0.565 0.151 1.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.121 4.121 3 C -0.114 4.114 4 C -0.017 4.017 5 C -0.024 4.024 6 N -0.129 5.129 7 C -0.089 4.089 8 C 0.079 3.921 9 C -0.491 4.491 10 H 0.120 0.880 11 C -0.183 4.183 12 N -0.408 5.408 13 Si 0.814 3.186 14 H -0.174 1.174 15 H -0.190 1.190 16 H -0.185 1.185 17 C -0.183 4.183 18 C -0.050 4.050 19 N 0.465 4.535 20 O -0.421 6.421 21 O -0.362 6.362 22 H 0.097 0.903 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.114 0.886 26 H 0.083 0.917 27 H 0.155 0.845 28 H 0.121 0.879 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.732 0.088 2.330 2.444 hybrid contribution 0.020 0.721 -0.711 1.013 sum 0.752 0.809 1.619 1.960 Atomic orbital electron populations 1.21606 0.93729 1.02663 1.00734 1.20798 0.97398 0.90547 1.03347 1.19145 1.05697 0.97863 0.88652 1.15437 1.07253 0.93579 0.85427 1.25496 0.92436 0.92083 0.92377 1.81134 1.10377 1.09992 1.11374 1.21989 0.96697 0.89968 1.00230 1.17471 0.91819 0.93904 0.88883 1.21125 1.29333 0.94282 1.04366 0.87974 1.28290 0.92442 1.04999 0.92563 1.68988 1.23411 1.40316 1.08042 0.84916 0.78988 0.74455 0.80201 1.17403 1.18981 1.18538 1.21280 1.03921 0.92393 1.00662 1.19817 1.11132 0.94300 0.79800 1.50731 0.96765 1.01215 1.04773 1.96218 1.63216 1.66708 1.15932 1.96077 1.41719 1.02597 1.95845 0.90288 0.93900 0.93336 0.88601 0.91698 0.84527 0.87928 0.84901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 9.34 71.98 0.67 -3.36 15 2 C -0.08 -2.80 4.99 29.85 0.15 -2.65 15 3 C -0.11 -4.13 5.20 -19.34 -0.10 -4.23 15 4 C -0.01 -0.48 5.72 -21.42 -0.12 -0.60 15 5 C 0.29 10.92 13.66 88.33 1.21 12.12 15 6 N -0.45 -17.37 18.54 19.01 0.35 -17.02 15 7 C -0.07 -2.74 8.40 23.11 0.19 -2.54 15 8 C 0.08 3.55 5.55 -21.31 -0.12 3.43 15 9 C -0.47 -19.44 9.29 24.96 0.23 -19.21 15 10 H 0.10 4.06 7.95 -2.91 -0.02 4.04 15 11 C 0.04 1.60 5.47 87.20 0.48 2.08 15 12 N -0.79 -31.89 11.04 23.21 0.26 -31.64 15 13 Si 1.00 29.51 29.65 68.60 2.03 31.55 15 14 H -0.25 -7.35 7.11 99.48 0.71 -6.64 15 15 H -0.27 -7.75 7.11 99.48 0.71 -7.04 15 16 H -0.26 -7.49 7.11 99.48 0.71 -6.78 15 17 C -0.16 -6.76 9.33 22.87 0.21 -6.55 15 18 C 0.04 1.49 6.83 36.28 0.25 1.73 15 19 N -0.01 -0.21 4.98 -46.70 -0.23 -0.44 15 20 O -0.24 -10.57 19.14 3.51 0.07 -10.50 15 21 O -0.16 -6.38 14.08 3.51 0.05 -6.33 15 22 H 0.08 2.05 8.14 -2.39 -0.02 2.03 15 23 H 0.04 1.34 8.14 -2.39 -0.02 1.32 15 24 H 0.05 1.61 6.70 -2.39 -0.02 1.60 15 25 H 0.10 3.23 5.70 -2.39 -0.01 3.22 15 26 H 0.06 2.07 6.86 -2.39 -0.02 2.05 15 27 H 0.14 5.76 6.42 -2.92 -0.02 5.74 15 28 H 0.31 11.06 8.27 -92.71 -0.77 10.30 15 29 H 0.13 5.47 7.57 -2.91 -0.02 5.44 15 Total: -1.00 -45.69 268.29 6.78 -38.90 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 1.21 Total: 15.27 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 3.05 Total: -19.79 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: 0.38 Total: -49.10 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: 0.12 Total: -16.83 kcal Atomic # 14 Polarization: 29.51 SS G_CDS: 2.03 Total: 31.55 kcal Total: -45.69 6.78 -38.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649024.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.311 kcal (2) G-P(sol) polarization free energy of solvation -45.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds