Wall clock time and date at job start Mon Mar 30 2020 06:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36383 * 120.02176 * 2 1 4 4 C 1.39343 * 120.37852 * 179.97438 * 3 2 1 5 5 O 1.35682 * 119.79481 * 180.02562 * 4 3 2 6 6 C 1.42905 * 117.00179 * 179.97438 * 5 4 3 7 7 F 1.39901 * 109.46897 * 300.00070 * 6 5 4 8 8 F 1.39900 * 109.47070 * 59.99653 * 6 5 4 9 9 C 1.39190 * 120.41034 * 0.02562 * 4 3 2 10 10 C 1.37715 * 120.02767 * 359.71519 * 9 4 3 11 11 F 1.35098 * 120.18408 * 180.27713 * 10 9 4 12 12 C 1.40786 * 120.02516 * 179.97438 * 2 1 3 13 13 C 1.41138 * 120.20031 * 0.02562 * 12 2 1 14 14 H 1.07996 * 119.99596 * 323.63481 * 13 12 2 15 15 C 1.39871 * 120.00198 * 143.91099 * 13 12 2 16 16 N 1.30910 * 120.00128 * 339.57234 * 15 13 12 17 17 Si 1.86797 * 120.00084 * 159.56600 * 15 13 12 18 18 H 1.48507 * 109.47026 * 90.00307 * 17 15 13 19 19 H 1.48494 * 109.47420 * 210.00229 * 17 15 13 20 20 H 1.48504 * 109.47490 * 330.00405 * 17 15 13 21 21 H 1.09000 * 109.46949 * 270.01792 * 1 2 3 22 22 H 1.08997 * 109.47422 * 30.02290 * 1 2 3 23 23 H 1.09003 * 109.46638 * 150.01992 * 1 2 3 24 24 H 1.08007 * 119.80832 * 0.02562 * 3 2 1 25 25 H 1.08999 * 109.47302 * 179.97438 * 6 5 4 26 26 H 1.07992 * 119.99091 * 179.97438 * 9 4 3 27 27 H 0.97002 * 120.00298 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1894 1.1809 0.0000 4 6 3.5828 1.1895 0.0005 5 8 4.2496 2.3712 0.0011 6 6 5.6774 2.3104 0.0022 7 9 6.1143 1.6317 1.1448 8 9 6.1161 1.6316 -1.1397 9 6 4.2948 -0.0065 0.0005 10 6 3.6229 -1.2085 0.0059 11 9 4.3108 -2.3712 0.0116 12 6 2.2115 -1.2189 0.0005 13 6 1.5106 -2.4440 0.0005 14 1 0.5885 -2.5385 0.5548 15 6 2.0132 -3.5373 -0.7125 16 7 2.8758 -3.3479 -1.6788 17 14 1.4536 -5.2677 -0.2859 18 1 0.2533 -5.6120 -1.0896 19 1 2.5441 -6.2292 -0.5881 20 1 1.1185 -5.3375 1.1591 21 1 -0.3633 0.0003 1.0277 22 1 -0.3634 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5136 24 1 1.6466 2.1146 0.0004 25 1 6.0841 3.3217 0.0020 26 1 5.3746 0.0082 0.0005 27 1 3.2247 -4.1062 -2.1731 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575661123.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:31 Heat of formation + Delta-G solvation = -194.507162 kcal Electronic energy + Delta-G solvation = -18051.604010 eV Core-core repulsion = 14551.673998 eV Total energy + Delta-G solvation = -3499.930012 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.18331 -49.08045 -48.20153 -40.40887 -38.28775 -35.31012 -32.94836 -31.28182 -28.40202 -27.10730 -25.98925 -23.10369 -22.16491 -19.47996 -19.36881 -19.04056 -18.75129 -17.16494 -17.12801 -16.43812 -16.00544 -15.88668 -15.65177 -15.22031 -14.72533 -14.53026 -14.49714 -14.11500 -13.96890 -13.80639 -13.43467 -13.31813 -12.92265 -12.89208 -12.44874 -12.35265 -11.93555 -11.64139 -11.42964 -10.86734 -9.36728 -9.02054 -8.66822 -6.35040 0.65870 0.77535 1.37044 1.44250 1.52349 1.95419 2.20507 2.62995 2.70555 3.35839 3.65064 3.82392 3.95376 4.04658 4.38576 4.54255 4.74515 4.93271 5.06195 5.19175 5.23768 5.35369 5.48430 5.66475 5.86387 6.07521 6.23657 6.44819 6.84138 6.88609 8.33048 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.031317 B = 0.008194 C = 0.006965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.864624 B = 3416.246886 C = 4018.968303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.141 4.141 3 C -0.112 4.112 4 C 0.007 3.993 5 O -0.325 6.325 6 C 0.401 3.599 7 F -0.218 7.218 8 F -0.221 7.221 9 C -0.209 4.209 10 C 0.024 3.976 11 F -0.155 7.155 12 C 0.041 3.959 13 C -0.490 4.490 14 H 0.093 0.907 15 C 0.034 3.966 16 N -0.821 5.821 17 Si 0.976 3.024 18 H -0.255 1.255 19 H -0.277 1.277 20 H -0.257 1.257 21 H 0.068 0.932 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.143 0.857 25 H 0.240 0.760 26 H 0.116 0.884 27 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.002 8.121 2.313 8.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C -0.130 4.130 4 C -0.035 4.035 5 O -0.243 6.243 6 C 0.311 3.689 7 F -0.200 7.200 8 F -0.203 7.203 9 C -0.229 4.229 10 C 0.004 3.996 11 F -0.134 7.134 12 C 0.038 3.962 13 C -0.519 4.519 14 H 0.111 0.889 15 C -0.182 4.182 16 N -0.446 5.446 17 Si 0.797 3.203 18 H -0.180 1.180 19 H -0.202 1.202 20 H -0.180 1.180 21 H 0.087 0.913 22 H 0.093 0.907 23 H 0.076 0.924 24 H 0.161 0.839 25 H 0.255 0.745 26 H 0.134 0.866 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.096 8.114 2.122 8.458 hybrid contribution 0.767 -1.484 -0.114 1.675 sum 1.862 6.629 2.008 7.173 Atomic orbital electron populations 1.20464 0.89230 1.02268 1.01799 1.19740 0.97226 0.90782 1.06550 1.19916 0.89807 0.98644 1.04667 1.18175 0.91890 0.82374 1.11105 1.86369 1.18816 1.29319 1.89826 1.24310 0.79041 0.94857 0.70657 1.93038 1.89592 1.84346 1.53070 1.93046 1.89561 1.84374 1.53275 1.21038 0.99258 0.92154 1.10425 1.17904 0.90736 0.80057 1.10931 1.91269 1.79606 1.48269 1.94218 1.17878 0.89783 0.94978 0.93520 1.19515 1.09238 0.94923 1.28211 0.88875 1.26696 0.93558 1.05281 0.92618 1.69872 1.24602 1.35232 1.14912 0.85280 0.78743 0.76105 0.80153 1.17951 1.20169 1.18028 0.91334 0.90748 0.92398 0.83916 0.74475 0.86618 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.98 9.44 71.24 0.67 -2.31 15 2 C -0.14 -6.48 5.90 -19.67 -0.12 -6.60 15 3 C -0.11 -4.72 9.55 22.10 0.21 -4.51 15 4 C 0.01 0.33 6.51 22.76 0.15 0.48 15 5 O -0.32 -11.55 10.42 -90.00 -0.94 -12.49 15 6 C 0.40 11.33 5.98 113.37 0.68 12.00 15 7 F -0.22 -7.21 15.56 44.97 0.70 -6.51 15 8 F -0.22 -7.55 15.56 44.97 0.70 -6.85 15 9 C -0.21 -10.41 8.20 22.37 0.18 -10.22 15 10 C 0.02 1.36 6.68 22.86 0.15 1.51 15 11 F -0.15 -9.08 14.26 44.97 0.64 -8.44 15 12 C 0.04 2.23 5.40 -21.23 -0.11 2.11 15 13 C -0.49 -26.06 7.71 23.38 0.18 -25.88 15 14 H 0.09 4.61 7.36 -2.91 -0.02 4.59 15 15 C 0.03 1.79 4.49 85.23 0.38 2.17 15 16 N -0.82 -45.65 11.13 21.82 0.24 -45.40 15 17 Si 0.98 39.69 29.60 68.60 2.03 41.72 15 18 H -0.26 -9.66 7.11 99.48 0.71 -8.95 15 19 H -0.28 -11.13 7.11 99.48 0.71 -10.43 15 20 H -0.26 -10.14 7.11 99.48 0.71 -9.43 15 21 H 0.07 2.25 8.14 -2.39 -0.02 2.23 15 22 H 0.07 2.27 8.08 -2.39 -0.02 2.25 15 23 H 0.06 2.26 6.95 -2.39 -0.02 2.24 15 24 H 0.14 4.94 8.06 -2.91 -0.02 4.92 15 25 H 0.24 3.20 8.14 -2.39 -0.02 3.18 15 26 H 0.12 5.56 5.06 -2.91 -0.01 5.54 15 27 H 0.29 14.66 8.30 -92.71 -0.77 13.89 15 Total: -1.00 -66.13 247.80 6.97 -59.16 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 1.22 Total: 10.05 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 2.38 Total: -31.23 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.24 Total: -45.40 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.94 Total: -12.49 kcal Atomic # 9 Polarization: -23.84 SS G_CDS: 2.04 Total: -21.80 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -66.13 6.97 -59.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661123.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.350 kcal (2) G-P(sol) polarization free energy of solvation -66.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds