Wall clock time and date at job start Mon Mar 30 2020 06:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37562 * 119.81444 * 2 1 4 4 C 1.40759 * 119.87314 * 179.97438 * 3 2 1 5 5 C 1.41319 * 120.24199 * 179.97438 * 4 3 2 6 6 H 1.08000 * 120.00035 * 208.68214 * 5 4 3 7 7 C 1.39926 * 119.99530 * 28.68052 * 5 4 3 8 8 N 1.30845 * 119.99878 * 197.75583 * 7 5 4 9 9 Si 1.86800 * 120.00189 * 17.75709 * 7 5 4 10 10 H 1.48502 * 109.47266 * 269.99971 * 9 7 5 11 11 H 1.48504 * 109.47148 * 29.99850 * 9 7 5 12 12 H 1.48500 * 109.47173 * 149.99750 * 9 7 5 13 13 C 1.40878 * 119.52579 * 0.27708 * 4 3 2 14 14 F 1.35098 * 120.18326 * 179.70429 * 13 4 3 15 15 C 1.38421 * 119.62700 * 359.41960 * 13 4 3 16 16 O 1.35964 * 119.94084 * 180.29525 * 15 13 4 17 17 C 1.42900 * 117.00289 * 180.30443 * 16 15 13 18 18 F 1.39904 * 109.46994 * 300.00636 * 17 16 15 19 19 F 1.39901 * 109.46988 * 60.00310 * 17 16 15 20 20 C 1.38650 * 119.81302 * 179.97438 * 2 1 3 21 21 H 1.09000 * 109.46543 * 90.00698 * 1 2 3 22 22 H 1.08997 * 109.46985 * 210.00276 * 1 2 3 23 23 H 1.08991 * 109.47319 * 330.00435 * 1 2 3 24 24 H 1.07998 * 120.06786 * 359.97438 * 3 2 1 25 25 H 0.96999 * 120.00067 * 355.44560 * 8 7 5 26 26 H 1.08997 * 109.47357 * 180.02562 * 17 16 15 27 27 H 1.08000 * 119.76090 * 0.02782 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1910 1.1935 0.0000 4 6 3.5986 1.1950 0.0005 5 6 4.3091 2.4166 0.0000 6 1 5.2901 2.4705 -0.4485 7 6 3.7416 3.5562 0.5806 8 7 4.2121 4.7420 0.2898 9 14 2.3122 3.3847 1.7709 10 1 1.0328 3.4348 1.0186 11 1 2.4158 2.0870 2.4853 12 1 2.3515 4.4961 2.7551 13 6 4.2941 -0.0301 -0.0048 14 9 5.6450 -0.0442 -0.0104 15 6 3.5857 -1.2192 0.0016 16 8 4.2505 -2.4053 0.0025 17 6 3.4571 -3.5938 0.0025 18 9 2.6488 -3.6149 1.1443 19 9 2.6505 -3.6160 -1.1403 20 6 2.1964 -1.2030 0.0005 21 1 -0.3632 -0.0001 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8899 0.5137 24 1 1.6491 2.1277 -0.0004 25 1 4.9955 4.8276 -0.2758 26 1 4.1100 -4.4665 0.0038 27 1 1.6495 -2.1343 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575660851.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:40 Heat of formation + Delta-G solvation = -188.084904 kcal Electronic energy + Delta-G solvation = -18030.243081 eV Core-core repulsion = 14530.591559 eV Total energy + Delta-G solvation = -3499.651522 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.02202 -47.38831 -47.02174 -38.88637 -36.96761 -33.96321 -31.42762 -29.91518 -26.31237 -25.43469 -24.99482 -21.72881 -20.22607 -18.78396 -17.83915 -17.59238 -17.46723 -16.21757 -15.61617 -14.71561 -14.64877 -14.16027 -13.88573 -13.48785 -13.40627 -13.12810 -13.06554 -12.93507 -12.78246 -12.46088 -12.42525 -11.94385 -11.35151 -10.96746 -10.88245 -10.65718 -10.07778 -9.90054 -9.62027 -9.14900 -7.88521 -7.43879 -7.32153 -4.74236 2.28423 2.35067 3.04571 3.10611 3.27155 3.47271 3.76224 3.90686 4.25652 4.58872 4.90962 5.10343 5.46068 5.57182 5.78208 6.12166 6.13227 6.17968 6.34325 6.42244 6.82518 7.01944 7.23275 7.37343 7.40961 7.53963 7.81132 8.18911 8.30980 8.52587 9.83539 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.029912 B = 0.008860 C = 0.007472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.867227 B = 3159.659530 C = 3746.637107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.022 4.022 3 C -0.244 4.244 4 C 0.095 3.905 5 C -0.495 4.495 6 H 0.084 0.916 7 C 0.044 3.956 8 N -0.801 5.801 9 Si 1.072 2.928 10 H -0.272 1.272 11 H -0.260 1.260 12 H -0.286 1.286 13 C -0.034 4.034 14 F -0.151 7.151 15 C 0.108 3.892 16 O -0.324 6.324 17 C 0.413 3.587 18 F -0.202 7.202 19 F -0.203 7.203 20 C -0.290 4.290 21 H 0.064 0.936 22 H 0.058 0.942 23 H 0.061 0.939 24 H 0.118 0.882 25 H 0.290 0.710 26 H 0.171 0.829 27 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.356 -10.658 0.620 11.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.023 4.023 3 C -0.263 4.263 4 C 0.091 3.909 5 C -0.523 4.523 6 H 0.102 0.898 7 C -0.177 4.177 8 N -0.422 5.422 9 Si 0.898 3.102 10 H -0.199 1.199 11 H -0.184 1.184 12 H -0.213 1.213 13 C -0.055 4.055 14 F -0.130 7.130 15 C 0.065 3.935 16 O -0.242 6.242 17 C 0.322 3.678 18 F -0.184 7.184 19 F -0.185 7.185 20 C -0.309 4.309 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.135 0.865 25 H 0.101 0.899 26 H 0.187 0.813 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.122 -9.712 1.482 11.080 hybrid contribution 1.228 -0.951 -1.146 1.931 sum -3.894 -10.664 0.336 11.358 Atomic orbital electron populations 1.20736 0.92463 1.01786 1.01604 1.19226 0.94636 0.92424 0.95993 1.20838 0.93141 0.96823 1.15538 1.17516 0.91936 0.91088 0.90342 1.20625 1.04920 0.93723 1.33012 0.89791 1.27380 1.02244 0.90929 0.97140 1.70539 1.19184 1.24795 1.27730 0.83608 0.73906 0.77068 0.75645 1.19901 1.18416 1.21344 1.17000 0.76325 0.90933 1.21252 1.91298 1.29147 1.97169 1.95370 1.18626 0.91408 0.82158 1.01325 1.86575 1.35574 1.12923 1.89121 1.23161 0.81732 0.91036 0.71852 1.93070 1.76326 1.96779 1.52256 1.93068 1.76417 1.96771 1.52202 1.20414 0.90693 0.98363 1.21469 0.91702 0.92265 0.92025 0.86477 0.89882 0.81284 0.86559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 10.00 36.01 0.36 -1.47 15 2 C -0.02 -0.48 5.87 -104.71 -0.61 -1.09 15 3 C -0.24 -5.82 6.91 -38.88 -0.27 -6.08 15 4 C 0.10 2.49 5.14 -106.77 -0.55 1.94 15 5 C -0.50 -13.48 9.14 -37.78 -0.35 -13.83 15 6 H 0.08 2.40 7.95 -52.49 -0.42 1.98 15 7 C 0.04 1.15 5.42 -17.34 -0.09 1.05 15 8 N -0.80 -21.09 13.66 55.55 0.76 -20.33 15 9 Si 1.07 23.74 24.90 -169.99 -4.23 19.50 15 10 H -0.27 -5.58 6.43 56.52 0.36 -5.21 15 11 H -0.26 -5.77 7.03 56.52 0.40 -5.38 15 12 H -0.29 -6.11 7.11 56.52 0.40 -5.71 15 13 C -0.03 -0.89 7.31 -38.52 -0.28 -1.17 15 14 F -0.15 -3.94 16.60 2.25 0.04 -3.90 15 15 C 0.11 2.49 6.48 -39.26 -0.25 2.24 15 16 O -0.32 -6.43 10.29 -19.63 -0.20 -6.64 15 17 C 0.41 6.04 5.98 101.05 0.60 6.64 15 18 F -0.20 -3.21 15.57 2.25 0.04 -3.17 15 19 F -0.20 -3.20 15.57 2.25 0.04 -3.17 15 20 C -0.29 -6.25 7.92 -39.17 -0.31 -6.56 15 21 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.06 0.88 8.08 -51.93 -0.42 0.47 15 23 H 0.06 0.97 8.08 -51.93 -0.42 0.55 15 24 H 0.12 2.70 4.38 -52.49 -0.23 2.47 15 25 H 0.29 7.42 8.73 -40.82 -0.36 7.07 15 26 H 0.17 1.48 8.14 -51.93 -0.42 1.06 15 27 H 0.12 2.28 5.06 -52.49 -0.27 2.02 15 LS Contribution 245.87 15.07 3.71 3.71 Total: -1.00 -29.06 245.87 -3.41 -32.47 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -1.79 Total: -0.14 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -1.75 Total: -18.33 kcal Atomic # 7 Polarization: -21.09 SS G_CDS: 0.76 Total: -20.33 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.20 Total: -6.64 kcal Atomic # 9 Polarization: -10.35 SS G_CDS: 0.11 Total: -10.24 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -4.23 Total: 19.50 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.06 -3.41 -32.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575660851.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.615 kcal (2) G-P(sol) polarization free energy of solvation -29.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds