Wall clock time and date at job start Mon Mar 30 2020 06:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38650 * 119.98420 * 2 1 4 4 F 1.35103 * 119.73385 * 359.97339 * 3 2 1 5 5 C 1.39077 * 120.53062 * 179.70042 * 3 2 1 6 6 C 1.36452 * 120.50037 * 0.27690 * 5 3 2 7 7 C 1.40729 * 119.95533 * 359.97438 * 6 5 3 8 8 C 1.41092 * 120.26179 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00335 * 204.78009 * 8 7 6 10 10 C 1.39898 * 120.00214 * 24.77527 * 8 7 6 11 11 N 1.30897 * 119.99816 * 17.72019 * 10 8 7 12 12 Si 1.86798 * 120.00299 * 197.72618 * 10 8 7 13 13 H 1.48499 * 109.47467 * 89.99419 * 12 10 8 14 14 H 1.48502 * 109.47227 * 210.00136 * 12 10 8 15 15 H 1.48508 * 109.46969 * 329.99775 * 12 10 8 16 16 C 1.38275 * 119.99112 * 180.24695 * 2 1 3 17 17 O 1.35654 * 120.24418 * 0.02802 * 16 2 1 18 18 C 1.42898 * 116.99934 * 270.26710 * 17 16 2 19 19 F 1.39902 * 109.47170 * 300.00462 * 18 17 16 20 20 F 1.39908 * 109.46957 * 59.99809 * 18 17 16 21 21 H 1.08996 * 109.47018 * 90.00384 * 1 2 3 22 22 H 1.09002 * 109.47069 * 210.00171 * 1 2 3 23 23 H 1.09001 * 109.47472 * 330.00010 * 1 2 3 24 24 H 1.07993 * 119.75069 * 180.29367 * 5 3 2 25 25 H 1.07999 * 120.02390 * 180.02562 * 6 5 3 26 26 H 0.97002 * 120.00117 * 180.02562 * 11 10 8 27 27 H 1.08995 * 109.47333 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.2009 0.0000 4 9 1.5186 2.3676 -0.0005 5 6 3.5906 1.2142 0.0063 6 6 4.2944 0.0452 0.0068 7 6 3.6122 -1.1857 0.0016 8 6 4.3334 -2.3984 0.0027 9 1 3.8813 -3.2959 -0.3930 10 6 5.6341 -2.4382 0.5161 11 7 6.0592 -1.4774 1.2968 12 14 6.7642 -3.8625 0.0876 13 1 7.5267 -3.5362 -1.1442 14 1 7.7104 -4.0980 1.2077 15 1 5.9539 -5.0858 -0.1413 16 6 2.1982 -1.1976 -0.0052 17 8 1.5247 -2.3751 -0.0108 18 6 1.1970 -2.9411 1.2597 19 9 2.3720 -3.1834 1.9794 20 9 0.3888 -2.0492 1.9730 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 4.1175 2.1569 0.0110 25 1 5.3742 0.0644 0.0121 26 1 6.9612 -1.5048 1.6526 27 1 0.6608 -3.8786 1.1125 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575661089.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:24 Heat of formation + Delta-G solvation = -200.850493 kcal Electronic energy + Delta-G solvation = -18361.500900 eV Core-core repulsion = 14861.295820 eV Total energy + Delta-G solvation = -3500.205080 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.76691 -49.35764 -47.90478 -40.28817 -37.64010 -35.76028 -33.08252 -31.25346 -27.94045 -26.98049 -26.16336 -22.76031 -22.34806 -19.59140 -19.04587 -18.80075 -18.53490 -17.55127 -17.17755 -16.74866 -16.20261 -15.76690 -15.30858 -14.88589 -14.42328 -14.34886 -14.25100 -14.22939 -13.91095 -13.73139 -13.39100 -12.94674 -12.86496 -12.80399 -12.53891 -12.15532 -12.03303 -11.64582 -11.30365 -11.05875 -9.40511 -9.27751 -8.77605 -6.41380 0.52676 0.72712 1.39708 1.48996 1.53533 2.17651 2.36628 2.68639 2.97485 3.49215 3.92921 3.98409 4.07806 4.15550 4.25076 4.53188 4.78440 4.89017 4.98452 5.05713 5.17636 5.30076 5.56232 5.78950 5.86400 6.14236 6.18263 6.55168 6.73195 6.91793 8.17887 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.022940 B = 0.010859 C = 0.008047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.264467 B = 2577.868038 C = 3478.770617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.083 4.083 3 C -0.062 4.062 4 F -0.163 7.163 5 C -0.120 4.120 6 C -0.159 4.159 7 C 0.080 3.920 8 C -0.443 4.443 9 H 0.084 0.916 10 C 0.037 3.963 11 N -0.805 5.805 12 Si 0.985 3.015 13 H -0.258 1.258 14 H -0.267 1.267 15 H -0.256 1.256 16 C -0.064 4.064 17 O -0.319 6.319 18 C 0.383 3.617 19 F -0.218 7.218 20 F -0.221 7.221 21 H 0.076 0.924 22 H 0.080 0.920 23 H 0.062 0.938 24 H 0.124 0.876 25 H 0.124 0.876 26 H 0.295 0.705 27 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.964 -3.998 -0.670 5.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.084 4.084 3 C -0.082 4.082 4 F -0.143 7.143 5 C -0.139 4.139 6 C -0.178 4.178 7 C 0.077 3.923 8 C -0.470 4.470 9 H 0.102 0.898 10 C -0.181 4.181 11 N -0.429 5.429 12 Si 0.805 3.195 13 H -0.182 1.182 14 H -0.192 1.192 15 H -0.179 1.179 16 C -0.108 4.108 17 O -0.238 6.238 18 C 0.294 3.706 19 F -0.200 7.200 20 F -0.203 7.203 21 H 0.095 0.905 22 H 0.098 0.902 23 H 0.081 0.919 24 H 0.142 0.858 25 H 0.142 0.858 26 H 0.106 0.894 27 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -3.842 -3.961 -0.621 5.553 hybrid contribution 0.596 0.125 0.399 0.728 sum -3.246 -3.837 -0.222 5.031 Atomic orbital electron populations 1.20734 0.89688 1.03214 1.02665 1.19901 0.97236 0.91282 1.00021 1.16984 0.89709 0.80241 1.21219 1.91276 1.80391 1.46762 1.95839 1.20713 0.92065 0.99214 1.01892 1.20857 0.99890 0.90893 1.06205 1.18173 0.90686 0.94649 0.88801 1.19708 0.98173 0.95891 1.33242 0.89764 1.26882 0.99436 1.00179 0.91631 1.69866 1.19227 1.33047 1.20726 0.85135 0.77398 0.77795 0.79134 1.18233 1.19189 1.17943 1.18015 0.89797 0.83134 1.19902 1.86482 1.73713 1.36516 1.27111 1.24492 0.77813 0.91759 0.76518 1.93072 1.52433 1.94543 1.79924 1.92942 1.73688 1.73290 1.80422 0.90507 0.90184 0.91907 0.85781 0.85842 0.89364 0.77051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.04 9.43 71.24 0.67 -3.37 15 2 C -0.08 -3.86 5.74 -19.76 -0.11 -3.97 15 3 C -0.06 -2.93 7.26 22.57 0.16 -2.77 15 4 F -0.16 -7.29 16.45 44.97 0.74 -6.55 15 5 C -0.12 -5.70 9.95 22.05 0.22 -5.48 15 6 C -0.16 -8.13 8.64 22.46 0.19 -7.94 15 7 C 0.08 4.21 5.46 -21.19 -0.12 4.10 15 8 C -0.44 -22.44 7.44 23.37 0.17 -22.27 15 9 H 0.08 4.18 7.65 -2.91 -0.02 4.16 15 10 C 0.04 1.73 5.14 85.23 0.44 2.17 15 11 N -0.80 -39.44 10.97 21.82 0.24 -39.20 15 12 Si 0.99 35.67 29.59 68.60 2.03 37.70 15 13 H -0.26 -8.99 7.11 99.48 0.71 -8.29 15 14 H -0.27 -9.24 7.11 99.48 0.71 -8.54 15 15 H -0.26 -9.06 7.11 99.48 0.71 -8.36 15 16 C -0.06 -3.13 5.34 23.06 0.12 -3.01 15 17 O -0.32 -13.67 8.91 -89.69 -0.80 -14.47 15 18 C 0.38 13.70 6.30 113.37 0.71 14.41 15 19 F -0.22 -9.41 15.83 44.97 0.71 -8.69 15 20 F -0.22 -8.24 14.52 44.97 0.65 -7.58 15 21 H 0.08 2.63 8.14 -2.39 -0.02 2.61 15 22 H 0.08 2.87 5.04 -2.39 -0.01 2.86 15 23 H 0.06 2.26 7.63 -2.39 -0.02 2.25 15 24 H 0.12 5.22 8.06 -2.91 -0.02 5.19 15 25 H 0.12 6.37 6.17 -2.91 -0.02 6.35 15 26 H 0.30 12.95 8.30 -92.71 -0.77 12.18 15 27 H 0.21 4.77 8.14 -2.39 -0.02 4.75 15 Total: -1.00 -59.01 247.40 7.26 -51.75 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 1.22 Total: 15.18 kcal Atomic # 6 Polarization: -30.60 SS G_CDS: 2.47 Total: -28.13 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.24 Total: -39.20 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.80 Total: -14.47 kcal Atomic # 9 Polarization: -24.93 SS G_CDS: 2.10 Total: -22.83 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 2.03 Total: 37.70 kcal Total: -59.01 7.26 -51.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661089.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.100 kcal (2) G-P(sol) polarization free energy of solvation -59.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds