Wall clock time and date at job start Mon Mar 30 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37748 * 119.98029 * 2 1 4 4 F 1.35101 * 120.19173 * 359.96884 * 3 2 1 5 5 C 1.41111 * 119.62289 * 180.26855 * 3 2 1 6 6 C 1.41139 * 120.20252 * 179.69848 * 5 3 2 7 7 H 1.07994 * 119.99442 * 24.71918 * 6 5 3 8 8 C 1.39871 * 119.99877 * 204.72257 * 6 5 3 9 9 N 1.30903 * 120.00455 * 17.86036 * 8 6 5 10 10 Si 1.86808 * 119.99720 * 197.86021 * 8 6 5 11 11 H 1.48502 * 109.46702 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.46971 * 120.00104 * 10 8 6 13 13 H 1.48495 * 109.46994 * 240.00055 * 10 8 6 14 14 C 1.40825 * 119.60293 * 359.72375 * 5 3 2 15 15 C 1.36344 * 119.95446 * 359.97438 * 14 5 3 16 16 C 1.39148 * 119.98422 * 179.73176 * 2 1 3 17 17 O 1.35678 * 119.79785 * 0.03208 * 16 2 1 18 18 C 1.42895 * 117.00319 * 179.71879 * 17 16 2 19 19 F 1.39904 * 109.47161 * 59.99870 * 18 17 16 20 20 F 1.39900 * 109.46943 * 299.99797 * 18 17 16 21 21 H 1.09000 * 109.47163 * 270.26126 * 1 2 3 22 22 H 1.08997 * 109.47160 * 30.26151 * 1 2 3 23 23 H 1.09001 * 109.47314 * 150.26113 * 1 2 3 24 24 H 0.97005 * 120.00320 * 179.97438 * 9 8 6 25 25 H 1.07992 * 120.02775 * 179.97438 * 14 5 3 26 26 H 1.08000 * 119.81343 * 179.97438 * 15 14 5 27 27 H 1.09007 * 109.47407 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1932 0.0000 4 9 1.5233 2.3652 -0.0006 5 6 3.6064 1.1844 -0.0057 6 6 4.3240 2.3997 -0.0122 7 1 3.8685 3.2977 0.3781 8 6 5.6249 2.4410 -0.5243 9 7 6.0532 1.4789 -1.3018 10 14 6.7513 3.8692 -0.0986 11 1 6.0331 4.8182 0.7896 12 1 7.9592 3.3568 0.5968 13 1 7.1566 4.5683 -1.3445 14 6 4.2944 -0.0444 -0.0055 15 6 3.5963 -1.2155 0.0008 16 6 2.2024 -1.2052 0.0056 17 8 1.5196 -2.3776 0.0105 18 6 2.2932 -3.5791 0.0099 19 9 3.1045 -3.6119 1.1492 20 9 3.0958 -3.6163 -1.1354 21 1 -0.3633 0.0047 1.0276 22 1 -0.3633 0.8876 -0.5179 23 1 -0.3634 -0.8923 -0.5098 24 1 6.9554 1.5077 -1.6572 25 1 5.3742 -0.0591 -0.0103 26 1 4.1263 -2.1565 0.0005 27 1 1.6259 -4.4410 0.0145 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575660829.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:53 Heat of formation + Delta-G solvation = -199.893193 kcal Electronic energy + Delta-G solvation = -17910.242004 eV Core-core repulsion = 14410.078436 eV Total energy + Delta-G solvation = -3500.163568 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.12189 -49.29477 -48.13731 -40.45929 -38.07480 -35.61441 -33.19748 -31.27450 -27.79752 -27.67658 -25.97528 -22.87277 -22.56824 -19.79696 -19.08222 -18.93247 -18.69598 -17.56386 -16.86793 -16.82810 -16.24969 -15.70268 -15.42632 -15.24147 -14.71225 -14.48550 -14.37452 -14.27866 -14.09713 -13.68876 -13.58339 -13.34919 -13.05792 -12.79480 -12.66630 -12.30280 -11.99804 -11.68150 -11.57882 -11.04605 -9.35864 -9.19303 -8.75698 -6.40758 0.63952 0.72760 1.36638 1.43931 1.53021 1.96734 2.17242 2.51901 2.74552 3.37026 3.71345 3.88239 3.95215 4.11014 4.17940 4.48209 4.68379 4.82288 4.85558 5.09950 5.14699 5.24367 5.49314 5.73005 5.82023 5.94717 6.20657 6.46695 6.70799 6.79650 8.20934 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.026519 B = 0.008126 C = 0.006580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.587649 B = 3445.058148 C = 4254.387497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.106 4.106 3 C -0.036 4.036 4 F -0.157 7.157 5 C 0.046 3.954 6 C -0.486 4.486 7 H 0.075 0.925 8 C 0.037 3.963 9 N -0.817 5.817 10 Si 0.989 3.011 11 H -0.260 1.260 12 H -0.258 1.258 13 H -0.262 1.262 14 C -0.139 4.139 15 C -0.162 4.162 16 C -0.005 4.005 17 O -0.324 6.324 18 C 0.403 3.597 19 F -0.217 7.217 20 F -0.219 7.219 21 H 0.075 0.925 22 H 0.060 0.940 23 H 0.081 0.919 24 H 0.294 0.706 25 H 0.119 0.881 26 H 0.121 0.879 27 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 -7.587 1.817 8.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.056 4.056 4 F -0.137 7.137 5 C 0.043 3.957 6 C -0.515 4.515 7 H 0.093 0.907 8 C -0.179 4.179 9 N -0.442 5.442 10 Si 0.808 3.192 11 H -0.184 1.184 12 H -0.182 1.182 13 H -0.187 1.187 14 C -0.159 4.159 15 C -0.181 4.181 16 C -0.047 4.047 17 O -0.242 6.242 18 C 0.314 3.686 19 F -0.199 7.199 20 F -0.201 7.201 21 H 0.094 0.906 22 H 0.079 0.921 23 H 0.099 0.901 24 H 0.105 0.895 25 H 0.137 0.863 26 H 0.139 0.861 27 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -4.187 -7.648 1.663 8.876 hybrid contribution 0.975 0.758 -0.034 1.236 sum -3.212 -6.890 1.629 7.774 Atomic orbital electron populations 1.20472 0.88764 1.02789 1.02661 1.18960 0.97379 0.89004 1.05375 1.17460 0.89833 0.80154 1.18192 1.91241 1.80302 1.46824 1.95295 1.17985 0.89961 0.95301 0.92471 1.19669 0.99484 0.95656 1.36667 0.90656 1.26797 0.99147 1.00426 0.91529 1.69865 1.19163 1.33396 1.21762 0.85061 0.77448 0.77286 0.79371 1.18382 1.18230 1.18689 1.20702 0.99750 0.90647 1.04764 1.21048 0.92659 0.99106 1.05252 1.17824 0.89590 0.84236 1.13100 1.86309 1.35635 1.12413 1.89882 1.24265 0.82490 0.91139 0.70752 1.93040 1.76924 1.96695 1.53246 1.93046 1.77397 1.96675 1.52936 0.90614 0.92064 0.90059 0.89485 0.86325 0.86092 0.74731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.24 9.60 71.24 0.68 -2.56 15 2 C -0.11 -4.86 5.89 -19.76 -0.12 -4.97 15 3 C -0.04 -1.88 7.24 22.86 0.17 -1.72 15 4 F -0.16 -8.07 15.92 44.97 0.72 -7.36 15 5 C 0.05 2.56 5.58 -21.23 -0.12 2.44 15 6 C -0.49 -26.91 8.77 23.38 0.21 -26.70 15 7 H 0.08 4.15 7.74 -2.91 -0.02 4.12 15 8 C 0.04 1.87 5.13 85.23 0.44 2.31 15 9 N -0.82 -42.20 10.96 21.82 0.24 -41.96 15 10 Si 0.99 38.06 29.60 68.60 2.03 40.09 15 11 H -0.26 -9.99 7.11 99.48 0.71 -9.28 15 12 H -0.26 -9.36 7.11 99.48 0.71 -8.66 15 13 H -0.26 -9.60 7.11 99.48 0.71 -8.89 15 14 C -0.14 -7.41 8.63 22.46 0.19 -7.21 15 15 C -0.16 -7.69 8.17 22.11 0.18 -7.50 15 16 C 0.00 -0.20 6.48 22.77 0.15 -0.06 15 17 O -0.32 -11.38 9.45 -89.96 -0.85 -12.23 15 18 C 0.40 10.85 5.98 113.37 0.68 11.53 15 19 F -0.22 -6.76 15.56 44.97 0.70 -6.06 15 20 F -0.22 -7.02 15.56 44.97 0.70 -6.32 15 21 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 22 H 0.06 2.15 7.64 -2.39 -0.02 2.13 15 23 H 0.08 2.57 7.52 -2.39 -0.02 2.56 15 24 H 0.29 13.52 8.30 -92.70 -0.77 12.75 15 25 H 0.12 6.48 6.16 -2.91 -0.02 6.46 15 26 H 0.12 5.31 5.05 -2.91 -0.01 5.29 15 27 H 0.24 2.97 8.14 -2.38 -0.02 2.95 15 Total: -1.00 -63.63 248.54 7.21 -56.41 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.22 Total: 11.87 kcal Atomic # 6 Polarization: -36.91 SS G_CDS: 2.46 Total: -34.45 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.24 Total: -41.96 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -0.85 Total: -12.23 kcal Atomic # 9 Polarization: -21.85 SS G_CDS: 2.12 Total: -19.73 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Total: -63.63 7.21 -56.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575660829.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.480 kcal (2) G-P(sol) polarization free energy of solvation -63.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds