Wall clock time and date at job start Mon Mar 30 2020 06:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37697 * 120.10669 * 2 1 4 4 F 1.35101 * 119.82322 * 359.97438 * 3 2 1 5 5 C 1.39014 * 120.35634 * 179.72564 * 3 2 1 6 6 C 1.38323 * 120.57033 * 0.27570 * 5 3 2 7 7 C 1.38360 * 120.19580 * 359.97438 * 6 5 3 8 8 O 1.35667 * 120.18209 * 179.97438 * 7 6 5 9 9 C 1.42911 * 116.99972 * 0.02562 * 8 7 6 10 10 F 1.39902 * 109.46736 * 299.99605 * 9 8 7 11 11 F 1.39897 * 109.47098 * 59.98973 * 9 8 7 12 12 C 1.40693 * 120.10872 * 180.25117 * 2 1 3 13 13 C 1.41143 * 120.27579 * 359.97438 * 12 2 1 14 14 H 1.07995 * 120.00004 * 39.15396 * 13 12 2 15 15 C 1.39926 * 120.00167 * 219.16299 * 13 12 2 16 16 N 1.30858 * 120.00270 * 20.13807 * 15 13 12 17 17 Si 1.86804 * 119.99753 * 200.14170 * 15 13 12 18 18 H 1.48495 * 109.47341 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.47065 * 119.99768 * 17 15 13 20 20 H 1.48500 * 109.47125 * 239.99722 * 17 15 13 21 21 H 1.08997 * 109.47177 * 89.99932 * 1 2 3 22 22 H 1.09004 * 109.46976 * 210.00371 * 1 2 3 23 23 H 1.09000 * 109.46959 * 329.99727 * 1 2 3 24 24 H 1.08006 * 119.72050 * 180.29442 * 5 3 2 25 25 H 1.07997 * 119.90435 * 179.97438 * 6 5 3 26 26 H 1.08993 * 109.47267 * 179.97438 * 9 8 7 27 27 H 0.97008 * 120.00168 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1912 0.0000 4 9 1.5208 2.3604 -0.0005 5 6 3.5878 1.1973 0.0057 6 6 4.2965 0.0094 0.0058 7 6 3.6261 -1.2009 0.0007 8 8 4.3215 -2.3658 0.0002 9 6 5.7474 -2.2703 0.0058 10 9 6.1727 -1.5781 -1.1332 11 9 6.1642 -1.5839 1.1513 12 6 2.2128 -1.2171 -0.0053 13 6 1.5153 -2.4441 -0.0102 14 1 0.6177 -2.5527 -0.6008 15 6 1.9866 -3.5199 0.7505 16 7 2.8070 -3.3066 1.7474 17 14 1.4448 -5.2605 0.3426 18 1 0.5217 -5.2319 -0.8202 19 1 2.6349 -6.0844 0.0105 20 1 0.7467 -5.8488 1.5138 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5139 24 1 4.1192 2.1376 0.0105 25 1 5.3763 0.0267 0.0099 26 1 6.1786 -3.2712 0.0052 27 1 3.1341 -4.0525 2.2745 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575661039.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:43 Heat of formation + Delta-G solvation = -178.465793 kcal Electronic energy + Delta-G solvation = -18326.655500 eV Core-core repulsion = 14827.421094 eV Total energy + Delta-G solvation = -3499.234407 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.59289 -47.77652 -46.59209 -38.55482 -36.02990 -33.62465 -31.40267 -29.12367 -26.24876 -25.42733 -24.58920 -21.23952 -20.39538 -18.11420 -17.50154 -17.12114 -16.89169 -15.77047 -15.15928 -14.84051 -14.54493 -14.51495 -13.60223 -13.09434 -12.99867 -12.85441 -12.77974 -12.63558 -12.21597 -12.14203 -11.62957 -11.50801 -11.26405 -11.12900 -10.86757 -10.70090 -10.40709 -9.98654 -9.47783 -9.10417 -7.53659 -6.95173 -6.81708 -4.47066 2.53034 2.59761 3.06296 3.07522 3.12697 3.68409 3.92962 4.25926 4.48708 5.04477 5.18339 5.48008 5.56543 5.98933 6.00934 6.27345 6.47347 6.59399 6.69433 6.83262 7.06914 7.09723 7.39124 7.48591 7.60664 7.95157 8.13198 8.32138 8.74726 8.79742 10.16348 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.013453 C = 0.008195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.628128 B = 2080.893154 C = 3415.792385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.199 4.199 3 C 0.095 3.905 4 F -0.164 7.164 5 C -0.235 4.235 6 C -0.150 4.150 7 C 0.043 3.957 8 O -0.276 6.276 9 C 0.400 3.600 10 F -0.215 7.215 11 F -0.208 7.208 12 C 0.133 3.867 13 C -0.462 4.462 14 H 0.086 0.914 15 C 0.088 3.912 16 N -0.768 5.768 17 Si 0.904 3.096 18 H -0.260 1.260 19 H -0.272 1.272 20 H -0.276 1.276 21 H 0.047 0.953 22 H 0.070 0.930 23 H 0.044 0.956 24 H 0.106 0.894 25 H 0.112 0.888 26 H 0.158 0.842 27 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.102 -1.415 -1.820 3.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.201 4.201 3 C 0.076 3.924 4 F -0.143 7.143 5 C -0.256 4.256 6 C -0.169 4.169 7 C -0.001 4.001 8 O -0.192 6.192 9 C 0.308 3.692 10 F -0.197 7.197 11 F -0.190 7.190 12 C 0.130 3.870 13 C -0.490 4.490 14 H 0.104 0.896 15 C -0.133 4.133 16 N -0.392 5.392 17 Si 0.729 3.271 18 H -0.184 1.184 19 H -0.197 1.197 20 H -0.202 1.202 21 H 0.065 0.935 22 H 0.089 0.911 23 H 0.063 0.937 24 H 0.124 0.876 25 H 0.130 0.870 26 H 0.175 0.825 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.134 -1.643 -1.618 3.891 hybrid contribution 0.229 -0.325 0.011 0.398 sum 3.363 -1.968 -1.607 4.215 Atomic orbital electron populations 1.20303 0.91773 1.01463 1.00289 1.19570 0.95553 0.90685 1.14288 1.17336 0.89669 0.80034 1.05380 1.91319 1.80820 1.47520 1.94609 1.20049 0.91574 0.97401 1.16541 1.20777 0.98544 0.91874 1.05679 1.19039 0.91650 0.82391 1.07020 1.86711 1.13704 1.30438 1.88301 1.23222 0.82994 0.91416 0.71524 1.93029 1.90382 1.83209 1.53085 1.93037 1.90486 1.83214 1.52248 1.16539 0.87413 0.92403 0.90675 1.19249 1.10309 0.94481 1.24957 0.89585 1.25725 0.93441 1.00925 0.93205 1.69772 1.23681 1.34103 1.11622 0.86326 0.79431 0.81855 0.79515 1.18413 1.19727 1.20190 0.93466 0.91131 0.93699 0.87575 0.87046 0.82542 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.72 9.28 36.01 0.33 -1.39 15 2 C -0.20 -4.85 5.94 -103.89 -0.62 -5.47 15 3 C 0.09 2.26 7.23 -39.49 -0.29 1.98 15 4 F -0.16 -3.67 16.44 2.25 0.04 -3.63 15 5 C -0.24 -5.46 10.02 -39.26 -0.39 -5.85 15 6 C -0.15 -3.53 8.25 -39.51 -0.33 -3.86 15 7 C 0.04 1.07 5.97 -38.36 -0.23 0.84 15 8 O -0.28 -6.38 7.33 -18.70 -0.14 -6.52 15 9 C 0.40 7.37 5.98 101.05 0.60 7.97 15 10 F -0.21 -4.00 15.58 2.25 0.04 -3.96 15 11 F -0.21 -4.09 15.58 2.25 0.04 -4.06 15 12 C 0.13 3.43 5.36 -106.69 -0.57 2.86 15 13 C -0.46 -11.64 7.59 -37.85 -0.29 -11.93 15 14 H 0.09 2.09 7.51 -52.49 -0.39 1.69 15 15 C 0.09 2.10 4.41 -17.33 -0.08 2.03 15 16 N -0.77 -19.08 11.25 55.55 0.62 -18.45 15 17 Si 0.90 18.02 29.60 -169.99 -5.03 12.99 15 18 H -0.26 -5.17 7.11 56.52 0.40 -4.77 15 19 H -0.27 -5.33 7.11 56.52 0.40 -4.92 15 20 H -0.28 -5.44 7.11 56.52 0.40 -5.04 15 21 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 22 H 0.07 1.48 7.02 -51.93 -0.36 1.12 15 23 H 0.04 0.88 7.63 -51.93 -0.40 0.48 15 24 H 0.11 2.20 8.06 -52.48 -0.42 1.78 15 25 H 0.11 2.46 5.09 -52.49 -0.27 2.19 15 26 H 0.16 2.11 8.14 -51.93 -0.42 1.69 15 27 H 0.28 6.35 8.30 -40.82 -0.34 6.01 15 LS Contribution 247.02 15.07 3.72 3.72 Total: -1.00 -27.61 247.02 -4.39 -31.99 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -1.82 Total: 0.73 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -1.85 Total: -12.81 kcal Atomic # 7 Polarization: -19.08 SS G_CDS: 0.62 Total: -18.45 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.14 Total: -6.52 kcal Atomic # 9 Polarization: -11.76 SS G_CDS: 0.11 Total: -11.65 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -27.61 -4.39 -31.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661039.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.472 kcal (2) G-P(sol) polarization free energy of solvation -27.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds