Wall clock time and date at job start Mon Mar 30 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.46974 * 2 1 4 4 C 1.37572 * 119.99741 * 264.99563 * 3 2 1 5 5 C 1.38481 * 120.46924 * 179.97438 * 4 3 2 6 6 N 1.48016 * 119.77864 * 179.97438 * 5 4 3 7 7 O 1.31696 * 120.00250 * 0.02562 * 6 5 4 8 8 O 1.31701 * 119.99644 * 180.02562 * 6 5 4 9 9 C 1.40139 * 120.44458 * 0.02562 * 5 4 3 10 10 C 1.43199 * 120.01133 * 179.97438 * 9 5 4 11 11 N 6.86732 * 109.49241 * 359.63575 * 2 1 3 12 12 C 1.38878 * 119.98434 * 359.97438 * 9 5 4 13 13 C 1.41061 * 119.53932 * 0.02562 * 12 9 5 14 14 C 1.40391 * 120.21833 * 179.97438 * 13 12 9 15 15 H 1.08009 * 119.99877 * 155.13545 * 14 13 12 16 16 C 1.46527 * 120.00238 * 335.13636 * 14 13 12 17 17 N 1.29508 * 120.00287 * 344.86524 * 16 14 13 18 18 Si 1.86806 * 120.00263 * 164.86610 * 16 14 13 19 19 H 1.48500 * 109.46791 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47202 * 120.00053 * 18 16 14 21 21 H 1.48502 * 109.46968 * 239.99836 * 18 16 14 22 22 H 1.08999 * 109.47358 * 299.99984 * 1 2 3 23 23 H 1.09001 * 109.47079 * 60.00607 * 1 2 3 24 24 H 1.09007 * 109.47258 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47064 * 239.99560 * 2 1 3 26 26 H 1.09004 * 109.46743 * 119.99771 * 2 1 3 27 27 H 1.08007 * 119.76880 * 0.25607 * 4 3 2 28 28 H 1.08002 * 120.23086 * 179.97438 * 12 9 5 29 29 H 0.96995 * 120.00688 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3595 2.0347 -1.1869 5 6 2.8215 3.3401 -1.1983 6 7 3.1697 3.9855 -2.4840 7 8 3.0393 3.3186 -3.6122 8 8 3.6099 5.2266 -2.4998 9 6 2.9626 4.0539 -0.0006 10 6 3.4417 5.4032 -0.0231 11 7 3.8215 6.4736 -0.0412 12 6 2.6377 3.4524 1.2082 13 6 2.1671 2.1226 1.2191 14 6 1.8350 1.5005 2.4330 15 1 1.1271 0.6848 2.4459 16 6 2.4487 1.9577 3.6826 17 7 3.4965 2.7182 3.6492 18 14 1.7198 1.4437 5.3240 19 1 0.5338 0.5811 5.0905 20 1 2.7353 0.6899 6.1022 21 1 1.3106 2.6521 6.0840 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 2.2510 1.4962 -2.1169 28 1 2.7453 3.9987 2.1337 29 1 3.9025 3.0212 4.4763 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575649060.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:48 Heat of formation + Delta-G solvation = 26.042275 kcal Electronic energy + Delta-G solvation = -17011.057189 eV Core-core repulsion = 14094.840410 eV Total energy + Delta-G solvation = -2916.216780 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.68800 -38.63492 -37.53638 -36.26527 -34.85954 -34.45382 -32.50112 -30.73405 -28.86139 -25.94083 -25.17290 -23.23900 -21.91005 -20.65667 -19.25520 -18.36149 -17.93647 -16.99258 -16.37972 -16.26232 -15.49520 -15.21350 -14.77261 -14.53707 -14.44323 -14.11263 -13.79944 -13.69166 -13.55096 -13.12824 -12.81495 -12.65203 -12.33422 -11.92112 -11.68306 -11.57277 -11.51599 -11.47036 -11.31350 -11.24606 -10.18836 -9.87499 -9.45528 -7.01488 -1.33751 0.27645 0.67071 1.21908 1.36599 1.46751 1.69399 1.76739 1.97728 2.07052 2.34968 3.01411 3.06280 3.90515 4.10576 4.23702 4.36883 4.44468 4.63489 4.77493 4.80681 4.91423 4.95359 5.25285 5.28170 5.32557 5.42119 5.54838 5.64444 5.73646 5.80951 5.96672 6.21096 6.54746 6.67344 7.36525 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.022266 B = 0.008386 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.201274 B = 3338.111901 C = 4444.793127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.069 4.069 3 C -0.124 4.124 4 C -0.049 4.049 5 C -0.092 4.092 6 N 0.040 4.960 7 O -0.409 6.409 8 O -0.431 6.431 9 C -0.007 4.007 10 C 0.273 3.727 11 N -0.460 5.460 12 C -0.041 4.041 13 C 0.023 3.977 14 C -0.209 4.209 15 H 0.164 0.836 16 C 0.008 3.992 17 N -0.696 5.696 18 Si 1.008 2.992 19 H -0.224 1.224 20 H -0.257 1.257 21 H -0.263 1.263 22 H 0.065 0.935 23 H 0.038 0.962 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.127 0.873 28 H 0.152 0.848 29 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.742 -13.586 15.982 22.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 C -0.128 4.128 4 C -0.069 4.069 5 C -0.207 4.207 6 N 0.422 4.578 7 O -0.538 6.538 8 O -0.554 6.554 9 C -0.012 4.012 10 C -0.040 4.040 11 N -0.138 5.138 12 C -0.067 4.067 13 C 0.018 3.982 14 C -0.232 4.232 15 H 0.182 0.818 16 C -0.226 4.226 17 N -0.315 5.315 18 Si 0.824 3.176 19 H -0.145 1.145 20 H -0.181 1.181 21 H -0.187 1.187 22 H 0.084 0.916 23 H 0.058 0.942 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.114 0.886 27 H 0.145 0.855 28 H 0.170 0.830 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.880 -11.674 15.834 20.841 hybrid contribution 0.490 0.614 -0.709 1.058 sum -6.390 -11.060 15.125 19.797 Atomic orbital electron populations 1.21782 0.94022 1.02529 1.01990 1.20440 0.96597 0.89782 1.03750 1.20157 1.05016 0.97855 0.89813 1.20223 0.96905 0.90063 0.99677 1.19965 1.24954 0.97060 0.78723 1.49861 1.02285 1.01653 1.03958 1.95972 1.72104 1.65198 1.20530 1.96058 1.62991 1.00453 1.95853 1.15551 1.06000 0.86041 0.93653 1.25841 0.93363 0.93206 0.91576 1.80892 1.09899 1.12931 1.10074 1.21896 0.95712 0.95418 0.93672 1.17924 0.94918 0.91188 0.94127 1.23218 1.05859 1.05692 0.88468 0.81839 1.29174 0.93933 0.92766 1.06711 1.69024 1.11672 1.13513 1.37275 0.84655 0.80623 0.80302 0.72039 1.14511 1.18123 1.18707 0.91623 0.94238 0.90442 0.91270 0.88556 0.85515 0.83044 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.78 71.98 0.70 -2.11 15 2 C -0.07 -1.57 5.40 29.85 0.16 -1.41 15 3 C -0.12 -4.02 5.21 -19.27 -0.10 -4.12 15 4 C -0.05 -2.03 9.16 22.17 0.20 -1.83 15 5 C -0.09 -4.63 6.93 36.90 0.26 -4.37 15 6 N 0.04 2.43 4.98 -45.23 -0.23 2.20 15 7 O -0.41 -25.45 19.13 3.52 0.07 -25.38 15 8 O -0.43 -28.43 16.84 3.51 0.06 -28.37 15 9 C -0.01 -0.34 5.72 -21.42 -0.12 -0.46 15 10 C 0.27 14.05 12.64 88.33 1.12 15.17 15 11 N -0.46 -24.51 18.23 19.00 0.35 -24.16 15 12 C -0.04 -1.57 8.46 23.12 0.20 -1.37 15 13 C 0.02 0.74 5.61 -21.31 -0.12 0.62 15 14 C -0.21 -5.04 8.40 24.96 0.21 -4.83 15 15 H 0.16 2.80 6.12 -2.91 -0.02 2.78 15 16 C 0.01 0.19 5.36 87.20 0.47 0.66 15 17 N -0.70 -19.01 10.96 23.21 0.25 -18.75 15 18 Si 1.01 15.07 29.67 68.60 2.04 17.10 15 19 H -0.22 -2.80 7.11 99.48 0.71 -2.09 15 20 H -0.26 -4.00 7.11 99.48 0.71 -3.29 15 21 H -0.26 -4.37 7.11 99.48 0.71 -3.66 15 22 H 0.06 1.16 7.31 -2.39 -0.02 1.14 15 23 H 0.04 0.88 8.14 -2.39 -0.02 0.86 15 24 H 0.08 1.11 8.14 -2.38 -0.02 1.09 15 25 H 0.07 1.55 8.05 -2.39 -0.02 1.53 15 26 H 0.10 1.78 7.04 -2.38 -0.02 1.76 15 27 H 0.13 5.22 7.55 -2.91 -0.02 5.20 15 28 H 0.15 5.41 6.12 -2.91 -0.02 5.39 15 29 H 0.33 7.56 8.27 -92.71 -0.77 6.79 15 Total: -1.00 -70.63 270.55 6.71 -63.92 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 1.20 Total: 17.50 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 2.97 Total: -4.06 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.38 Total: -40.72 kcal Atomic # 8 Polarization: -53.88 SS G_CDS: 0.13 Total: -53.75 kcal Atomic # 14 Polarization: 15.07 SS G_CDS: 2.04 Total: 17.10 kcal Total: -70.63 6.71 -63.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649060.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.958 kcal (2) G-P(sol) polarization free energy of solvation -70.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds