Wall clock time and date at job start Mon Mar 30 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37748 * 119.98029 * 2 1 4 4 F 1.35101 * 120.19173 * 359.96884 * 3 2 1 5 5 C 1.41111 * 119.62289 * 180.26855 * 3 2 1 6 6 C 1.41139 * 120.20252 * 179.69848 * 5 3 2 7 7 H 1.07994 * 119.99442 * 24.71918 * 6 5 3 8 8 C 1.39871 * 119.99877 * 204.72257 * 6 5 3 9 9 N 1.30903 * 120.00455 * 17.86036 * 8 6 5 10 10 Si 1.86808 * 119.99720 * 197.86021 * 8 6 5 11 11 H 1.48502 * 109.46702 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.46971 * 120.00104 * 10 8 6 13 13 H 1.48495 * 109.46994 * 240.00055 * 10 8 6 14 14 C 1.40825 * 119.60293 * 359.72375 * 5 3 2 15 15 C 1.36344 * 119.95446 * 359.97438 * 14 5 3 16 16 C 1.39148 * 119.98422 * 179.73176 * 2 1 3 17 17 O 1.35678 * 119.79785 * 0.03208 * 16 2 1 18 18 C 1.42895 * 117.00319 * 179.71879 * 17 16 2 19 19 F 1.39904 * 109.47161 * 59.99870 * 18 17 16 20 20 F 1.39900 * 109.46943 * 299.99797 * 18 17 16 21 21 H 1.09000 * 109.47163 * 270.26126 * 1 2 3 22 22 H 1.08997 * 109.47160 * 30.26151 * 1 2 3 23 23 H 1.09001 * 109.47314 * 150.26113 * 1 2 3 24 24 H 0.97005 * 120.00320 * 179.97438 * 9 8 6 25 25 H 1.07992 * 120.02775 * 179.97438 * 14 5 3 26 26 H 1.08000 * 119.81343 * 179.97438 * 15 14 5 27 27 H 1.09007 * 109.47407 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1932 0.0000 4 9 1.5233 2.3652 -0.0006 5 6 3.6064 1.1844 -0.0057 6 6 4.3240 2.3997 -0.0122 7 1 3.8685 3.2977 0.3781 8 6 5.6249 2.4410 -0.5243 9 7 6.0532 1.4789 -1.3018 10 14 6.7513 3.8692 -0.0986 11 1 6.0331 4.8182 0.7896 12 1 7.9592 3.3568 0.5968 13 1 7.1566 4.5683 -1.3445 14 6 4.2944 -0.0444 -0.0055 15 6 3.5963 -1.2155 0.0008 16 6 2.2024 -1.2052 0.0056 17 8 1.5196 -2.3776 0.0105 18 6 2.2932 -3.5791 0.0099 19 9 3.1045 -3.6119 1.1492 20 9 3.0958 -3.6163 -1.1354 21 1 -0.3633 0.0047 1.0276 22 1 -0.3633 0.8876 -0.5179 23 1 -0.3634 -0.8923 -0.5098 24 1 6.9554 1.5077 -1.6572 25 1 5.3742 -0.0591 -0.0103 26 1 4.1263 -2.1565 0.0005 27 1 1.6259 -4.4410 0.0145 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575660829.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:53 Heat of formation + Delta-G solvation = -183.327182 kcal Electronic energy + Delta-G solvation = -17909.523648 eV Core-core repulsion = 14410.078436 eV Total energy + Delta-G solvation = -3499.445212 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.82697 -47.32738 -46.83263 -38.75134 -36.32787 -33.78405 -31.41725 -29.38052 -26.26289 -25.91212 -24.33896 -21.10018 -20.74809 -18.20133 -17.51048 -17.38394 -17.16628 -15.84207 -15.13446 -15.00585 -14.38116 -13.99194 -13.77824 -13.74604 -13.26156 -13.07637 -12.75031 -12.53155 -12.40906 -12.19838 -11.73927 -11.69683 -11.64106 -11.18334 -10.85900 -10.70274 -10.15604 -9.85495 -9.74134 -9.21069 -7.45817 -7.31060 -6.89945 -4.43094 2.52087 2.62324 3.02596 3.05398 3.09963 3.31323 3.85364 3.98415 4.38544 4.77919 5.10577 5.35985 5.77550 5.86688 5.93942 6.20084 6.28844 6.39864 6.56803 6.83751 7.00448 7.08208 7.36815 7.66371 7.72399 7.87883 8.02980 8.41583 8.64286 8.73161 10.03463 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.026519 B = 0.008126 C = 0.006580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.587649 B = 3445.058148 C = 4254.387497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.097 4.097 3 C -0.010 4.010 4 F -0.155 7.155 5 C 0.076 3.924 6 C -0.448 4.448 7 H 0.085 0.915 8 C 0.075 3.925 9 N -0.787 5.787 10 Si 0.914 3.086 11 H -0.258 1.258 12 H -0.270 1.270 13 H -0.273 1.273 14 C -0.120 4.120 15 C -0.159 4.159 16 C -0.016 4.016 17 O -0.325 6.325 18 C 0.412 3.588 19 F -0.207 7.207 20 F -0.206 7.206 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.284 0.716 25 H 0.131 0.869 26 H 0.108 0.892 27 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.673 -6.590 1.659 7.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 C -0.031 4.031 4 F -0.134 7.134 5 C 0.073 3.927 6 C -0.477 4.477 7 H 0.103 0.897 8 C -0.144 4.144 9 N -0.412 5.412 10 Si 0.738 3.262 11 H -0.182 1.182 12 H -0.195 1.195 13 H -0.198 1.198 14 C -0.139 4.139 15 C -0.178 4.178 16 C -0.058 4.058 17 O -0.243 6.243 18 C 0.321 3.679 19 F -0.189 7.189 20 F -0.187 7.187 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.149 0.851 26 H 0.126 0.874 27 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.650 -6.622 1.509 7.711 hybrid contribution 0.892 0.614 0.027 1.083 sum -2.759 -6.009 1.536 6.788 Atomic orbital electron populations 1.20417 0.91948 1.01663 1.01192 1.18505 0.94918 0.89649 1.06811 1.17176 0.89780 0.79245 1.16888 1.91269 1.80432 1.46509 1.95145 1.17641 0.88912 0.94641 0.91514 1.19505 0.97729 0.95849 1.34588 0.89681 1.25948 0.98474 0.97571 0.92424 1.69842 1.18259 1.31708 1.21416 0.86155 0.79651 0.80975 0.79425 1.18167 1.19508 1.19788 1.20752 1.00121 0.89985 1.03066 1.20867 0.91783 0.99327 1.05827 1.17765 0.89976 0.82657 1.15407 1.86304 1.35130 1.12660 1.90237 1.23060 0.81904 0.91058 0.71873 1.93059 1.76375 1.96788 1.52662 1.93071 1.76778 1.96756 1.52143 0.92407 0.92332 0.92063 0.90512 0.85133 0.87395 0.81846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 9.60 36.01 0.35 -1.47 15 2 C -0.10 -2.27 5.89 -104.46 -0.62 -2.89 15 3 C -0.01 -0.27 7.24 -38.67 -0.28 -0.55 15 4 F -0.15 -3.88 15.92 2.25 0.04 -3.84 15 5 C 0.08 2.06 5.58 -106.73 -0.60 1.46 15 6 C -0.45 -11.96 8.77 -37.87 -0.33 -12.29 15 7 H 0.09 2.24 7.74 -52.49 -0.41 1.83 15 8 C 0.07 1.85 5.13 -17.34 -0.09 1.76 15 9 N -0.79 -19.96 10.96 55.54 0.61 -19.35 15 10 Si 0.91 18.43 29.60 -169.99 -5.03 13.40 15 11 H -0.26 -5.20 7.11 56.52 0.40 -4.79 15 12 H -0.27 -5.31 7.11 56.52 0.40 -4.90 15 13 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 14 C -0.12 -3.10 8.63 -39.29 -0.34 -3.44 15 15 C -0.16 -3.78 8.17 -39.83 -0.33 -4.11 15 16 C -0.02 -0.36 6.48 -38.81 -0.25 -0.62 15 17 O -0.32 -6.19 9.45 -18.74 -0.18 -6.37 15 18 C 0.41 6.27 5.98 101.05 0.60 6.88 15 19 F -0.21 -3.48 15.56 2.25 0.04 -3.45 15 20 F -0.21 -3.55 15.56 2.25 0.04 -3.51 15 21 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.06 1.08 7.64 -51.93 -0.40 0.68 15 23 H 0.06 1.07 7.52 -51.93 -0.39 0.68 15 24 H 0.28 6.47 8.30 -40.82 -0.34 6.13 15 25 H 0.13 3.43 6.16 -52.49 -0.32 3.11 15 26 H 0.11 2.40 5.05 -52.49 -0.26 2.13 15 27 H 0.17 1.50 8.14 -51.92 -0.42 1.08 15 LS Contribution 248.54 15.07 3.75 3.75 Total: -1.00 -28.73 248.54 -4.39 -33.11 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -1.76 Total: 1.53 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -1.88 Total: -15.27 kcal Atomic # 7 Polarization: -19.96 SS G_CDS: 0.61 Total: -19.35 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.18 Total: -6.37 kcal Atomic # 9 Polarization: -10.91 SS G_CDS: 0.11 Total: -10.80 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.73 -4.39 -33.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575660829.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.214 kcal (2) G-P(sol) polarization free energy of solvation -28.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds