Wall clock time and date at job start Mon Mar 30 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37903 * 120.08265 * 2 1 4 4 F 1.35108 * 119.87083 * 359.95487 * 3 2 1 5 5 C 1.38741 * 120.25313 * 179.72283 * 3 2 1 6 6 C 1.39114 * 120.41880 * 0.51865 * 5 3 2 7 7 O 1.35897 * 119.92167 * 179.76082 * 6 5 3 8 8 C 1.42902 * 117.00044 * 359.72529 * 7 6 5 9 9 F 1.39906 * 109.46952 * 299.99965 * 8 7 6 10 10 F 1.39896 * 109.47318 * 59.99412 * 8 7 6 11 11 C 1.38116 * 120.16152 * 359.48034 * 6 5 3 12 12 C 1.40657 * 119.74095 * 0.26414 * 11 6 5 13 13 C 1.41410 * 120.20237 * 179.97438 * 12 11 6 14 14 H 1.08001 * 119.99903 * 149.69415 * 13 12 11 15 15 C 1.39930 * 119.99921 * 329.69529 * 13 12 11 16 16 N 1.30826 * 119.99936 * 162.15185 * 15 13 12 17 17 Si 1.86802 * 119.99910 * 342.15275 * 15 13 12 18 18 H 1.48499 * 109.47294 * 95.38992 * 17 15 13 19 19 H 1.48509 * 109.46807 * 215.38981 * 17 15 13 20 20 H 1.48503 * 109.46941 * 335.38827 * 17 15 13 21 21 H 1.08995 * 109.46931 * 270.02167 * 1 2 3 22 22 H 1.09000 * 109.47287 * 30.02039 * 1 2 3 23 23 H 1.08998 * 109.46984 * 150.02129 * 1 2 3 24 24 H 1.07997 * 119.79115 * 180.25127 * 5 3 2 25 25 H 1.08998 * 109.47553 * 180.02562 * 8 7 6 26 26 H 1.08000 * 120.12727 * 180.27869 * 11 6 5 27 27 H 0.97004 * 120.00112 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1933 0.0000 4 9 1.5218 2.3628 -0.0009 5 6 3.5857 1.1974 0.0058 6 6 4.2936 -0.0001 0.0008 7 8 5.6525 0.0158 0.0016 8 6 6.2864 1.2965 0.0017 9 9 5.9028 2.0067 -1.1411 10 9 5.9014 2.0074 1.1434 11 6 3.6188 -1.2052 0.0008 12 6 2.2123 -1.2173 0.0003 13 6 1.5115 -2.4455 -0.0002 14 1 0.5423 -2.5145 0.4714 15 6 2.0737 -3.5716 -0.6117 16 7 1.6213 -4.7654 -0.3261 17 14 3.4703 -3.3701 -1.8359 18 1 4.7692 -3.5492 -1.1389 19 1 3.3393 -4.3891 -2.9083 20 1 3.4124 -2.0120 -2.4337 21 1 -0.3633 0.0004 1.0276 22 1 -0.3634 0.8898 -0.5141 23 1 -0.3633 -0.8902 -0.5135 24 1 4.1194 2.1363 0.0099 25 1 7.3686 1.1664 0.0019 26 1 4.1690 -2.1345 0.0015 27 1 2.0113 -5.5461 -0.7497 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575661057.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:10 Heat of formation + Delta-G solvation = -201.366510 kcal Electronic energy + Delta-G solvation = -18007.460521 eV Core-core repulsion = 14507.233065 eV Total energy + Delta-G solvation = -3500.227456 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.24714 -49.78335 -48.24959 -40.66524 -38.53143 -35.48099 -32.98565 -32.03486 -28.63521 -26.94161 -26.13243 -23.52945 -22.19378 -20.36235 -19.43025 -18.83389 -18.73312 -17.50292 -17.06767 -16.70373 -16.57870 -16.19286 -15.82155 -15.39452 -14.92669 -14.83955 -14.58447 -14.56609 -14.07368 -13.93094 -13.64846 -13.40801 -13.05733 -12.97481 -12.70279 -12.37549 -11.82982 -11.72217 -11.68398 -11.11564 -9.64143 -9.11158 -9.00681 -6.66721 0.46191 0.49551 1.27275 1.37174 1.47019 1.75166 2.08888 2.35238 2.59897 3.20531 3.42358 3.65258 3.75160 4.09541 4.21931 4.31863 4.42650 4.78839 4.91169 4.96764 5.11747 5.16163 5.30475 5.44080 5.69095 5.81073 6.07301 6.27984 6.51496 6.66498 8.03916 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.021926 B = 0.010435 C = 0.007731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.727925 B = 2682.690398 C = 3620.908496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.243 4.243 3 C 0.148 3.852 4 F -0.148 7.148 5 C -0.340 4.340 6 C 0.160 3.840 7 O -0.333 6.333 8 C 0.404 3.596 9 F -0.212 7.212 10 F -0.211 7.211 11 C -0.276 4.276 12 C 0.120 3.880 13 C -0.451 4.451 14 H 0.082 0.918 15 C 0.059 3.941 16 N -0.821 5.821 17 Si 0.954 3.046 18 H -0.257 1.257 19 H -0.270 1.270 20 H -0.259 1.259 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.133 0.867 25 H 0.241 0.759 26 H 0.116 0.884 27 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.467 7.027 -1.377 11.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.245 4.245 3 C 0.129 3.871 4 F -0.127 7.127 5 C -0.360 4.360 6 C 0.117 3.883 7 O -0.251 6.251 8 C 0.315 3.685 9 F -0.194 7.194 10 F -0.193 7.193 11 C -0.295 4.295 12 C 0.116 3.884 13 C -0.478 4.478 14 H 0.100 0.900 15 C -0.160 4.160 16 N -0.445 5.445 17 Si 0.778 3.222 18 H -0.182 1.182 19 H -0.196 1.196 20 H -0.183 1.183 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.151 0.849 25 H 0.257 0.743 26 H 0.133 0.867 27 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.478 6.644 -1.375 10.859 hybrid contribution 0.066 0.339 -0.276 0.442 sum 8.544 6.983 -1.652 11.158 Atomic orbital electron populations 1.20330 0.90085 1.01963 1.01351 1.20055 0.97369 0.90961 1.16140 1.17095 0.89362 0.80229 1.00404 1.91369 1.80485 1.46799 1.94000 1.20749 0.93318 0.97317 1.24653 1.18237 0.80552 0.93770 0.95746 1.86553 1.18506 1.31509 1.88513 1.24338 0.99145 0.74119 0.70924 1.93056 1.93678 1.79883 1.52776 1.93054 1.93623 1.79823 1.52777 1.20442 0.93951 0.95050 1.20099 1.17223 0.90337 0.92570 0.88228 1.19468 1.05044 0.91748 1.31567 0.90030 1.26735 0.98391 0.93750 0.97118 1.69671 1.39150 1.00000 1.35643 0.85638 0.78612 0.79432 0.78562 1.18198 1.19596 1.18299 0.92328 0.92031 0.91681 0.84920 0.74337 0.86663 0.88871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.29 9.23 71.24 0.66 -2.63 15 2 C -0.24 -11.37 5.95 -19.34 -0.12 -11.49 15 3 C 0.15 6.69 7.23 22.31 0.16 6.85 15 4 F -0.15 -6.19 16.45 44.97 0.74 -5.45 15 5 C -0.34 -14.74 8.24 22.60 0.19 -14.56 15 6 C 0.16 7.02 6.47 22.45 0.15 7.16 15 7 O -0.33 -11.93 10.42 -92.39 -0.96 -12.89 15 8 C 0.40 10.38 5.98 113.37 0.68 11.05 15 9 F -0.21 -6.27 15.59 44.97 0.70 -5.57 15 10 F -0.21 -6.20 15.55 44.97 0.70 -5.50 15 11 C -0.28 -13.17 7.09 22.83 0.16 -13.01 15 12 C 0.12 5.98 5.09 -21.31 -0.11 5.87 15 13 C -0.45 -23.46 8.52 23.46 0.20 -23.26 15 14 H 0.08 4.44 7.23 -2.91 -0.02 4.42 15 15 C 0.06 2.95 5.41 85.25 0.46 3.41 15 16 N -0.82 -41.47 13.93 21.82 0.30 -41.17 15 17 Si 0.95 40.83 24.52 68.60 1.68 42.51 15 18 H -0.26 -10.53 6.72 99.48 0.67 -9.87 15 19 H -0.27 -10.67 7.11 99.48 0.71 -9.96 15 20 H -0.26 -11.70 6.86 99.48 0.68 -11.02 15 21 H 0.06 2.24 8.14 -2.39 -0.02 2.22 15 22 H 0.06 2.26 7.63 -2.39 -0.02 2.24 15 23 H 0.06 2.70 6.85 -2.39 -0.02 2.68 15 24 H 0.13 5.31 5.06 -2.91 -0.01 5.30 15 25 H 0.24 2.78 8.14 -2.39 -0.02 2.76 15 26 H 0.12 5.44 4.77 -2.91 -0.01 5.43 15 27 H 0.30 13.54 8.30 -92.71 -0.77 12.77 15 Total: -1.00 -58.45 242.48 6.76 -51.70 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 1.16 Total: 6.98 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: 2.43 Total: -30.61 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.30 Total: -41.17 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.96 Total: -12.89 kcal Atomic # 9 Polarization: -18.66 SS G_CDS: 2.14 Total: -16.52 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 1.68 Total: 42.51 kcal Total: -58.45 6.76 -51.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661057.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.668 kcal (2) G-P(sol) polarization free energy of solvation -58.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds