Wall clock time and date at job start Mon Mar 30 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37903 * 120.08265 * 2 1 4 4 F 1.35108 * 119.87083 * 359.95487 * 3 2 1 5 5 C 1.38741 * 120.25313 * 179.72283 * 3 2 1 6 6 C 1.39114 * 120.41880 * 0.51865 * 5 3 2 7 7 O 1.35897 * 119.92167 * 179.76082 * 6 5 3 8 8 C 1.42902 * 117.00044 * 359.72529 * 7 6 5 9 9 F 1.39906 * 109.46952 * 299.99965 * 8 7 6 10 10 F 1.39896 * 109.47318 * 59.99412 * 8 7 6 11 11 C 1.38116 * 120.16152 * 359.48034 * 6 5 3 12 12 C 1.40657 * 119.74095 * 0.26414 * 11 6 5 13 13 C 1.41410 * 120.20237 * 179.97438 * 12 11 6 14 14 H 1.08001 * 119.99903 * 149.69415 * 13 12 11 15 15 C 1.39930 * 119.99921 * 329.69529 * 13 12 11 16 16 N 1.30826 * 119.99936 * 162.15185 * 15 13 12 17 17 Si 1.86802 * 119.99910 * 342.15275 * 15 13 12 18 18 H 1.48499 * 109.47294 * 95.38992 * 17 15 13 19 19 H 1.48509 * 109.46807 * 215.38981 * 17 15 13 20 20 H 1.48503 * 109.46941 * 335.38827 * 17 15 13 21 21 H 1.08995 * 109.46931 * 270.02167 * 1 2 3 22 22 H 1.09000 * 109.47287 * 30.02039 * 1 2 3 23 23 H 1.08998 * 109.46984 * 150.02129 * 1 2 3 24 24 H 1.07997 * 119.79115 * 180.25127 * 5 3 2 25 25 H 1.08998 * 109.47553 * 180.02562 * 8 7 6 26 26 H 1.08000 * 120.12727 * 180.27869 * 11 6 5 27 27 H 0.97004 * 120.00112 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1933 0.0000 4 9 1.5218 2.3628 -0.0009 5 6 3.5857 1.1974 0.0058 6 6 4.2936 -0.0001 0.0008 7 8 5.6525 0.0158 0.0016 8 6 6.2864 1.2965 0.0017 9 9 5.9028 2.0067 -1.1411 10 9 5.9014 2.0074 1.1434 11 6 3.6188 -1.2052 0.0008 12 6 2.2123 -1.2173 0.0003 13 6 1.5115 -2.4455 -0.0002 14 1 0.5423 -2.5145 0.4714 15 6 2.0737 -3.5716 -0.6117 16 7 1.6213 -4.7654 -0.3261 17 14 3.4703 -3.3701 -1.8359 18 1 4.7692 -3.5492 -1.1389 19 1 3.3393 -4.3891 -2.9083 20 1 3.4124 -2.0120 -2.4337 21 1 -0.3633 0.0004 1.0276 22 1 -0.3634 0.8898 -0.5141 23 1 -0.3633 -0.8902 -0.5135 24 1 4.1194 2.1363 0.0099 25 1 7.3686 1.1664 0.0019 26 1 4.1690 -2.1345 0.0015 27 1 2.0113 -5.5461 -0.7497 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575661057.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:10 Heat of formation + Delta-G solvation = -184.910592 kcal Electronic energy + Delta-G solvation = -18006.746939 eV Core-core repulsion = 14507.233065 eV Total energy + Delta-G solvation = -3499.513874 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.01501 -48.00399 -47.01486 -39.00804 -36.84661 -33.62370 -31.25827 -30.19446 -27.02782 -25.27257 -24.58981 -21.70977 -20.52606 -18.67465 -18.05172 -17.57959 -17.05609 -15.85882 -15.28875 -14.96148 -14.81495 -14.46118 -14.22267 -14.00446 -13.47350 -13.27890 -13.12647 -13.03959 -12.38430 -12.22472 -12.13816 -11.80383 -11.44219 -11.16694 -10.98385 -10.61530 -10.07421 -9.94031 -9.89083 -9.30278 -7.78575 -7.33211 -7.14270 -4.74269 2.29460 2.31964 3.04004 3.06707 3.12304 3.24414 3.77997 3.87158 4.18821 4.58712 4.90827 5.13014 5.26142 5.86319 6.01735 6.05426 6.16740 6.50172 6.55632 6.73339 6.84249 6.94252 7.11619 7.24119 7.44386 7.63642 7.93685 8.14976 8.37303 8.56841 9.85286 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.021926 B = 0.010435 C = 0.007731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.727925 B = 2682.690398 C = 3620.908496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.229 4.229 3 C 0.157 3.843 4 F -0.155 7.155 5 C -0.343 4.343 6 C 0.157 3.843 7 O -0.326 6.326 8 C 0.412 3.588 9 F -0.203 7.203 10 F -0.202 7.202 11 C -0.258 4.258 12 C 0.132 3.868 13 C -0.427 4.427 14 H 0.102 0.898 15 C 0.086 3.914 16 N -0.792 5.792 17 Si 0.909 3.091 18 H -0.265 1.265 19 H -0.287 1.287 20 H -0.242 1.242 21 H 0.049 0.951 22 H 0.044 0.956 23 H 0.070 0.930 24 H 0.119 0.881 25 H 0.171 0.829 26 H 0.117 0.883 27 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.832 6.099 -0.953 9.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.231 4.231 3 C 0.137 3.863 4 F -0.134 7.134 5 C -0.363 4.363 6 C 0.115 3.885 7 O -0.244 6.244 8 C 0.321 3.679 9 F -0.184 7.184 10 F -0.184 7.184 11 C -0.278 4.278 12 C 0.128 3.872 13 C -0.454 4.454 14 H 0.120 0.880 15 C -0.136 4.136 16 N -0.414 5.414 17 Si 0.735 3.265 18 H -0.191 1.191 19 H -0.214 1.214 20 H -0.165 1.165 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.089 0.911 24 H 0.137 0.863 25 H 0.188 0.812 26 H 0.134 0.866 27 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.841 5.716 -0.957 8.966 hybrid contribution 0.527 0.476 -0.454 0.843 sum 7.368 6.192 -1.411 9.727 Atomic orbital electron populations 1.20334 0.91706 1.01492 1.00599 1.19726 0.95860 0.91074 1.16431 1.16974 0.88924 0.80039 1.00318 1.91355 1.80590 1.47398 1.94075 1.20503 0.93390 0.96637 1.25794 1.18243 0.78757 0.94438 0.97094 1.86555 1.20619 1.28353 1.88913 1.23165 0.96858 0.76008 0.71889 1.93076 1.93395 1.79784 1.52185 1.93072 1.93344 1.79738 1.52222 1.20354 0.93974 0.94216 1.19227 1.17073 0.89669 0.92387 0.88080 1.19500 1.05277 0.90654 1.29952 0.88031 1.26227 0.96873 0.94144 0.96341 1.69673 1.37857 0.99359 1.34509 0.86320 0.80261 0.80137 0.79802 1.19123 1.21436 1.16526 0.93267 0.93660 0.91086 0.86310 0.81234 0.86576 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.74 9.23 36.01 0.33 -1.41 15 2 C -0.23 -5.39 5.95 -103.82 -0.62 -6.01 15 3 C 0.16 3.63 7.23 -39.52 -0.29 3.34 15 4 F -0.16 -3.39 16.45 2.25 0.04 -3.36 15 5 C -0.34 -7.74 8.24 -39.07 -0.32 -8.06 15 6 C 0.16 3.57 6.47 -39.30 -0.25 3.31 15 7 O -0.33 -6.30 10.42 -19.42 -0.20 -6.50 15 8 C 0.41 6.06 5.98 101.05 0.60 6.66 15 9 F -0.20 -3.31 15.59 2.25 0.04 -3.28 15 10 F -0.20 -3.27 15.55 2.25 0.04 -3.24 15 11 C -0.26 -6.25 7.09 -38.71 -0.27 -6.52 15 12 C 0.13 3.27 5.09 -106.85 -0.54 2.73 15 13 C -0.43 -10.89 8.52 -37.74 -0.32 -11.21 15 14 H 0.10 2.66 7.23 -52.49 -0.38 2.28 15 15 C 0.09 2.13 5.41 -17.35 -0.09 2.03 15 16 N -0.79 -19.85 13.93 55.55 0.77 -19.08 15 17 Si 0.91 20.09 24.52 -169.99 -4.17 15.92 15 18 H -0.27 -5.74 6.72 56.52 0.38 -5.36 15 19 H -0.29 -6.06 7.11 56.52 0.40 -5.66 15 20 H -0.24 -5.59 6.86 56.52 0.39 -5.20 15 21 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 22 H 0.04 0.85 7.63 -51.93 -0.40 0.46 15 23 H 0.07 1.46 6.85 -51.93 -0.36 1.10 15 24 H 0.12 2.52 5.06 -52.49 -0.27 2.25 15 25 H 0.17 1.46 8.14 -51.93 -0.42 1.04 15 26 H 0.12 2.78 4.77 -52.49 -0.25 2.53 15 27 H 0.29 6.56 8.30 -40.82 -0.34 6.22 15 LS Contribution 242.48 15.07 3.65 3.65 Total: -1.00 -27.53 242.48 -3.28 -30.80 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -1.66 Total: 0.20 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -1.78 Total: -15.12 kcal Atomic # 7 Polarization: -19.85 SS G_CDS: 0.77 Total: -19.08 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.20 Total: -6.50 kcal Atomic # 9 Polarization: -9.98 SS G_CDS: 0.11 Total: -9.87 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.17 Total: 15.92 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -27.53 -3.28 -30.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661057.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.106 kcal (2) G-P(sol) polarization free energy of solvation -27.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds