Wall clock time and date at job start Mon Mar 30 2020 06:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37596 * 119.86392 * 2 1 4 4 C 1.40773 * 119.87385 * 180.02562 * 3 2 1 5 5 C 1.41311 * 120.18851 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00264 * 151.47192 * 5 4 3 7 7 C 1.39908 * 119.99766 * 331.47730 * 5 4 3 8 8 N 1.30860 * 119.99939 * 161.22916 * 7 5 4 9 9 Si 1.86798 * 120.00000 * 341.21742 * 7 5 4 10 10 H 1.48507 * 109.46745 * 90.71031 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.70582 * 9 7 5 12 12 H 1.48497 * 109.47466 * 330.70981 * 9 7 5 13 13 C 1.40716 * 119.61989 * 359.97438 * 4 3 2 14 14 C 1.37924 * 119.72900 * 0.02562 * 13 4 3 15 15 O 1.35946 * 119.94234 * 179.97438 * 14 13 4 16 16 C 1.42905 * 116.99825 * 357.01849 * 15 14 13 17 17 F 1.39892 * 109.47401 * 301.91200 * 16 15 14 18 18 F 1.39902 * 109.46586 * 61.91392 * 16 15 14 19 19 C 1.38783 * 119.86084 * 180.02562 * 2 1 3 20 20 F 1.35092 * 119.81108 * 0.02562 * 19 2 1 21 21 H 1.09000 * 109.47410 * 89.99761 * 1 2 3 22 22 H 1.08998 * 109.47133 * 209.99864 * 1 2 3 23 23 H 1.08996 * 109.47165 * 329.99666 * 1 2 3 24 24 H 1.07993 * 120.06006 * 359.72907 * 3 2 1 25 25 H 0.97000 * 120.00106 * 179.97438 * 8 7 5 26 26 H 1.08005 * 120.13589 * 179.97438 * 13 4 3 27 27 H 1.08998 * 109.46814 * 181.90863 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1921 1.1932 0.0000 4 6 3.5998 1.1935 -0.0005 5 6 4.3102 2.4151 -0.0011 6 1 5.2922 2.4689 0.4452 7 6 3.7413 3.5548 -0.5797 8 7 4.1995 4.7418 -0.2742 9 14 2.3278 3.3820 -1.7887 10 1 1.0386 3.4340 -1.0534 11 1 2.3807 4.4918 -2.7740 12 1 2.4403 2.0831 -2.4995 13 6 4.2955 -0.0297 -0.0005 14 6 3.5926 -1.2163 -0.0005 15 8 4.2603 -2.4005 -0.0011 16 6 5.6865 -2.3411 -0.0678 17 9 6.0710 -1.6536 -1.2239 18 9 6.1785 -1.6719 1.0580 19 6 2.1979 -1.2036 -0.0005 20 9 1.5158 -2.3696 -0.0016 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 1.6509 2.1278 -0.0044 25 1 3.8054 5.5320 -0.6756 26 1 5.3755 -0.0392 -0.0014 27 1 6.0914 -3.3527 -0.0950 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575661055.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:07 Heat of formation + Delta-G solvation = -200.458302 kcal Electronic energy + Delta-G solvation = -18035.470234 eV Core-core repulsion = 14535.282161 eV Total energy + Delta-G solvation = -3500.188073 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.23680 -49.42374 -48.25188 -40.53982 -38.63037 -35.65445 -33.40535 -31.64675 -27.82121 -27.55779 -26.52079 -23.39410 -22.21475 -20.10460 -19.25277 -18.83585 -18.70809 -17.97608 -17.43384 -16.88540 -16.50829 -16.05493 -15.24639 -15.10247 -14.76400 -14.71589 -14.53199 -14.41553 -14.19555 -14.05076 -13.78973 -13.39321 -13.23944 -13.08267 -12.75127 -12.28285 -12.08227 -11.83046 -11.51775 -11.03067 -9.51742 -9.25619 -9.02988 -6.65131 0.43492 0.50195 1.23898 1.37292 1.46750 1.68597 2.06508 2.33997 2.61997 3.20911 3.57333 3.60428 3.74037 3.96252 4.31631 4.34290 4.47073 4.55379 4.77988 4.98240 5.04448 5.10951 5.35404 5.49227 5.59626 5.76511 6.07721 6.20745 6.53252 6.64202 8.03928 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.020918 B = 0.010693 C = 0.007768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.267831 B = 2618.027998 C = 3603.445678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.045 4.045 3 C -0.249 4.249 4 C 0.097 3.903 5 C -0.467 4.467 6 H 0.061 0.939 7 C 0.053 3.947 8 N -0.827 5.827 9 Si 0.962 3.038 10 H -0.241 1.241 11 H -0.271 1.271 12 H -0.258 1.258 13 C -0.279 4.279 14 C 0.113 3.887 15 O -0.332 6.332 16 C 0.405 3.595 17 F -0.213 7.213 18 F -0.214 7.214 19 C -0.065 4.065 20 F -0.151 7.151 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.123 0.877 25 H 0.301 0.699 26 H 0.119 0.881 27 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.622 -9.354 -1.730 9.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.046 4.046 3 C -0.268 4.268 4 C 0.094 3.906 5 C -0.495 4.495 6 H 0.079 0.921 7 C -0.165 4.165 8 N -0.451 5.451 9 Si 0.784 3.216 10 H -0.166 1.166 11 H -0.197 1.197 12 H -0.182 1.182 13 C -0.299 4.299 14 C 0.069 3.931 15 O -0.249 6.249 16 C 0.316 3.684 17 F -0.194 7.194 18 F -0.195 7.195 19 C -0.085 4.085 20 F -0.131 7.131 21 H 0.103 0.897 22 H 0.095 0.905 23 H 0.101 0.899 24 H 0.140 0.860 25 H 0.112 0.888 26 H 0.137 0.863 27 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -2.629 -9.237 -1.708 9.755 hybrid contribution 0.325 0.436 -0.228 0.590 sum -2.304 -8.801 -1.936 9.302 Atomic orbital electron populations 1.20784 0.88328 1.03848 1.03553 1.19703 0.97626 0.90316 0.96927 1.21011 0.93574 0.96896 1.15335 1.17642 0.92237 0.92469 0.88230 1.19463 1.03681 0.92552 1.33761 0.92055 1.26886 0.99228 0.93491 0.96915 1.69703 1.39622 0.99998 1.35804 0.85589 0.78594 0.79133 0.78299 1.16580 1.19723 1.18230 1.21244 0.99219 0.91130 1.18265 1.18698 0.90530 0.84348 0.99531 1.86520 1.20237 1.29599 1.88594 1.24362 0.77935 0.95192 0.70933 1.93064 1.90813 1.83885 1.51685 1.93058 1.87656 1.84646 1.54186 1.16435 0.85812 0.81693 1.24537 1.91302 1.79522 1.46338 1.95909 0.89700 0.90459 0.89924 0.85977 0.88846 0.86293 0.74138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.45 9.82 71.23 0.70 -2.75 15 2 C -0.04 -1.88 5.88 -19.89 -0.12 -2.00 15 3 C -0.25 -11.58 6.94 22.74 0.16 -11.43 15 4 C 0.10 5.01 5.13 -21.30 -0.11 4.90 15 5 C -0.47 -25.73 9.56 23.43 0.22 -25.51 15 6 H 0.06 3.65 8.06 -2.91 -0.02 3.63 15 7 C 0.05 2.71 5.40 85.24 0.46 3.17 15 8 N -0.83 -43.17 13.93 21.82 0.30 -42.86 15 9 Si 0.96 40.43 24.55 68.60 1.68 42.11 15 10 H -0.24 -9.20 6.45 99.48 0.64 -8.56 15 11 H -0.27 -10.56 7.11 99.48 0.71 -9.85 15 12 H -0.26 -11.38 7.04 99.48 0.70 -10.68 15 13 C -0.28 -13.55 7.99 22.80 0.18 -13.36 15 14 C 0.11 5.07 6.48 22.49 0.15 5.21 15 15 O -0.33 -12.44 10.29 -92.94 -0.96 -13.40 15 16 C 0.40 11.72 5.98 113.37 0.68 12.40 15 17 F -0.21 -7.24 15.58 44.97 0.70 -6.54 15 18 F -0.21 -7.24 15.58 44.97 0.70 -6.54 15 19 C -0.06 -2.84 7.27 22.70 0.17 -2.68 15 20 F -0.15 -6.24 16.29 44.97 0.73 -5.51 15 21 H 0.08 2.40 8.14 -2.39 -0.02 2.38 15 22 H 0.08 2.25 7.62 -2.39 -0.02 2.23 15 23 H 0.08 2.35 8.08 -2.39 -0.02 2.33 15 24 H 0.12 5.43 4.43 -2.91 -0.01 5.42 15 25 H 0.30 13.89 8.30 -92.71 -0.77 13.12 15 26 H 0.12 5.74 5.08 -2.91 -0.01 5.72 15 27 H 0.24 3.42 8.14 -2.39 -0.02 3.40 15 Total: -1.00 -62.45 245.14 6.81 -55.64 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 1.15 Total: 9.14 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: 2.49 Total: -32.04 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.30 Total: -42.86 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.96 Total: -13.40 kcal Atomic # 9 Polarization: -20.73 SS G_CDS: 2.13 Total: -18.59 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 1.68 Total: 42.11 kcal Total: -62.45 6.81 -55.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661055.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.813 kcal (2) G-P(sol) polarization free energy of solvation -62.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds