Wall clock time and date at job start Mon Mar 30 2020 06:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36492 * 119.89497 * 2 1 4 4 C 1.40819 * 119.85190 * 179.97438 * 3 2 1 5 5 C 1.41203 * 120.16860 * 179.97438 * 4 3 2 6 6 H 1.07994 * 120.00460 * 334.61994 * 5 4 3 7 7 C 1.39890 * 119.99690 * 154.61342 * 5 4 3 8 8 N 1.30878 * 119.99856 * 342.97382 * 7 5 4 9 9 Si 1.86794 * 119.99849 * 162.97151 * 7 5 4 10 10 H 1.48502 * 109.47173 * 90.00285 * 9 7 5 11 11 H 1.48502 * 109.47307 * 210.00190 * 9 7 5 12 12 H 1.48496 * 109.47200 * 329.99912 * 9 7 5 13 13 C 1.40838 * 119.66045 * 359.97438 * 4 3 2 14 14 C 1.36570 * 119.78960 * 0.05956 * 13 4 3 15 15 F 1.35108 * 119.92428 * 179.97438 * 14 13 4 16 16 C 1.39209 * 119.89624 * 180.02562 * 2 1 3 17 17 O 1.35714 * 119.82799 * 359.97438 * 16 2 1 18 18 C 1.42899 * 116.99991 * 90.00289 * 17 16 2 19 19 F 1.39904 * 109.47143 * 299.99794 * 18 17 16 20 20 F 1.39905 * 109.47488 * 59.99602 * 18 17 16 21 21 H 1.08995 * 109.47195 * 90.00600 * 1 2 3 22 22 H 1.09005 * 109.46787 * 209.99802 * 1 2 3 23 23 H 1.08998 * 109.47450 * 330.00139 * 1 2 3 24 24 H 1.07997 * 120.07270 * 359.72118 * 3 2 1 25 25 H 0.97002 * 119.99828 * 179.97438 * 8 7 5 26 26 H 1.07992 * 120.10722 * 180.02562 * 13 4 3 27 27 H 1.09002 * 109.47411 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1873 1.1833 0.0000 4 6 3.5955 1.1822 0.0005 5 6 4.3061 2.4025 0.0000 6 1 3.8478 3.2941 -0.4016 7 6 5.6036 2.4564 0.5199 8 7 6.0382 1.4962 1.2958 9 14 6.7161 3.8990 0.1066 10 1 6.5332 4.9708 1.1180 11 1 8.1316 3.4499 0.1117 12 1 6.3680 4.4230 -1.2386 13 6 4.2916 -0.0421 0.0016 14 6 3.5965 -1.2177 0.0009 15 9 4.2615 -2.3938 0.0014 16 6 2.2009 -1.2068 -0.0005 17 8 1.5167 -2.3789 -0.0005 18 6 1.1892 -2.9389 -1.2738 19 9 0.3919 -2.0382 -1.9882 20 9 2.3649 -3.1900 -1.9893 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6468 2.1183 -0.0045 25 1 6.9381 1.5335 1.6560 26 1 5.3714 -0.0514 0.0025 27 1 0.6440 -3.8719 -1.1310 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575661054.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:42 Heat of formation + Delta-G solvation = -206.097928 kcal Electronic energy + Delta-G solvation = -18049.021527 eV Core-core repulsion = 14548.588902 eV Total energy + Delta-G solvation = -3500.432626 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.91520 -49.62541 -48.03237 -40.27070 -38.18108 -35.63289 -32.97118 -31.27135 -27.81200 -27.67838 -25.82825 -22.86387 -22.43033 -19.63902 -19.32404 -18.93688 -18.52366 -17.67874 -17.13486 -16.62215 -16.49410 -16.17536 -14.99869 -14.96111 -14.68943 -14.50038 -14.32380 -14.15439 -13.90700 -13.68455 -13.40351 -13.17895 -13.00518 -12.80837 -12.51167 -12.38485 -11.96007 -11.78698 -11.35832 -11.04699 -9.39656 -9.35308 -8.81343 -6.54971 0.43461 0.81990 1.37925 1.43454 1.54938 2.14018 2.26264 2.65916 2.87108 3.43718 3.59154 3.88380 3.92327 4.21894 4.52288 4.75099 4.78827 4.88695 4.93011 5.10299 5.17591 5.19443 5.58394 5.72390 5.81961 5.99955 6.23565 6.49502 6.69880 6.80911 8.14023 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.035063 B = 0.007388 C = 0.006629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.381841 B = 3789.130492 C = 4222.702049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.028 4.028 3 C -0.237 4.237 4 C 0.110 3.890 5 C -0.467 4.467 6 H 0.098 0.902 7 C 0.032 3.968 8 N -0.810 5.810 9 Si 0.992 3.008 10 H -0.256 1.256 11 H -0.268 1.268 12 H -0.253 1.253 13 C -0.231 4.231 14 C 0.106 3.894 15 F -0.159 7.159 16 C -0.122 4.122 17 O -0.322 6.322 18 C 0.380 3.620 19 F -0.215 7.215 20 F -0.228 7.228 21 H 0.076 0.924 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.125 0.875 25 H 0.295 0.705 26 H 0.115 0.885 27 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.262 -2.393 -2.839 7.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.029 4.029 3 C -0.256 4.256 4 C 0.106 3.894 5 C -0.494 4.494 6 H 0.116 0.884 7 C -0.186 4.186 8 N -0.433 5.433 9 Si 0.811 3.189 10 H -0.180 1.180 11 H -0.193 1.193 12 H -0.176 1.176 13 C -0.251 4.251 14 C 0.086 3.914 15 F -0.138 7.138 16 C -0.167 4.167 17 O -0.241 6.241 18 C 0.291 3.709 19 F -0.197 7.197 20 F -0.210 7.210 21 H 0.095 0.905 22 H 0.088 0.912 23 H 0.097 0.903 24 H 0.143 0.857 25 H 0.106 0.894 26 H 0.132 0.868 27 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -6.094 -2.609 -2.564 7.107 hybrid contribution 1.109 0.162 -0.277 1.155 sum -4.984 -2.447 -2.841 6.237 Atomic orbital electron populations 1.20715 0.88971 1.03134 1.02693 1.19634 0.97245 0.90903 0.95140 1.20842 0.93395 0.96914 1.14466 1.17824 0.92208 0.92741 0.86599 1.20038 0.99159 0.96118 1.34097 0.88403 1.27032 0.99441 1.00567 0.91529 1.69893 1.19151 1.33336 1.20943 0.85045 0.76509 0.76973 0.80363 1.18011 1.19278 1.17627 1.20900 1.00066 0.90907 1.13254 1.17931 0.89945 0.80768 1.02771 1.91330 1.81320 1.46883 1.94285 1.17831 0.87149 0.85337 1.26343 1.86579 1.73160 1.36941 1.27394 1.24626 0.77748 0.92076 0.76405 1.92999 1.74011 1.72561 1.80175 1.93015 1.53152 1.94487 1.80319 0.90529 0.91220 0.90282 0.85747 0.89355 0.86760 0.76498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.29 8.79 71.24 0.63 -2.66 15 2 C -0.03 -1.25 5.70 -20.04 -0.11 -1.36 15 3 C -0.24 -11.12 9.37 22.49 0.21 -10.91 15 4 C 0.11 5.77 5.57 -21.28 -0.12 5.65 15 5 C -0.47 -23.54 9.04 23.40 0.21 -23.33 15 6 H 0.10 4.56 7.90 -2.91 -0.02 4.53 15 7 C 0.03 1.53 5.15 85.23 0.44 1.97 15 8 N -0.81 -41.02 10.96 21.82 0.24 -40.78 15 9 Si 0.99 35.45 29.59 68.60 2.03 37.48 15 10 H -0.26 -8.68 7.11 99.48 0.71 -7.97 15 11 H -0.27 -9.29 7.11 99.48 0.71 -8.59 15 12 H -0.25 -8.78 7.11 99.48 0.71 -8.07 15 13 C -0.23 -12.63 8.60 22.52 0.19 -12.44 15 14 C 0.11 5.51 6.98 22.20 0.15 5.66 15 15 F -0.16 -8.15 16.75 44.97 0.75 -7.40 15 16 C -0.12 -5.75 5.34 22.82 0.12 -5.62 15 17 O -0.32 -12.91 9.24 -90.35 -0.83 -13.75 15 18 C 0.38 12.12 6.35 113.37 0.72 12.84 15 19 F -0.22 -7.12 15.16 44.97 0.68 -6.44 15 20 F -0.23 -8.67 16.63 44.97 0.75 -7.92 15 21 H 0.08 2.39 7.28 -2.39 -0.02 2.37 15 22 H 0.07 2.19 7.52 -2.38 -0.02 2.17 15 23 H 0.08 2.31 8.08 -2.39 -0.02 2.29 15 24 H 0.12 5.23 8.06 -2.91 -0.02 5.20 15 25 H 0.30 13.44 8.30 -92.71 -0.77 12.67 15 26 H 0.11 6.53 6.19 -2.91 -0.02 6.51 15 27 H 0.22 4.07 8.14 -2.39 -0.02 4.05 15 Total: -1.00 -61.11 251.99 7.28 -53.83 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 1.21 Total: 15.17 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 2.44 Total: -30.20 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.24 Total: -40.78 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.83 Total: -13.75 kcal Atomic # 9 Polarization: -23.94 SS G_CDS: 2.18 Total: -21.75 kcal Atomic # 14 Polarization: 35.45 SS G_CDS: 2.03 Total: 37.48 kcal Total: -61.11 7.28 -53.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661054.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.266 kcal (2) G-P(sol) polarization free energy of solvation -61.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds