Wall clock time and date at job start Mon Mar 30 2020 06:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37562 * 119.81444 * 2 1 4 4 C 1.40759 * 119.87314 * 179.97438 * 3 2 1 5 5 C 1.41319 * 120.24199 * 179.97438 * 4 3 2 6 6 H 1.08000 * 120.00035 * 208.68214 * 5 4 3 7 7 C 1.39926 * 119.99530 * 28.68052 * 5 4 3 8 8 N 1.30845 * 119.99878 * 197.75583 * 7 5 4 9 9 Si 1.86800 * 120.00189 * 17.75709 * 7 5 4 10 10 H 1.48502 * 109.47266 * 269.99971 * 9 7 5 11 11 H 1.48504 * 109.47148 * 29.99850 * 9 7 5 12 12 H 1.48500 * 109.47173 * 149.99750 * 9 7 5 13 13 C 1.40878 * 119.52579 * 0.27708 * 4 3 2 14 14 F 1.35098 * 120.18326 * 179.70429 * 13 4 3 15 15 C 1.38421 * 119.62700 * 359.41960 * 13 4 3 16 16 O 1.35964 * 119.94084 * 180.29525 * 15 13 4 17 17 C 1.42900 * 117.00289 * 180.30443 * 16 15 13 18 18 F 1.39904 * 109.46994 * 300.00636 * 17 16 15 19 19 F 1.39901 * 109.46988 * 60.00310 * 17 16 15 20 20 C 1.38650 * 119.81302 * 179.97438 * 2 1 3 21 21 H 1.09000 * 109.46543 * 90.00698 * 1 2 3 22 22 H 1.08997 * 109.46985 * 210.00276 * 1 2 3 23 23 H 1.08991 * 109.47319 * 330.00435 * 1 2 3 24 24 H 1.07998 * 120.06786 * 359.97438 * 3 2 1 25 25 H 0.96999 * 120.00067 * 355.44560 * 8 7 5 26 26 H 1.08997 * 109.47357 * 180.02562 * 17 16 15 27 27 H 1.08000 * 119.76090 * 0.02782 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1910 1.1935 0.0000 4 6 3.5986 1.1950 0.0005 5 6 4.3091 2.4166 0.0000 6 1 5.2901 2.4705 -0.4485 7 6 3.7416 3.5562 0.5806 8 7 4.2121 4.7420 0.2898 9 14 2.3122 3.3847 1.7709 10 1 1.0328 3.4348 1.0186 11 1 2.4158 2.0870 2.4853 12 1 2.3515 4.4961 2.7551 13 6 4.2941 -0.0301 -0.0048 14 9 5.6450 -0.0442 -0.0104 15 6 3.5857 -1.2192 0.0016 16 8 4.2505 -2.4053 0.0025 17 6 3.4571 -3.5938 0.0025 18 9 2.6488 -3.6149 1.1443 19 9 2.6505 -3.6160 -1.1403 20 6 2.1964 -1.2030 0.0005 21 1 -0.3632 -0.0001 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8899 0.5137 24 1 1.6491 2.1277 -0.0004 25 1 4.9955 4.8276 -0.2758 26 1 4.1100 -4.4665 0.0038 27 1 1.6495 -2.1343 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575660851.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:40 Heat of formation + Delta-G solvation = -206.654042 kcal Electronic energy + Delta-G solvation = -18031.048299 eV Core-core repulsion = 14530.591559 eV Total energy + Delta-G solvation = -3500.456741 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.24398 -49.37816 -48.24137 -40.57153 -38.66298 -35.85230 -33.16050 -31.68369 -27.72878 -27.18093 -26.62542 -23.43113 -21.97985 -20.53485 -19.31945 -19.09434 -18.84634 -18.01277 -17.32336 -16.51220 -16.26317 -15.91935 -15.36431 -15.24241 -14.84102 -14.73067 -14.59069 -14.54869 -14.18152 -14.10937 -13.92519 -13.38463 -12.94226 -12.66135 -12.53154 -12.37843 -11.80460 -11.69906 -11.49676 -10.94559 -9.79380 -9.40665 -9.12404 -6.78688 0.44703 0.50549 1.33398 1.51559 1.70126 1.75788 2.11781 2.41154 2.57314 3.13075 3.56109 3.64744 3.75035 3.99834 4.22898 4.38373 4.52383 4.78319 4.89488 4.98251 5.10906 5.19700 5.31772 5.43582 5.63924 5.72264 5.97229 6.15005 6.43423 6.58313 7.83162 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.029912 B = 0.008860 C = 0.007472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.867227 B = 3159.659530 C = 3746.637107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.020 4.020 3 C -0.253 4.253 4 C 0.080 3.920 5 C -0.535 4.535 6 H 0.046 0.954 7 C 0.016 3.984 8 N -0.824 5.824 9 Si 1.100 2.900 10 H -0.238 1.238 11 H -0.264 1.264 12 H -0.275 1.275 13 C -0.078 4.078 14 F -0.164 7.164 15 C 0.113 3.887 16 O -0.339 6.339 17 C 0.407 3.593 18 F -0.208 7.208 19 F -0.208 7.208 20 C -0.278 4.278 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.075 0.925 24 H 0.126 0.874 25 H 0.281 0.719 26 H 0.237 0.763 27 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.197 -12.949 1.104 14.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.020 4.020 3 C -0.272 4.272 4 C 0.076 3.924 5 C -0.563 4.563 6 H 0.064 0.936 7 C -0.199 4.199 8 N -0.445 5.445 9 Si 0.919 3.081 10 H -0.163 1.163 11 H -0.188 1.188 12 H -0.201 1.201 13 C -0.098 4.098 14 F -0.144 7.144 15 C 0.069 3.931 16 O -0.257 6.257 17 C 0.318 3.682 18 F -0.189 7.189 19 F -0.190 7.190 20 C -0.297 4.297 21 H 0.104 0.896 22 H 0.101 0.899 23 H 0.094 0.906 24 H 0.144 0.856 25 H 0.091 0.909 26 H 0.253 0.747 27 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.962 -12.020 1.942 14.548 hybrid contribution 2.098 -0.531 -1.347 2.549 sum -5.864 -12.551 0.596 13.866 Atomic orbital electron populations 1.20868 0.88395 1.03778 1.03560 1.19832 0.97601 0.91266 0.93306 1.21033 0.92053 0.98407 1.15682 1.17753 0.93388 0.90798 0.90442 1.20536 1.04225 0.95649 1.35917 0.93561 1.28510 1.03906 0.90083 0.97422 1.70604 1.19768 1.25181 1.28992 0.83325 0.73091 0.77117 0.74583 1.16295 1.18825 1.20126 1.17419 0.76195 0.92452 1.23780 1.91244 1.30119 1.97304 1.95708 1.18710 0.91925 0.82849 0.99637 1.86573 1.37180 1.13197 1.88747 1.24252 0.82304 0.90513 0.71102 1.93058 1.76639 1.96629 1.52617 1.93056 1.76733 1.96621 1.52576 1.20870 0.90135 0.99683 1.19059 0.89567 0.89869 0.90603 0.85636 0.90855 0.74744 0.83959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.10 10.00 71.24 0.71 -2.39 15 2 C -0.02 -0.78 5.87 -19.92 -0.12 -0.89 15 3 C -0.25 -11.67 6.91 22.73 0.16 -11.52 15 4 C 0.08 4.26 5.14 -21.26 -0.11 4.15 15 5 C -0.53 -30.76 9.14 23.44 0.21 -30.54 15 6 H 0.05 2.89 7.95 -2.91 -0.02 2.86 15 7 C 0.02 0.87 5.42 85.25 0.46 1.33 15 8 N -0.82 -45.08 13.66 21.82 0.30 -44.78 15 9 Si 1.10 46.97 24.90 68.60 1.71 48.67 15 10 H -0.24 -8.83 6.43 99.48 0.64 -8.19 15 11 H -0.26 -11.31 7.03 99.48 0.70 -10.61 15 12 H -0.27 -11.14 7.11 99.48 0.71 -10.43 15 13 C -0.08 -4.09 7.31 22.96 0.17 -3.93 15 14 F -0.16 -8.99 16.60 44.97 0.75 -8.25 15 15 C 0.11 5.06 6.48 22.48 0.15 5.20 15 16 O -0.34 -12.73 10.29 -93.14 -0.96 -13.69 15 17 C 0.41 10.28 5.98 113.37 0.68 10.95 15 18 F -0.21 -5.74 15.57 44.97 0.70 -5.04 15 19 F -0.21 -5.76 15.57 44.97 0.70 -5.06 15 20 C -0.28 -11.11 7.92 22.54 0.18 -10.94 15 21 H 0.09 2.14 8.14 -2.39 -0.02 2.12 15 22 H 0.08 1.99 8.08 -2.39 -0.02 1.97 15 23 H 0.08 1.97 8.08 -2.39 -0.02 1.95 15 24 H 0.13 5.51 4.38 -2.91 -0.01 5.50 15 25 H 0.28 15.34 8.73 -92.71 -0.81 14.53 15 26 H 0.24 2.82 8.14 -2.39 -0.02 2.80 15 27 H 0.14 4.93 5.06 -2.91 -0.01 4.91 15 Total: -1.00 -66.08 245.87 6.79 -59.29 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 1.11 Total: 7.41 kcal Atomic # 6 Polarization: -41.05 SS G_CDS: 2.49 Total: -38.56 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.30 Total: -44.78 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.96 Total: -13.69 kcal Atomic # 9 Polarization: -20.49 SS G_CDS: 2.15 Total: -18.35 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.71 Total: 48.67 kcal Total: -66.08 6.79 -59.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575660851.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.364 kcal (2) G-P(sol) polarization free energy of solvation -66.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds