Wall clock time and date at job start Mon Mar 30 2020 06:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38320 * 119.90106 * 2 1 4 4 C 1.39015 * 120.56615 * 179.97438 * 3 2 1 5 5 F 1.35101 * 119.82329 * 179.97438 * 4 3 2 6 6 C 1.37703 * 120.35928 * 0.02562 * 4 3 2 7 7 C 1.40695 * 119.78285 * 359.97438 * 6 4 3 8 8 C 1.41145 * 120.27149 * 179.97438 * 7 6 4 9 9 H 1.08006 * 119.99548 * 154.64918 * 8 7 6 10 10 C 1.39930 * 120.00153 * 334.64851 * 8 7 6 11 11 N 1.30863 * 119.99916 * 342.87461 * 10 8 7 12 12 Si 1.86797 * 119.99743 * 162.87083 * 10 8 7 13 13 H 1.48499 * 109.47357 * 94.96721 * 12 10 8 14 14 H 1.48507 * 109.46744 * 214.96313 * 12 10 8 15 15 H 1.48497 * 109.47541 * 334.96106 * 12 10 8 16 16 C 1.38363 * 119.89729 * 179.72250 * 2 1 3 17 17 O 1.35673 * 120.18032 * 359.97438 * 16 2 1 18 18 C 1.42896 * 116.99891 * 90.00320 * 17 16 2 19 19 F 1.39906 * 109.46980 * 299.99742 * 18 17 16 20 20 F 1.39909 * 109.47237 * 59.99645 * 18 17 16 21 21 H 1.09010 * 109.46911 * 90.00309 * 1 2 3 22 22 H 1.08995 * 109.47611 * 330.00643 * 1 2 3 23 23 H 1.09002 * 109.47458 * 209.99929 * 1 2 3 24 24 H 1.07998 * 119.71542 * 0.02562 * 3 2 1 25 25 H 1.07991 * 120.10624 * 179.97438 * 6 4 3 26 26 H 0.96996 * 119.99917 * 180.02562 * 11 10 8 27 27 H 1.08995 * 109.47211 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1965 1.1991 0.0000 4 6 3.5865 1.2152 0.0005 5 9 4.2448 2.3950 0.0000 6 6 4.2962 0.0352 0.0005 7 6 3.6100 -1.1931 0.0006 8 6 4.3271 -2.4088 0.0000 9 1 3.8735 -3.3034 0.4005 10 6 5.6256 -2.4549 -0.5194 11 7 6.0545 -1.4924 -1.2954 12 14 6.7468 -3.8903 -0.1048 13 1 6.6607 -4.9120 -1.1790 14 1 8.1469 -3.4081 0.0085 15 1 6.3245 -4.4918 1.1855 16 6 2.1966 -1.1995 0.0058 17 8 1.5198 -2.3754 0.0120 18 6 1.1958 -2.9441 -1.2582 19 9 0.3930 -2.0521 -1.9774 20 9 2.3731 -3.1916 -1.9724 21 1 -0.3633 -0.0001 -1.0278 22 1 -0.3634 0.8900 0.5137 23 1 -0.3634 -0.8900 0.5138 24 1 1.6502 2.1307 0.0004 25 1 5.3760 0.0525 0.0005 26 1 6.9545 -1.5246 -1.6557 27 1 0.6564 -3.8796 -1.1105 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575661069.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:21 Heat of formation + Delta-G solvation = -204.515913 kcal Electronic energy + Delta-G solvation = -18304.258232 eV Core-core repulsion = 14803.894208 eV Total energy + Delta-G solvation = -3500.364024 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.69209 -49.63522 -47.83979 -40.28770 -37.54209 -35.92452 -32.97388 -30.95963 -27.88157 -27.37411 -26.03366 -22.85175 -22.24710 -19.40027 -19.17257 -18.74437 -18.48745 -17.67486 -17.09744 -16.50822 -16.38055 -16.26766 -14.85567 -14.79682 -14.55146 -14.36048 -14.26989 -14.23357 -13.80828 -13.71348 -13.40924 -12.97623 -12.88367 -12.76697 -12.38239 -12.35829 -12.02219 -11.92047 -11.12120 -11.07901 -9.50092 -9.14600 -8.76586 -6.50018 0.47571 0.78960 1.36983 1.45876 1.53778 2.15450 2.34914 2.71961 3.02835 3.49146 3.67570 4.02366 4.11862 4.25408 4.40394 4.64458 4.86190 4.90491 4.98539 5.00379 5.18244 5.34597 5.58556 5.71856 5.83660 6.14289 6.18024 6.53397 6.71922 6.91489 8.16949 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.018826 B = 0.012316 C = 0.008174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.937250 B = 2272.937515 C = 3424.560593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.030 4.030 3 C -0.278 4.278 4 C 0.104 3.896 5 F -0.162 7.162 6 C -0.227 4.227 7 C 0.104 3.896 8 C -0.446 4.446 9 H 0.088 0.912 10 C 0.034 3.966 11 N -0.809 5.809 12 Si 0.986 3.014 13 H -0.260 1.260 14 H -0.265 1.265 15 H -0.252 1.252 16 C -0.084 4.084 17 O -0.320 6.320 18 C 0.384 3.616 19 F -0.222 7.222 20 F -0.220 7.220 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.132 0.868 25 H 0.115 0.885 26 H 0.294 0.706 27 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.183 -3.753 0.717 7.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.031 4.031 3 C -0.298 4.298 4 C 0.085 3.915 5 F -0.141 7.141 6 C -0.247 4.247 7 C 0.100 3.900 8 C -0.473 4.473 9 H 0.106 0.894 10 C -0.184 4.184 11 N -0.433 5.433 12 Si 0.805 3.195 13 H -0.185 1.185 14 H -0.189 1.189 15 H -0.175 1.175 16 C -0.128 4.128 17 O -0.239 6.239 18 C 0.295 3.705 19 F -0.204 7.204 20 F -0.202 7.202 21 H 0.091 0.909 22 H 0.099 0.901 23 H 0.090 0.910 24 H 0.150 0.850 25 H 0.133 0.867 26 H 0.105 0.895 27 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -6.012 -3.709 0.680 7.096 hybrid contribution 1.061 0.101 -0.453 1.158 sum -4.951 -3.608 0.227 6.130 Atomic orbital electron populations 1.20705 0.89015 1.03238 1.02548 1.19833 0.97159 0.90991 0.95075 1.20320 0.90990 0.98336 1.20139 1.17911 0.91110 0.80017 1.02508 1.91334 1.81946 1.46473 1.94384 1.21093 0.99940 0.90800 1.12854 1.17828 0.90948 0.93420 0.87795 1.19716 0.98407 0.95845 1.33381 0.89416 1.26951 0.99495 1.00292 0.91628 1.69882 1.19153 1.33178 1.21043 0.85129 0.76838 0.77293 0.80224 1.18485 1.18929 1.17547 1.18403 0.89748 0.83947 1.20719 1.86459 1.73373 1.36996 1.27089 1.24458 0.77787 0.91735 0.76545 1.92978 1.73974 1.73301 1.80162 1.93073 1.52431 1.94472 1.80242 0.90901 0.90141 0.91038 0.84978 0.86717 0.89535 0.77257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.28 8.80 71.23 0.63 -2.66 15 2 C -0.03 -1.31 5.73 -19.82 -0.11 -1.42 15 3 C -0.28 -12.48 9.67 22.48 0.22 -12.26 15 4 C 0.10 5.19 7.28 22.33 0.16 5.35 15 5 F -0.16 -7.75 17.26 44.97 0.78 -6.97 15 6 C -0.23 -12.26 8.65 22.74 0.20 -12.06 15 7 C 0.10 5.55 5.45 -21.20 -0.12 5.43 15 8 C -0.45 -23.17 7.41 23.39 0.17 -22.99 15 9 H 0.09 4.41 7.65 -2.91 -0.02 4.39 15 10 C 0.03 1.66 5.15 85.25 0.44 2.10 15 11 N -0.81 -41.68 10.97 21.83 0.24 -41.44 15 12 Si 0.99 36.85 29.59 68.60 2.03 38.88 15 13 H -0.26 -9.38 7.11 99.48 0.71 -8.68 15 14 H -0.26 -9.46 7.11 99.48 0.71 -8.75 15 15 H -0.25 -9.14 7.11 99.48 0.71 -8.43 15 16 C -0.08 -4.05 5.34 23.06 0.12 -3.93 15 17 O -0.32 -13.45 8.70 -89.90 -0.78 -14.23 15 18 C 0.38 13.51 6.35 113.37 0.72 14.23 15 19 F -0.22 -8.00 15.19 44.97 0.68 -7.32 15 20 F -0.22 -9.54 15.79 44.97 0.71 -8.83 15 21 H 0.07 2.33 7.30 -2.38 -0.02 2.32 15 22 H 0.08 2.27 8.08 -2.39 -0.02 2.25 15 23 H 0.07 2.25 7.51 -2.39 -0.02 2.24 15 24 H 0.13 5.12 8.06 -2.91 -0.02 5.10 15 25 H 0.11 6.48 6.20 -2.92 -0.02 6.46 15 26 H 0.29 13.61 8.30 -92.71 -0.77 12.84 15 27 H 0.21 4.65 8.14 -2.39 -0.02 4.63 15 Total: -1.00 -61.05 249.90 7.30 -53.75 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 1.21 Total: 14.37 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: 2.43 Total: -28.21 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.24 Total: -41.44 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.78 Total: -14.23 kcal Atomic # 9 Polarization: -25.28 SS G_CDS: 2.17 Total: -23.11 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 2.03 Total: 38.88 kcal Total: -61.05 7.30 -53.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661069.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.770 kcal (2) G-P(sol) polarization free energy of solvation -61.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds