Wall clock time and date at job start Mon Mar 30 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.46974 * 2 1 4 4 C 1.37572 * 119.99741 * 264.99563 * 3 2 1 5 5 C 1.38481 * 120.46924 * 179.97438 * 4 3 2 6 6 N 1.48016 * 119.77864 * 179.97438 * 5 4 3 7 7 O 1.31696 * 120.00250 * 0.02562 * 6 5 4 8 8 O 1.31701 * 119.99644 * 180.02562 * 6 5 4 9 9 C 1.40139 * 120.44458 * 0.02562 * 5 4 3 10 10 C 1.43199 * 120.01133 * 179.97438 * 9 5 4 11 11 N 6.86732 * 109.49241 * 359.63575 * 2 1 3 12 12 C 1.38878 * 119.98434 * 359.97438 * 9 5 4 13 13 C 1.41061 * 119.53932 * 0.02562 * 12 9 5 14 14 C 1.40391 * 120.21833 * 179.97438 * 13 12 9 15 15 H 1.08009 * 119.99877 * 155.13545 * 14 13 12 16 16 C 1.46527 * 120.00238 * 335.13636 * 14 13 12 17 17 N 1.29508 * 120.00287 * 344.86524 * 16 14 13 18 18 Si 1.86806 * 120.00263 * 164.86610 * 16 14 13 19 19 H 1.48500 * 109.46791 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47202 * 120.00053 * 18 16 14 21 21 H 1.48502 * 109.46968 * 239.99836 * 18 16 14 22 22 H 1.08999 * 109.47358 * 299.99984 * 1 2 3 23 23 H 1.09001 * 109.47079 * 60.00607 * 1 2 3 24 24 H 1.09007 * 109.47258 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47064 * 239.99560 * 2 1 3 26 26 H 1.09004 * 109.46743 * 119.99771 * 2 1 3 27 27 H 1.08007 * 119.76880 * 0.25607 * 4 3 2 28 28 H 1.08002 * 120.23086 * 179.97438 * 12 9 5 29 29 H 0.96995 * 120.00688 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3595 2.0347 -1.1869 5 6 2.8215 3.3401 -1.1983 6 7 3.1697 3.9855 -2.4840 7 8 3.0393 3.3186 -3.6122 8 8 3.6099 5.2266 -2.4998 9 6 2.9626 4.0539 -0.0006 10 6 3.4417 5.4032 -0.0231 11 7 3.8215 6.4736 -0.0412 12 6 2.6377 3.4524 1.2082 13 6 2.1671 2.1226 1.2191 14 6 1.8350 1.5005 2.4330 15 1 1.1271 0.6848 2.4459 16 6 2.4487 1.9577 3.6826 17 7 3.4965 2.7182 3.6492 18 14 1.7198 1.4437 5.3240 19 1 0.5338 0.5811 5.0905 20 1 2.7353 0.6899 6.1022 21 1 1.3106 2.6521 6.0840 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 2.2510 1.4962 -2.1169 28 1 2.7453 3.9987 2.1337 29 1 3.9025 3.0212 4.4763 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575649060.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:48 Heat of formation + Delta-G solvation = 40.364166 kcal Electronic energy + Delta-G solvation = -17010.436146 eV Core-core repulsion = 14094.840410 eV Total energy + Delta-G solvation = -2915.595736 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.10708 -37.15103 -35.79194 -34.66443 -33.41318 -32.94961 -30.88041 -29.31562 -27.22872 -24.29967 -23.82351 -21.66733 -20.49785 -19.06294 -17.63364 -16.83062 -16.39459 -15.60037 -14.89109 -14.69123 -14.06758 -13.67971 -13.33547 -13.18973 -12.93850 -12.55235 -12.28506 -12.20465 -12.00127 -11.83117 -11.46807 -11.31529 -10.89348 -10.81878 -10.44033 -10.28306 -10.12528 -9.94980 -9.63862 -9.52038 -8.54740 -8.25301 -7.93304 -5.39829 0.46635 1.86210 2.17402 2.46979 2.58126 2.62770 2.65973 3.13163 3.42710 3.55509 4.00403 4.67193 4.71883 5.40231 5.49740 5.66027 5.79639 5.87818 5.99195 6.09478 6.15270 6.30995 6.34823 6.52260 6.57737 6.69155 6.87962 6.95456 7.07480 7.25332 7.43361 7.64134 7.83581 8.20750 8.33005 8.86834 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.022266 B = 0.008386 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.201274 B = 3338.111901 C = 4444.793127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.063 4.063 3 C -0.175 4.175 4 C -0.009 4.009 5 C -0.111 4.111 6 N 0.038 4.962 7 O -0.291 6.291 8 O -0.291 6.291 9 C 0.042 3.958 10 C 0.266 3.734 11 N -0.424 5.424 12 C -0.098 4.098 13 C 0.099 3.901 14 C -0.340 4.340 15 H 0.115 0.885 16 C 0.053 3.947 17 N -0.703 5.703 18 Si 0.933 3.067 19 H -0.245 1.245 20 H -0.261 1.261 21 H -0.259 1.259 22 H 0.058 0.942 23 H 0.050 0.950 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.129 0.871 28 H 0.144 0.856 29 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.070 -8.340 7.680 12.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 C -0.179 4.179 4 C -0.029 4.029 5 C -0.212 4.212 6 N 0.471 4.529 7 O -0.454 6.454 8 O -0.451 6.451 9 C 0.037 3.963 10 C -0.049 4.049 11 N -0.101 5.101 12 C -0.122 4.122 13 C 0.095 3.905 14 C -0.364 4.364 15 H 0.133 0.867 16 C -0.180 4.180 17 N -0.321 5.321 18 Si 0.753 3.247 19 H -0.168 1.168 20 H -0.185 1.185 21 H -0.183 1.183 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.146 0.854 28 H 0.162 0.838 29 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.333 -6.651 7.961 11.242 hybrid contribution -0.045 -0.235 0.159 0.287 sum -4.379 -6.886 8.120 11.512 Atomic orbital electron populations 1.21782 0.95993 1.00559 1.02126 1.20202 0.95100 0.92733 1.01953 1.19694 1.10245 0.96513 0.91414 1.20154 0.93500 0.90652 0.98567 1.19479 1.26391 0.96183 0.79152 1.50032 0.97350 1.01757 1.03800 1.96108 1.65727 1.64537 1.19011 1.96178 1.55266 0.98021 1.95640 1.15413 1.01865 0.86183 0.92822 1.25460 0.94086 0.92828 0.92504 1.80968 1.08232 1.11901 1.08998 1.21612 1.01099 0.94917 0.94558 1.17600 0.89661 0.90648 0.92592 1.21807 1.14646 1.10801 0.89158 0.86681 1.28001 0.93518 0.92746 1.03748 1.69043 1.11890 1.17009 1.34155 0.85778 0.80844 0.80562 0.77466 1.16797 1.18509 1.18324 0.92306 0.93072 0.93412 0.92296 0.90877 0.85360 0.83848 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.78 37.16 0.36 -1.55 15 2 C -0.06 -0.91 5.40 -27.88 -0.15 -1.06 15 3 C -0.18 -3.19 5.21 -103.70 -0.54 -3.73 15 4 C -0.01 -0.18 9.16 -39.74 -0.36 -0.54 15 5 C -0.11 -2.56 6.93 -79.15 -0.55 -3.11 15 6 N 0.04 0.98 4.98 34.35 0.17 1.15 15 7 O -0.29 -7.55 19.13 -31.57 -0.60 -8.16 15 8 O -0.29 -8.06 16.84 -31.57 -0.53 -8.59 15 9 C 0.04 0.95 5.72 -107.02 -0.61 0.33 15 10 C 0.27 6.29 12.64 -22.48 -0.28 6.01 15 11 N -0.42 -10.32 18.23 41.83 0.76 -9.55 15 12 C -0.10 -2.00 8.46 -38.28 -0.32 -2.32 15 13 C 0.10 1.90 5.61 -106.85 -0.60 1.30 15 14 C -0.34 -5.84 8.40 -35.43 -0.30 -6.13 15 15 H 0.12 1.76 6.12 -52.48 -0.32 1.44 15 16 C 0.05 0.87 5.36 -15.19 -0.08 0.79 15 17 N -0.70 -12.37 10.96 55.98 0.61 -11.76 15 18 Si 0.93 11.95 29.67 -169.99 -5.04 6.90 15 19 H -0.25 -3.07 7.11 56.52 0.40 -2.67 15 20 H -0.26 -3.37 7.11 56.52 0.40 -2.97 15 21 H -0.26 -3.39 7.11 56.52 0.40 -2.99 15 22 H 0.06 0.77 7.31 -51.93 -0.38 0.39 15 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 15 25 H 0.06 0.80 8.05 -51.93 -0.42 0.38 15 26 H 0.07 1.03 7.04 -51.93 -0.37 0.66 15 27 H 0.13 2.43 7.55 -52.48 -0.40 2.03 15 28 H 0.14 2.89 6.12 -52.49 -0.32 2.57 15 29 H 0.31 4.75 8.27 -40.82 -0.34 4.41 15 LS Contribution 270.55 15.07 4.08 4.08 Total: -1.00 -26.17 270.55 -6.17 -32.34 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -2.18 Total: 3.61 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -3.44 Total: -10.02 kcal Atomic # 7 Polarization: -21.71 SS G_CDS: 1.55 Total: -20.16 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -1.14 Total: -16.74 kcal Atomic # 14 Polarization: 11.95 SS G_CDS: -5.04 Total: 6.90 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -26.17 -6.17 -32.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649060.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.709 kcal (2) G-P(sol) polarization free energy of solvation -26.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds