Wall clock time and date at job start Mon Mar 30 2020 06:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46862 * 2 1 4 4 C 1.37577 * 119.76365 * 264.97589 * 3 2 1 5 5 C 1.41315 * 119.99650 * 180.02562 * 4 3 2 6 6 C 1.40389 * 120.21926 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99757 * 25.20048 * 6 5 4 8 8 C 1.46531 * 119.99841 * 205.20443 * 6 5 4 9 9 N 1.29500 * 120.00442 * 12.46481 * 8 6 5 10 10 Si 1.86803 * 119.99815 * 192.46241 * 8 6 5 11 11 H 1.48501 * 109.47202 * 59.99625 * 10 8 6 12 12 H 1.48498 * 109.47335 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46924 * 300.00103 * 10 8 6 14 14 C 1.41064 * 119.56185 * 359.97438 * 5 4 3 15 15 C 1.38871 * 119.53887 * 359.72769 * 14 5 4 16 16 C 1.43199 * 120.00796 * 180.28842 * 15 14 5 17 17 N 5.95923 * 102.77717 * 36.32959 * 2 1 3 18 18 C 1.38478 * 119.76849 * 85.00072 * 3 2 1 19 19 N 1.48024 * 119.77369 * 359.97438 * 18 3 2 20 20 O 1.31699 * 119.99920 * 90.00016 * 19 18 3 21 21 O 1.31699 * 119.99772 * 269.72400 * 19 18 3 22 22 H 1.09003 * 109.47411 * 60.00017 * 1 2 3 23 23 H 1.09001 * 109.47237 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47431 * 299.99990 * 1 2 3 25 25 H 1.08997 * 109.46845 * 240.00032 * 2 1 3 26 26 H 1.09000 * 109.46714 * 119.99755 * 2 1 3 27 27 H 1.07991 * 120.00086 * 0.02562 * 4 3 2 28 28 H 0.96997 * 120.00041 * 180.02562 * 9 8 6 29 29 H 1.08000 * 120.22858 * 179.97438 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3585 2.0299 -1.1897 5 6 2.8305 3.3619 -1.1954 6 6 3.1653 3.9878 -2.4066 7 1 2.7105 3.6575 -3.3288 8 6 4.1318 5.0891 -2.4196 9 7 4.8545 5.3288 -1.3721 10 14 4.3214 6.1473 -3.9472 11 1 3.0260 6.8030 -4.2591 12 1 5.3563 7.1845 -3.7056 13 1 4.7330 5.2952 -5.0917 14 6 2.9630 4.0585 0.0241 15 6 2.6224 3.4277 1.2135 16 6 2.7472 4.1275 2.4566 17 7 2.8480 4.6820 3.4430 18 6 2.1627 2.1040 1.1975 19 7 1.8072 1.4338 2.4685 20 8 2.7202 0.7566 3.1336 21 8 0.5794 1.5193 2.9371 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.2539 1.4901 -2.1191 28 1 5.4940 6.0580 -1.3806 29 1 3.3231 5.0767 0.0323 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575650037.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:31 Heat of formation + Delta-G solvation = 39.036327 kcal Electronic energy + Delta-G solvation = -17050.724239 eV Core-core repulsion = 14135.070924 eV Total energy + Delta-G solvation = -2915.653315 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.92188 -39.12998 -37.84876 -36.30130 -35.40463 -34.68884 -32.80149 -30.56484 -28.89630 -26.00948 -24.94039 -24.18464 -22.21166 -19.78949 -19.42049 -19.22953 -18.40126 -17.68948 -16.83949 -15.63030 -15.50526 -15.22949 -15.12547 -14.85828 -14.51808 -14.11250 -13.96379 -13.88615 -13.49362 -12.98348 -12.88889 -12.67601 -12.57690 -12.35887 -12.11337 -12.09423 -11.92865 -11.72259 -11.69114 -11.32066 -10.05027 -9.75521 -9.08165 -6.73089 -1.24066 -0.21880 0.42793 0.50862 1.28750 1.39526 1.43473 1.56939 1.83813 2.09438 2.36701 2.68926 3.20653 3.73342 4.00306 4.24967 4.37543 4.45093 4.59512 4.61559 4.72067 4.81186 4.92714 4.99362 5.12864 5.28189 5.35730 5.48252 5.64035 5.64787 5.72257 6.05981 6.18779 6.36495 6.50406 7.80386 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.025435 B = 0.007619 C = 0.006212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.601597 B = 3674.307978 C = 4506.099738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C 0.009 3.991 4 C -0.206 4.206 5 C 0.084 3.916 6 C -0.407 4.407 7 H 0.122 0.878 8 C 0.033 3.967 9 N -0.762 5.762 10 Si 1.000 3.000 11 H -0.251 1.251 12 H -0.270 1.270 13 H -0.246 1.246 14 C -0.111 4.111 15 C 0.019 3.981 16 C 0.259 3.741 17 N -0.447 5.447 18 C -0.164 4.164 19 N 0.005 4.995 20 O -0.204 6.204 21 O -0.170 6.170 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.038 0.962 25 H 0.108 0.892 26 H 0.046 0.954 27 H 0.149 0.851 28 H 0.313 0.687 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.829 -1.702 -9.459 9.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 C 0.007 3.993 4 C -0.225 4.225 5 C 0.081 3.919 6 C -0.430 4.430 7 H 0.140 0.860 8 C -0.195 4.195 9 N -0.381 5.381 10 Si 0.818 3.182 11 H -0.175 1.175 12 H -0.194 1.194 13 H -0.170 1.170 14 C -0.134 4.134 15 C 0.014 3.986 16 C -0.055 4.055 17 N -0.123 5.123 18 C -0.247 4.247 19 N 0.497 4.503 20 O -0.403 6.403 21 O -0.379 6.379 22 H 0.091 0.909 23 H 0.099 0.901 24 H 0.058 0.942 25 H 0.126 0.874 26 H 0.065 0.935 27 H 0.166 0.834 28 H 0.126 0.874 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.237 -0.393 -8.425 8.525 hybrid contribution 0.258 0.164 0.334 0.452 sum -0.979 -0.229 -8.092 8.154 Atomic orbital electron populations 1.21761 0.92992 1.02996 1.02403 1.20732 0.97771 0.91118 1.03432 1.19100 0.95047 0.95981 0.89177 1.21107 1.11133 0.94502 0.95793 1.17902 0.90002 0.91362 0.92680 1.21664 1.16165 1.09825 0.95348 0.85980 1.28657 0.92503 0.97006 1.01355 1.69049 1.12935 1.24261 1.31895 0.84922 0.79829 0.77171 0.76231 1.17452 1.19402 1.16981 1.21607 1.02101 1.00360 0.89318 1.15343 1.05668 0.89917 0.87647 1.26315 0.92771 0.93319 0.93138 1.81064 1.10382 1.09671 1.11210 1.19277 1.31443 0.94397 0.79611 1.50738 1.00552 0.96279 1.02728 1.96181 1.41734 1.41589 1.60753 1.96146 1.01717 1.66669 1.73355 0.90905 0.90122 0.94247 0.87363 0.93509 0.83373 0.87388 0.84473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 9.89 71.98 0.71 -3.40 15 2 C -0.09 -2.98 5.74 29.85 0.17 -2.81 15 3 C 0.01 0.34 5.12 -19.96 -0.10 0.24 15 4 C -0.21 -7.64 9.42 22.87 0.22 -7.42 15 5 C 0.08 3.46 5.61 -21.31 -0.12 3.34 15 6 C -0.41 -15.35 9.32 24.96 0.23 -15.12 15 7 H 0.12 4.02 7.96 -2.91 -0.02 4.00 15 8 C 0.03 1.17 5.41 87.20 0.47 1.64 15 9 N -0.76 -29.89 10.84 23.21 0.25 -29.64 15 10 Si 1.00 26.36 29.66 68.60 2.03 28.39 15 11 H -0.25 -6.52 7.11 99.48 0.71 -5.81 15 12 H -0.27 -7.03 7.11 99.48 0.71 -6.32 15 13 H -0.25 -6.18 7.11 99.48 0.71 -5.48 15 14 C -0.11 -4.89 8.46 23.11 0.20 -4.70 15 15 C 0.02 0.89 5.72 -21.42 -0.12 0.77 15 16 C 0.26 12.22 14.78 88.33 1.31 13.53 15 17 N -0.45 -21.39 18.54 19.01 0.35 -21.04 15 18 C -0.16 -7.33 6.26 36.89 0.23 -7.10 15 19 N 0.00 0.21 3.23 -45.23 -0.15 0.07 15 20 O -0.20 -9.84 19.93 3.52 0.07 -9.77 15 21 O -0.17 -7.89 18.92 3.52 0.07 -7.83 15 22 H 0.07 1.88 8.14 -2.39 -0.02 1.86 15 23 H 0.08 1.86 8.14 -2.39 -0.02 1.84 15 24 H 0.04 1.31 7.07 -2.38 -0.02 1.29 15 25 H 0.11 2.80 8.04 -2.39 -0.02 2.78 15 26 H 0.05 1.64 7.54 -2.39 -0.02 1.62 15 27 H 0.15 4.57 8.06 -2.92 -0.02 4.55 15 28 H 0.31 10.87 8.27 -92.71 -0.77 10.11 15 29 H 0.14 6.16 6.04 -2.91 -0.02 6.14 15 Total: -1.00 -51.27 277.44 7.02 -44.25 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 1.20 Total: 16.58 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 3.19 Total: -21.02 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 0.46 Total: -50.61 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.14 Total: -17.59 kcal Atomic # 14 Polarization: 26.36 SS G_CDS: 2.03 Total: 28.39 kcal Total: -51.27 7.02 -44.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650037.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.286 kcal (2) G-P(sol) polarization free energy of solvation -51.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds