Wall clock time and date at job start Mon Mar 30 2020 06:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38650 * 119.98420 * 2 1 4 4 F 1.35103 * 119.73385 * 359.97339 * 3 2 1 5 5 C 1.39077 * 120.53062 * 179.70042 * 3 2 1 6 6 C 1.36452 * 120.50037 * 0.27690 * 5 3 2 7 7 C 1.40729 * 119.95533 * 359.97438 * 6 5 3 8 8 C 1.41092 * 120.26179 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00335 * 204.78009 * 8 7 6 10 10 C 1.39898 * 120.00214 * 24.77527 * 8 7 6 11 11 N 1.30897 * 119.99816 * 17.72019 * 10 8 7 12 12 Si 1.86798 * 120.00299 * 197.72618 * 10 8 7 13 13 H 1.48499 * 109.47467 * 89.99419 * 12 10 8 14 14 H 1.48502 * 109.47227 * 210.00136 * 12 10 8 15 15 H 1.48508 * 109.46969 * 329.99775 * 12 10 8 16 16 C 1.38275 * 119.99112 * 180.24695 * 2 1 3 17 17 O 1.35654 * 120.24418 * 0.02802 * 16 2 1 18 18 C 1.42898 * 116.99934 * 270.26710 * 17 16 2 19 19 F 1.39902 * 109.47170 * 300.00462 * 18 17 16 20 20 F 1.39908 * 109.46957 * 59.99809 * 18 17 16 21 21 H 1.08996 * 109.47018 * 90.00384 * 1 2 3 22 22 H 1.09002 * 109.47069 * 210.00171 * 1 2 3 23 23 H 1.09001 * 109.47472 * 330.00010 * 1 2 3 24 24 H 1.07993 * 119.75069 * 180.29367 * 5 3 2 25 25 H 1.07999 * 120.02390 * 180.02562 * 6 5 3 26 26 H 0.97002 * 120.00117 * 180.02562 * 11 10 8 27 27 H 1.08995 * 109.47333 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.2009 0.0000 4 9 1.5186 2.3676 -0.0005 5 6 3.5906 1.2142 0.0063 6 6 4.2944 0.0452 0.0068 7 6 3.6122 -1.1857 0.0016 8 6 4.3334 -2.3984 0.0027 9 1 3.8813 -3.2959 -0.3930 10 6 5.6341 -2.4382 0.5161 11 7 6.0592 -1.4774 1.2968 12 14 6.7642 -3.8625 0.0876 13 1 7.5267 -3.5362 -1.1442 14 1 7.7104 -4.0980 1.2077 15 1 5.9539 -5.0858 -0.1413 16 6 2.1982 -1.1976 -0.0052 17 8 1.5247 -2.3751 -0.0108 18 6 1.1970 -2.9411 1.2597 19 9 2.3720 -3.1834 1.9794 20 9 0.3888 -2.0492 1.9730 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 4.1175 2.1569 0.0110 25 1 5.3742 0.0644 0.0121 26 1 6.9612 -1.5048 1.6526 27 1 0.6608 -3.8786 1.1125 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575661089.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:24 Heat of formation + Delta-G solvation = -185.801434 kcal Electronic energy + Delta-G solvation = -18360.848323 eV Core-core repulsion = 14861.295820 eV Total energy + Delta-G solvation = -3499.552504 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.19344 -47.52812 -46.30143 -38.50607 -35.87821 -33.95849 -31.32577 -29.41231 -26.24357 -25.19133 -24.51727 -20.95497 -20.53429 -17.87785 -17.26513 -17.20373 -16.90130 -15.81656 -15.42666 -14.97609 -14.38474 -14.05356 -13.61953 -13.26296 -12.80748 -12.62036 -12.53662 -12.48142 -12.16027 -12.08961 -11.67720 -11.37921 -11.29322 -11.19911 -10.81096 -10.53625 -10.23356 -9.86316 -9.52392 -9.29032 -7.56737 -7.41180 -6.99962 -4.52998 2.33026 2.55665 2.97695 3.02017 3.04587 3.78464 3.99398 4.34920 4.58232 5.24131 5.49086 5.61809 5.77734 5.87173 5.95988 6.23627 6.32061 6.61595 6.76510 6.78398 6.99103 7.09071 7.38895 7.67410 7.73777 7.98442 8.01770 8.41290 8.58503 8.76298 9.92573 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.022940 B = 0.010859 C = 0.008047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.264467 B = 2577.868038 C = 3478.770617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.073 4.073 3 C -0.045 4.045 4 F -0.168 7.168 5 C -0.118 4.118 6 C -0.138 4.138 7 C 0.109 3.891 8 C -0.422 4.422 9 H 0.088 0.912 10 C 0.074 3.926 11 N -0.777 5.777 12 Si 0.916 3.084 13 H -0.265 1.265 14 H -0.276 1.276 15 H -0.259 1.259 16 C -0.055 4.055 17 O -0.312 6.312 18 C 0.389 3.611 19 F -0.197 7.197 20 F -0.217 7.217 21 H 0.059 0.941 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.104 0.896 25 H 0.131 0.869 26 H 0.286 0.714 27 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.581 -2.906 -0.542 4.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.074 4.074 3 C -0.065 4.065 4 F -0.148 7.148 5 C -0.137 4.137 6 C -0.157 4.157 7 C 0.105 3.895 8 C -0.449 4.449 9 H 0.106 0.894 10 C -0.147 4.147 11 N -0.400 5.400 12 Si 0.739 3.261 13 H -0.190 1.190 14 H -0.201 1.201 15 H -0.182 1.182 16 C -0.099 4.099 17 O -0.231 6.231 18 C 0.300 3.700 19 F -0.179 7.179 20 F -0.199 7.199 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.074 0.926 24 H 0.122 0.878 25 H 0.149 0.851 26 H 0.097 0.903 27 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.442 -2.887 -0.496 4.520 hybrid contribution 0.552 -0.229 0.329 0.683 sum -2.890 -3.116 -0.167 4.253 Atomic orbital electron populations 1.20697 0.92236 1.02487 1.01336 1.19508 0.95178 0.91738 1.00959 1.16822 0.89445 0.79726 1.20509 1.91273 1.80564 1.47140 1.95805 1.20508 0.91766 0.98725 1.02735 1.20873 1.00112 0.90347 1.04389 1.17791 0.89598 0.94017 0.88098 1.19571 0.96935 0.96183 1.32226 0.89413 1.26053 0.98627 0.97587 0.92400 1.69836 1.18390 1.31430 1.20342 0.86170 0.79507 0.81248 0.79128 1.18972 1.20074 1.18240 1.17853 0.89862 0.81957 1.20223 1.86567 1.74125 1.37337 1.25042 1.23604 0.78202 0.90100 0.78138 1.93113 1.50795 1.94462 1.79497 1.92956 1.73863 1.72708 1.80395 0.92242 0.91003 0.92593 0.87759 0.85094 0.90270 0.83521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.21 9.43 36.01 0.34 -1.87 15 2 C -0.07 -1.71 5.74 -104.46 -0.60 -2.31 15 3 C -0.05 -1.08 7.26 -39.12 -0.28 -1.37 15 4 F -0.17 -3.84 16.45 2.25 0.04 -3.81 15 5 C -0.12 -2.79 9.95 -39.91 -0.40 -3.19 15 6 C -0.14 -3.46 8.64 -39.29 -0.34 -3.80 15 7 C 0.11 2.81 5.46 -106.67 -0.58 2.23 15 8 C -0.42 -10.61 7.44 -37.88 -0.28 -10.90 15 9 H 0.09 2.17 7.65 -52.49 -0.40 1.77 15 10 C 0.07 1.75 5.14 -17.33 -0.09 1.66 15 11 N -0.78 -18.92 10.97 55.55 0.61 -18.31 15 12 Si 0.92 17.72 29.59 -169.99 -5.03 12.69 15 13 H -0.26 -5.03 7.11 56.52 0.40 -4.63 15 14 H -0.28 -5.23 7.11 56.52 0.40 -4.83 15 15 H -0.26 -4.98 7.11 56.52 0.40 -4.57 15 16 C -0.05 -1.34 5.34 -38.36 -0.20 -1.55 15 17 O -0.31 -6.87 8.91 -18.66 -0.17 -7.04 15 18 C 0.39 7.37 6.30 101.05 0.64 8.01 15 19 F -0.20 -4.34 15.83 2.25 0.04 -4.30 15 20 F -0.22 -4.25 14.52 2.25 0.03 -4.22 15 21 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 22 H 0.07 1.37 5.04 -51.93 -0.26 1.11 15 23 H 0.06 1.06 7.63 -51.93 -0.40 0.67 15 24 H 0.10 2.20 8.06 -52.49 -0.42 1.78 15 25 H 0.13 3.28 6.17 -52.49 -0.32 2.96 15 26 H 0.29 6.29 8.30 -40.82 -0.34 5.95 15 27 H 0.15 1.96 8.14 -51.93 -0.42 1.53 15 LS Contribution 247.40 15.07 3.73 3.73 Total: -1.00 -27.61 247.40 -4.34 -31.95 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -1.79 Total: 2.39 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -1.80 Total: -13.08 kcal Atomic # 7 Polarization: -18.92 SS G_CDS: 0.61 Total: -18.31 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.17 Total: -7.04 kcal Atomic # 9 Polarization: -12.43 SS G_CDS: 0.11 Total: -12.33 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -27.61 -4.34 -31.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661089.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.847 kcal (2) G-P(sol) polarization free energy of solvation -27.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds