Wall clock time and date at job start Mon Mar 30 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37568 * 120.06456 * 2 1 4 4 C 1.38646 * 120.36651 * 180.02562 * 3 2 1 5 5 C 1.38932 * 120.48754 * 0.02562 * 4 3 2 6 6 O 1.35967 * 119.94201 * 179.97438 * 5 4 3 7 7 C 1.42897 * 117.00312 * 0.02562 * 6 5 4 8 8 F 1.39902 * 109.47271 * 59.99754 * 7 6 5 9 9 F 1.39898 * 109.47022 * 299.99853 * 7 6 5 10 10 C 1.38415 * 120.11615 * 0.25192 * 5 4 3 11 11 F 1.35105 * 120.18553 * 179.70002 * 10 5 4 12 12 C 1.40770 * 120.06068 * 180.02562 * 2 1 3 13 13 C 1.41313 * 120.23881 * 359.97438 * 12 2 1 14 14 H 1.08004 * 119.99640 * 36.67341 * 13 12 2 15 15 C 1.39926 * 120.00069 * 216.67501 * 13 12 2 16 16 N 1.30846 * 119.99866 * 208.01717 * 15 13 12 17 17 Si 1.86793 * 119.99814 * 28.01276 * 15 13 12 18 18 H 1.48505 * 109.47060 * 95.58619 * 17 15 13 19 19 H 1.48498 * 109.47198 * 215.58464 * 17 15 13 20 20 H 1.48498 * 109.47285 * 335.58614 * 17 15 13 21 21 H 1.08998 * 109.47877 * 90.00041 * 1 2 3 22 22 H 1.09005 * 109.47329 * 210.00365 * 1 2 3 23 23 H 1.09001 * 109.47327 * 329.99336 * 1 2 3 24 24 H 1.08004 * 119.81700 * 0.04713 * 3 2 1 25 25 H 1.08001 * 119.75773 * 180.02562 * 4 3 2 26 26 H 1.09001 * 109.47428 * 179.97438 * 7 6 5 27 27 H 0.96995 * 119.99874 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1906 0.0000 4 6 3.5826 1.1979 -0.0005 5 6 4.2938 0.0044 -0.0016 6 8 5.6533 0.0245 -0.0027 7 6 6.2832 1.3072 -0.0020 8 9 5.8977 2.0155 1.1412 9 9 5.8959 2.0174 -1.1434 10 6 3.6208 -1.2051 -0.0074 11 9 4.3109 -2.3665 -0.0146 12 6 2.2121 -1.2184 -0.0005 13 6 1.5120 -2.4458 -0.0005 14 1 0.5926 -2.5430 -0.5589 15 6 2.0098 -3.5353 0.7228 16 7 1.7407 -4.7557 0.3353 17 14 3.0586 -3.2472 2.2414 18 1 2.2016 -3.3039 3.4529 19 1 4.1057 -4.2968 2.3262 20 1 3.7023 -1.9119 2.1525 21 1 -0.3635 0.0000 -1.0276 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3634 0.8899 0.5139 24 1 1.6542 2.1248 0.0008 25 1 4.1137 2.1383 -0.0001 26 1 7.3658 1.1803 -0.0025 27 1 2.0855 -5.5109 0.8370 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575660991.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:29 Heat of formation + Delta-G solvation = -193.528767 kcal Electronic energy + Delta-G solvation = -18252.820676 eV Core-core repulsion = 14752.933090 eV Total energy + Delta-G solvation = -3499.887586 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.23858 -49.56547 -48.23709 -40.46041 -38.57806 -35.51655 -32.80860 -31.91602 -28.57285 -26.90598 -26.06547 -23.28065 -22.09531 -20.22622 -19.49295 -18.84903 -18.69913 -17.55986 -17.31287 -17.07685 -16.32580 -15.97940 -15.27302 -15.16940 -14.89620 -14.71130 -14.53395 -14.41051 -14.11937 -14.03040 -13.68804 -13.30580 -12.99875 -12.90592 -12.49269 -12.12003 -11.92904 -11.86108 -11.49289 -11.08801 -9.51605 -9.03631 -8.99152 -6.56844 0.52558 0.56761 1.24839 1.32404 1.38965 1.75133 2.11106 2.42349 2.58397 3.16602 3.57642 3.69291 3.76174 4.12593 4.32036 4.48967 4.66445 4.93473 5.03139 5.05356 5.16874 5.26835 5.37344 5.61892 5.79881 5.91158 6.09737 6.31334 6.59216 6.70663 8.02563 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.026584 B = 0.010206 C = 0.008385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.017442 B = 2742.771097 C = 3338.560312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.184 4.184 3 C -0.060 4.060 4 C -0.272 4.272 5 C 0.091 3.909 6 O -0.342 6.342 7 C 0.407 3.593 8 F -0.209 7.209 9 F -0.208 7.208 10 C -0.062 4.062 11 F -0.156 7.156 12 C 0.069 3.931 13 C -0.478 4.478 14 H 0.082 0.918 15 C 0.068 3.932 16 N -0.817 5.817 17 Si 0.951 3.049 18 H -0.271 1.271 19 H -0.271 1.271 20 H -0.261 1.261 21 H 0.059 0.941 22 H 0.053 0.947 23 H 0.078 0.922 24 H 0.148 0.852 25 H 0.137 0.863 26 H 0.235 0.765 27 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.131 10.628 1.576 12.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.185 4.185 3 C -0.078 4.078 4 C -0.291 4.291 5 C 0.048 3.952 6 O -0.260 6.260 7 C 0.318 3.682 8 F -0.191 7.191 9 F -0.190 7.190 10 C -0.082 4.082 11 F -0.135 7.135 12 C 0.066 3.934 13 C -0.505 4.505 14 H 0.100 0.900 15 C -0.152 4.152 16 N -0.441 5.441 17 Si 0.775 3.225 18 H -0.198 1.198 19 H -0.196 1.196 20 H -0.185 1.185 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.097 0.903 24 H 0.166 0.834 25 H 0.155 0.845 26 H 0.251 0.749 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.231 10.154 1.556 12.015 hybrid contribution 0.431 -0.447 0.379 0.727 sum 6.662 9.708 1.935 11.932 Atomic orbital electron populations 1.20446 0.89863 1.02239 1.01408 1.20150 0.97137 0.91247 1.09983 1.20815 0.92724 0.97780 0.96507 1.20991 0.95857 0.94712 1.17578 1.18772 0.80963 0.94044 1.01456 1.86558 1.18758 1.31755 1.88956 1.24212 0.98917 0.73976 0.71080 1.93051 1.93599 1.79847 1.52617 1.93052 1.93549 1.79733 1.52661 1.17388 0.90095 0.78590 1.22174 1.91014 1.79480 1.47776 1.95226 1.17618 0.88487 0.94975 0.92340 1.19198 1.09392 0.93255 1.28692 0.89967 1.26683 0.94397 0.93912 1.00184 1.69779 1.37642 1.00497 1.36205 0.85659 0.78600 0.80409 0.77787 1.19798 1.19608 1.18524 0.92243 0.92814 0.90309 0.83430 0.84521 0.74940 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.01 9.45 71.24 0.67 -2.34 15 2 C -0.18 -8.00 5.94 -19.40 -0.12 -8.11 15 3 C -0.06 -2.31 9.67 22.21 0.21 -2.10 15 4 C -0.27 -10.91 8.27 22.53 0.19 -10.72 15 5 C 0.09 4.14 6.48 22.48 0.15 4.28 15 6 O -0.34 -13.29 10.29 -93.18 -0.96 -14.25 15 7 C 0.41 10.79 5.98 113.37 0.68 11.47 15 8 F -0.21 -6.07 15.58 44.97 0.70 -5.36 15 9 F -0.21 -5.98 15.57 44.97 0.70 -5.28 15 10 C -0.06 -3.20 5.01 22.96 0.12 -3.09 15 11 F -0.16 -8.43 12.87 44.97 0.58 -7.85 15 12 C 0.07 3.55 4.82 -21.26 -0.10 3.45 15 13 C -0.48 -26.21 8.17 23.44 0.19 -26.02 15 14 H 0.08 4.66 7.52 -2.91 -0.02 4.64 15 15 C 0.07 3.67 4.75 85.25 0.40 4.07 15 16 N -0.82 -44.74 13.93 21.82 0.30 -44.44 15 17 Si 0.95 45.43 25.37 68.60 1.74 47.17 15 18 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 19 H -0.27 -12.49 7.11 99.48 0.71 -11.78 15 20 H -0.26 -13.12 5.45 99.48 0.54 -12.57 15 21 H 0.06 2.02 8.14 -2.39 -0.02 2.00 15 22 H 0.05 2.11 6.97 -2.38 -0.02 2.09 15 23 H 0.08 2.29 8.09 -2.39 -0.02 2.27 15 24 H 0.15 4.42 8.06 -2.91 -0.02 4.40 15 25 H 0.14 4.83 5.06 -2.91 -0.01 4.82 15 26 H 0.23 3.12 8.14 -2.39 -0.02 3.10 15 27 H 0.30 14.63 8.30 -92.71 -0.77 13.87 15 Total: -1.00 -64.18 242.06 6.51 -57.67 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: 1.05 Total: 1.44 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 2.39 Total: -29.10 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.30 Total: -44.44 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.96 Total: -14.25 kcal Atomic # 9 Polarization: -20.47 SS G_CDS: 1.98 Total: -18.49 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.74 Total: 47.17 kcal Total: -64.18 6.51 -57.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575660991.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.861 kcal (2) G-P(sol) polarization free energy of solvation -64.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds