Wall clock time and date at job start Mon Mar 30 2020 06:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37697 * 120.10669 * 2 1 4 4 F 1.35101 * 119.82322 * 359.97438 * 3 2 1 5 5 C 1.39014 * 120.35634 * 179.72564 * 3 2 1 6 6 C 1.38323 * 120.57033 * 0.27570 * 5 3 2 7 7 C 1.38360 * 120.19580 * 359.97438 * 6 5 3 8 8 O 1.35667 * 120.18209 * 179.97438 * 7 6 5 9 9 C 1.42911 * 116.99972 * 0.02562 * 8 7 6 10 10 F 1.39902 * 109.46736 * 299.99605 * 9 8 7 11 11 F 1.39897 * 109.47098 * 59.98973 * 9 8 7 12 12 C 1.40693 * 120.10872 * 180.25117 * 2 1 3 13 13 C 1.41143 * 120.27579 * 359.97438 * 12 2 1 14 14 H 1.07995 * 120.00004 * 39.15396 * 13 12 2 15 15 C 1.39926 * 120.00167 * 219.16299 * 13 12 2 16 16 N 1.30858 * 120.00270 * 20.13807 * 15 13 12 17 17 Si 1.86804 * 119.99753 * 200.14170 * 15 13 12 18 18 H 1.48495 * 109.47341 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.47065 * 119.99768 * 17 15 13 20 20 H 1.48500 * 109.47125 * 239.99722 * 17 15 13 21 21 H 1.08997 * 109.47177 * 89.99932 * 1 2 3 22 22 H 1.09004 * 109.46976 * 210.00371 * 1 2 3 23 23 H 1.09000 * 109.46959 * 329.99727 * 1 2 3 24 24 H 1.08006 * 119.72050 * 180.29442 * 5 3 2 25 25 H 1.07997 * 119.90435 * 179.97438 * 6 5 3 26 26 H 1.08993 * 109.47267 * 179.97438 * 9 8 7 27 27 H 0.97008 * 120.00168 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1912 0.0000 4 9 1.5208 2.3604 -0.0005 5 6 3.5878 1.1973 0.0057 6 6 4.2965 0.0094 0.0058 7 6 3.6261 -1.2009 0.0007 8 8 4.3215 -2.3658 0.0002 9 6 5.7474 -2.2703 0.0058 10 9 6.1727 -1.5781 -1.1332 11 9 6.1642 -1.5839 1.1513 12 6 2.2128 -1.2171 -0.0053 13 6 1.5153 -2.4441 -0.0102 14 1 0.6177 -2.5527 -0.6008 15 6 1.9866 -3.5199 0.7505 16 7 2.8070 -3.3066 1.7474 17 14 1.4448 -5.2605 0.3426 18 1 0.5217 -5.2319 -0.8202 19 1 2.6349 -6.0844 0.0105 20 1 0.7467 -5.8488 1.5138 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5139 24 1 4.1192 2.1376 0.0105 25 1 5.3763 0.0267 0.0099 26 1 6.1786 -3.2712 0.0052 27 1 3.1341 -4.0525 2.2745 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575661039.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:43 Heat of formation + Delta-G solvation = -193.163525 kcal Electronic energy + Delta-G solvation = -18327.292842 eV Core-core repulsion = 14827.421094 eV Total energy + Delta-G solvation = -3499.871748 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.08404 -49.58584 -48.08768 -40.32296 -37.77682 -35.43271 -33.18929 -30.92597 -28.01433 -27.10823 -26.26081 -23.05511 -22.13620 -19.83047 -19.17941 -18.63326 -18.53702 -17.59365 -16.89452 -16.54754 -16.33958 -16.18990 -15.16183 -14.78279 -14.58826 -14.56696 -14.42562 -14.26397 -13.96636 -13.81820 -13.31030 -13.16060 -12.88345 -12.80250 -12.64978 -12.33815 -12.02922 -11.76972 -11.25626 -10.88412 -9.38395 -8.78354 -8.59712 -6.33827 0.68743 0.76468 1.46316 1.49719 1.59453 2.20242 2.28823 2.68002 2.76090 3.37277 3.69764 3.74244 3.96904 4.18931 4.25277 4.53026 4.71746 4.91778 4.96452 5.03862 5.28803 5.37251 5.54710 5.66922 5.77337 6.14377 6.33367 6.46229 6.91856 6.97076 8.41453 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.013453 C = 0.008195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.628128 B = 2080.893154 C = 3415.792385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.216 4.216 3 C 0.081 3.919 4 F -0.157 7.157 5 C -0.239 4.239 6 C -0.158 4.158 7 C 0.031 3.969 8 O -0.294 6.294 9 C 0.394 3.606 10 F -0.217 7.217 11 F -0.217 7.217 12 C 0.100 3.900 13 C -0.485 4.485 14 H 0.085 0.915 15 C 0.054 3.946 16 N -0.797 5.797 17 Si 0.972 3.028 18 H -0.261 1.261 19 H -0.263 1.263 20 H -0.271 1.271 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.129 0.871 25 H 0.124 0.876 26 H 0.212 0.788 27 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.372 -2.295 -2.032 4.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.219 4.219 3 C 0.062 3.938 4 F -0.136 7.136 5 C -0.259 4.259 6 C -0.177 4.177 7 C -0.013 4.013 8 O -0.210 6.210 9 C 0.304 3.696 10 F -0.199 7.199 11 F -0.199 7.199 12 C 0.097 3.903 13 C -0.514 4.514 14 H 0.103 0.897 15 C -0.164 4.164 16 N -0.421 5.421 17 Si 0.793 3.207 18 H -0.185 1.185 19 H -0.188 1.188 20 H -0.196 1.196 21 H 0.080 0.920 22 H 0.084 0.916 23 H 0.074 0.926 24 H 0.147 0.853 25 H 0.141 0.859 26 H 0.228 0.772 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.412 -2.506 -1.830 4.612 hybrid contribution 0.196 0.017 0.083 0.213 sum 3.608 -2.489 -1.747 4.719 Atomic orbital electron populations 1.20293 0.89990 1.01718 1.01278 1.19998 0.97220 0.90706 1.13931 1.17456 0.90113 0.80247 1.05945 1.91324 1.80710 1.46980 1.94606 1.20374 0.91632 0.98337 1.15508 1.20970 0.99212 0.91752 1.05799 1.19230 0.91921 0.83354 1.06805 1.86655 1.16100 1.30033 1.88239 1.24036 0.81192 0.93498 0.70915 1.93018 1.90137 1.83566 1.53171 1.93014 1.90331 1.83694 1.52825 1.16958 0.88416 0.93230 0.91694 1.19434 1.10822 0.95293 1.25814 0.89707 1.26436 0.93243 1.04229 0.92508 1.69809 1.24527 1.35548 1.12247 0.85310 0.79180 0.76989 0.79171 1.18489 1.18777 1.19610 0.92019 0.91620 0.92573 0.85336 0.85850 0.77225 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.18 9.28 71.24 0.66 -2.52 15 2 C -0.22 -10.56 5.94 -19.39 -0.12 -10.68 15 3 C 0.08 3.85 7.23 22.33 0.16 4.01 15 4 F -0.16 -6.89 16.44 44.97 0.74 -6.15 15 5 C -0.24 -10.87 10.02 22.48 0.23 -10.65 15 6 C -0.16 -7.39 8.25 22.32 0.18 -7.20 15 7 C 0.03 1.55 5.97 23.06 0.14 1.68 15 8 O -0.29 -13.37 7.33 -89.83 -0.66 -14.03 15 9 C 0.39 13.81 5.98 113.37 0.68 14.48 15 10 F -0.22 -7.72 15.58 44.97 0.70 -7.02 15 11 F -0.22 -8.24 15.58 44.97 0.70 -7.54 15 12 C 0.10 5.20 5.36 -21.20 -0.11 5.09 15 13 C -0.49 -24.53 7.59 23.39 0.18 -24.36 15 14 H 0.08 4.14 7.51 -2.91 -0.02 4.12 15 15 C 0.05 2.56 4.41 85.25 0.38 2.93 15 16 N -0.80 -39.19 11.25 21.82 0.25 -38.95 15 17 Si 0.97 36.13 29.60 68.60 2.03 38.16 15 18 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 19 H -0.26 -9.33 7.11 99.48 0.71 -8.63 15 20 H -0.27 -9.76 7.11 99.48 0.71 -9.05 15 21 H 0.06 2.35 8.14 -2.39 -0.02 2.33 15 22 H 0.06 2.76 7.02 -2.38 -0.02 2.74 15 23 H 0.06 2.15 7.63 -2.39 -0.02 2.14 15 24 H 0.13 5.13 8.06 -2.91 -0.02 5.11 15 25 H 0.12 5.33 5.09 -2.91 -0.01 5.31 15 26 H 0.21 4.98 8.14 -2.39 -0.02 4.96 15 27 H 0.29 12.80 8.30 -92.70 -0.77 12.03 15 Total: -1.00 -57.94 247.02 7.35 -50.59 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 1.22 Total: 12.15 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: 2.37 Total: -27.20 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.25 Total: -38.95 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.66 Total: -14.03 kcal Atomic # 9 Polarization: -22.85 SS G_CDS: 2.14 Total: -20.71 kcal Atomic # 14 Polarization: 36.13 SS G_CDS: 2.03 Total: 38.16 kcal Total: -57.94 7.35 -50.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661039.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.575 kcal (2) G-P(sol) polarization free energy of solvation -57.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds