Wall clock time and date at job start Mon Mar 30 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37568 * 120.06456 * 2 1 4 4 C 1.38646 * 120.36651 * 180.02562 * 3 2 1 5 5 C 1.38932 * 120.48754 * 0.02562 * 4 3 2 6 6 O 1.35967 * 119.94201 * 179.97438 * 5 4 3 7 7 C 1.42897 * 117.00312 * 0.02562 * 6 5 4 8 8 F 1.39902 * 109.47271 * 59.99754 * 7 6 5 9 9 F 1.39898 * 109.47022 * 299.99853 * 7 6 5 10 10 C 1.38415 * 120.11615 * 0.25192 * 5 4 3 11 11 F 1.35105 * 120.18553 * 179.70002 * 10 5 4 12 12 C 1.40770 * 120.06068 * 180.02562 * 2 1 3 13 13 C 1.41313 * 120.23881 * 359.97438 * 12 2 1 14 14 H 1.08004 * 119.99640 * 36.67341 * 13 12 2 15 15 C 1.39926 * 120.00069 * 216.67501 * 13 12 2 16 16 N 1.30846 * 119.99866 * 208.01717 * 15 13 12 17 17 Si 1.86793 * 119.99814 * 28.01276 * 15 13 12 18 18 H 1.48505 * 109.47060 * 95.58619 * 17 15 13 19 19 H 1.48498 * 109.47198 * 215.58464 * 17 15 13 20 20 H 1.48498 * 109.47285 * 335.58614 * 17 15 13 21 21 H 1.08998 * 109.47877 * 90.00041 * 1 2 3 22 22 H 1.09005 * 109.47329 * 210.00365 * 1 2 3 23 23 H 1.09001 * 109.47327 * 329.99336 * 1 2 3 24 24 H 1.08004 * 119.81700 * 0.04713 * 3 2 1 25 25 H 1.08001 * 119.75773 * 180.02562 * 4 3 2 26 26 H 1.09001 * 109.47428 * 179.97438 * 7 6 5 27 27 H 0.96995 * 119.99874 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1906 0.0000 4 6 3.5826 1.1979 -0.0005 5 6 4.2938 0.0044 -0.0016 6 8 5.6533 0.0245 -0.0027 7 6 6.2832 1.3072 -0.0020 8 9 5.8977 2.0155 1.1412 9 9 5.8959 2.0174 -1.1434 10 6 3.6208 -1.2051 -0.0074 11 9 4.3109 -2.3665 -0.0146 12 6 2.2121 -1.2184 -0.0005 13 6 1.5120 -2.4458 -0.0005 14 1 0.5926 -2.5430 -0.5589 15 6 2.0098 -3.5353 0.7228 16 7 1.7407 -4.7557 0.3353 17 14 3.0586 -3.2472 2.2414 18 1 2.2016 -3.3039 3.4529 19 1 4.1057 -4.2968 2.3262 20 1 3.7023 -1.9119 2.1525 21 1 -0.3635 0.0000 -1.0276 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3634 0.8899 0.5139 24 1 1.6542 2.1248 0.0008 25 1 4.1137 2.1383 -0.0001 26 1 7.3658 1.1803 -0.0025 27 1 2.0855 -5.5109 0.8370 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575660991.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:29 Heat of formation + Delta-G solvation = -175.241976 kcal Electronic energy + Delta-G solvation = -18252.027701 eV Core-core repulsion = 14752.933090 eV Total energy + Delta-G solvation = -3499.094611 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.99264 -47.60129 -46.99228 -38.79602 -36.89231 -33.61576 -31.10157 -30.10000 -27.00124 -25.21969 -24.54089 -21.47412 -20.43447 -18.49232 -18.02107 -17.56407 -17.04887 -15.82522 -15.54262 -15.24667 -14.51517 -14.31403 -13.88258 -13.53990 -13.38870 -13.10526 -13.01566 -12.80672 -12.48557 -12.27503 -12.08825 -11.83964 -11.18015 -11.14562 -10.82296 -10.39187 -10.16395 -10.06190 -9.67170 -9.17416 -7.64481 -7.25774 -7.07483 -4.59903 2.35446 2.37622 3.08744 3.16501 3.22186 3.31397 3.79579 4.01392 4.29774 4.62301 4.92627 5.10125 5.49305 5.74541 6.02963 6.11946 6.37189 6.47689 6.55162 6.80732 6.83978 7.01275 7.10675 7.39605 7.49959 7.70003 7.98274 8.20257 8.47343 8.62558 9.90956 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.026584 B = 0.010206 C = 0.008385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.017442 B = 2742.771097 C = 3338.560312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.179 4.179 3 C -0.062 4.062 4 C -0.285 4.285 5 C 0.098 3.902 6 O -0.324 6.324 7 C 0.413 3.587 8 F -0.203 7.203 9 F -0.203 7.203 10 C -0.027 4.027 11 F -0.142 7.142 12 C 0.087 3.913 13 C -0.448 4.448 14 H 0.102 0.898 15 C 0.095 3.905 16 N -0.781 5.781 17 Si 0.912 3.088 18 H -0.286 1.286 19 H -0.276 1.276 20 H -0.243 1.243 21 H 0.048 0.952 22 H 0.068 0.932 23 H 0.044 0.956 24 H 0.105 0.895 25 H 0.114 0.886 26 H 0.170 0.830 27 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.338 8.070 1.118 9.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.180 4.180 3 C -0.081 4.081 4 C -0.304 4.304 5 C 0.055 3.945 6 O -0.243 6.243 7 C 0.322 3.678 8 F -0.185 7.185 9 F -0.185 7.185 10 C -0.048 4.048 11 F -0.122 7.122 12 C 0.084 3.916 13 C -0.474 4.474 14 H 0.120 0.880 15 C -0.129 4.129 16 N -0.402 5.402 17 Si 0.738 3.262 18 H -0.213 1.213 19 H -0.202 1.202 20 H -0.167 1.167 21 H 0.067 0.933 22 H 0.087 0.913 23 H 0.063 0.937 24 H 0.123 0.877 25 H 0.132 0.868 26 H 0.187 0.813 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.438 7.588 1.094 9.399 hybrid contribution 0.587 0.075 0.585 0.833 sum 6.026 7.663 1.679 9.892 Atomic orbital electron populations 1.20416 0.92095 1.01282 1.00435 1.19668 0.95265 0.91654 1.11444 1.20335 0.92729 0.96681 0.98341 1.20552 0.95256 0.94478 1.20135 1.18639 0.79241 0.94404 1.02167 1.86573 1.20366 1.28137 1.89175 1.23155 0.96851 0.75964 0.71829 1.93066 1.93361 1.79884 1.52209 1.93065 1.93314 1.79790 1.52303 1.16970 0.89511 0.77938 1.20364 1.91065 1.79235 1.46896 1.94962 1.17338 0.88137 0.94167 0.92008 1.19252 1.09276 0.91977 1.26883 0.88007 1.26225 0.93715 0.94037 0.98883 1.69770 1.35573 0.99958 1.34924 0.86230 0.79347 0.81550 0.79066 1.21329 1.20176 1.16678 0.93314 0.91329 0.93739 0.87666 0.86772 0.81328 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.64 9.45 36.01 0.34 -1.30 15 2 C -0.18 -4.04 5.94 -103.91 -0.62 -4.66 15 3 C -0.06 -1.31 9.67 -39.68 -0.38 -1.69 15 4 C -0.28 -6.15 8.27 -39.17 -0.32 -6.48 15 5 C 0.10 2.31 6.48 -39.26 -0.25 2.05 15 6 O -0.32 -6.65 10.29 -19.64 -0.20 -6.85 15 7 C 0.41 6.24 5.98 101.05 0.60 6.84 15 8 F -0.20 -3.31 15.58 2.25 0.04 -3.28 15 9 F -0.20 -3.27 15.57 2.25 0.04 -3.24 15 10 C -0.03 -0.70 5.01 -38.52 -0.19 -0.89 15 11 F -0.14 -3.78 12.87 2.25 0.03 -3.76 15 12 C 0.09 2.23 4.82 -106.78 -0.51 1.71 15 13 C -0.45 -11.88 8.17 -37.78 -0.31 -12.19 15 14 H 0.10 2.75 7.52 -52.48 -0.39 2.35 15 15 C 0.09 2.49 4.75 -17.34 -0.08 2.41 15 16 N -0.78 -20.66 13.93 55.55 0.77 -19.89 15 17 Si 0.91 21.82 25.37 -169.99 -4.31 17.51 15 18 H -0.29 -6.55 7.11 56.52 0.40 -6.15 15 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 20 H -0.24 -6.10 5.45 56.52 0.31 -5.79 15 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.07 1.36 6.97 -51.93 -0.36 1.00 15 23 H 0.04 0.73 8.09 -51.93 -0.42 0.31 15 24 H 0.11 1.87 8.06 -52.48 -0.42 1.45 15 25 H 0.11 2.26 5.06 -52.49 -0.27 1.99 15 26 H 0.17 1.56 8.14 -51.93 -0.42 1.14 15 27 H 0.29 6.92 8.30 -40.82 -0.34 6.58 15 LS Contribution 242.06 15.07 3.65 3.65 Total: -1.00 -29.10 242.06 -3.67 -32.77 By element: Atomic # 1 Polarization: -0.78 SS G_CDS: -1.94 Total: -2.72 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -1.73 Total: -14.19 kcal Atomic # 7 Polarization: -20.66 SS G_CDS: 0.77 Total: -19.89 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.20 Total: -6.85 kcal Atomic # 9 Polarization: -10.37 SS G_CDS: 0.10 Total: -10.27 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.31 Total: 17.51 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.10 -3.67 -32.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575660991.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.477 kcal (2) G-P(sol) polarization free energy of solvation -29.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds