Wall clock time and date at job start Mon Mar 30 2020 06:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38451 * 119.86328 * 2 1 4 4 C 1.39192 * 120.48326 * 179.75831 * 3 2 1 5 5 O 1.35932 * 119.89588 * 180.23458 * 4 3 2 6 6 C 1.42895 * 117.00217 * 180.27861 * 5 4 3 7 7 F 1.39905 * 109.47163 * 300.00135 * 6 5 4 8 8 F 1.39896 * 109.47212 * 59.99837 * 6 5 4 9 9 C 1.38031 * 120.20538 * 0.51986 * 4 3 2 10 10 C 1.40632 * 119.72827 * 359.73990 * 9 4 3 11 11 C 1.41287 * 120.23910 * 180.02562 * 10 9 4 12 12 H 1.07993 * 120.00412 * 154.51875 * 11 10 9 13 13 C 1.39936 * 119.99666 * 334.51725 * 11 10 9 14 14 N 1.30850 * 119.99908 * 343.02906 * 13 11 10 15 15 Si 1.86800 * 119.99836 * 163.02587 * 13 11 10 16 16 H 1.48503 * 109.46747 * 90.00376 * 15 13 11 17 17 H 1.48500 * 109.46918 * 209.99824 * 15 13 11 18 18 H 1.48496 * 109.47336 * 329.99965 * 15 13 11 19 19 C 1.37945 * 119.86556 * 180.27130 * 2 1 3 20 20 F 1.35097 * 120.11051 * 0.02562 * 19 2 1 21 21 H 1.09001 * 109.47435 * 269.72388 * 1 2 3 22 22 H 1.09000 * 109.47032 * 149.72190 * 1 2 3 23 23 H 1.09004 * 109.47135 * 29.72862 * 1 2 3 24 24 H 1.07997 * 119.75878 * 359.97438 * 3 2 1 25 25 H 1.09000 * 109.47287 * 180.02562 * 6 5 4 26 26 H 1.08000 * 120.13389 * 179.76662 * 9 4 3 27 27 H 0.96999 * 120.00045 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2007 0.0000 4 6 3.5882 1.2157 0.0051 5 8 4.2529 2.4014 0.0098 6 6 5.6808 2.3448 0.0087 7 9 6.1213 1.6623 1.1477 8 9 6.1199 1.6723 -1.1368 9 6 4.2956 0.0304 -0.0007 10 6 3.6042 -1.1942 -0.0061 11 6 4.3174 -2.4139 -0.0115 12 1 3.8612 -3.3080 0.3869 13 6 5.6150 -2.4633 -0.5331 14 7 6.0473 -1.4986 -1.3043 15 14 6.7300 -3.9063 -0.1282 16 1 6.5476 -4.9732 -1.1450 17 1 8.1448 -3.4551 -0.1326 18 1 6.3840 -4.4377 1.2145 19 6 2.1939 -1.1962 -0.0057 20 9 1.5180 -2.3659 -0.0117 21 1 -0.3634 -0.0050 1.0276 22 1 -0.3633 -0.8875 -0.5181 23 1 -0.3633 0.8924 -0.5096 24 1 1.6503 2.1324 -0.0004 25 1 6.0846 3.3572 0.0133 26 1 5.3755 0.0435 -0.0006 27 1 6.9468 -1.5327 -1.6655 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575661148.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:58 Heat of formation + Delta-G solvation = -202.990045 kcal Electronic energy + Delta-G solvation = -18184.954331 eV Core-core repulsion = 14684.656473 eV Total energy + Delta-G solvation = -3500.297858 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.05327 -49.20137 -48.07674 -40.37784 -38.07010 -35.91890 -32.90378 -31.02930 -27.73412 -27.44043 -26.49349 -22.95887 -22.31706 -19.66986 -19.14034 -18.63832 -18.45761 -17.93179 -16.96955 -16.72273 -16.13597 -15.95724 -15.20180 -14.80211 -14.65030 -14.40378 -14.37984 -14.26090 -13.91363 -13.83865 -13.52107 -13.42672 -13.12615 -12.84109 -12.52096 -12.36537 -12.00613 -11.77170 -11.36209 -11.03921 -9.48384 -8.94508 -8.68064 -6.51346 0.71701 0.77359 1.33414 1.42697 1.49610 1.92372 2.14859 2.54212 2.79762 3.37687 3.71062 3.89720 3.98726 4.18910 4.49957 4.51756 4.73721 4.84747 4.88275 5.08236 5.11938 5.29515 5.58016 5.71144 5.89681 5.99191 6.16664 6.48502 6.70359 6.81457 8.19728 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.016235 B = 0.013386 C = 0.007859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.292586 B = 2091.310207 C = 3562.068988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.064 4.064 3 C -0.234 4.234 4 C 0.104 3.896 5 O -0.333 6.333 6 C 0.400 3.600 7 F -0.219 7.219 8 F -0.208 7.208 9 C -0.247 4.247 10 C 0.079 3.921 11 C -0.489 4.489 12 H 0.075 0.925 13 C 0.036 3.964 14 N -0.799 5.799 15 Si 0.984 3.016 16 H -0.259 1.259 17 H -0.259 1.259 18 H -0.260 1.260 19 C -0.079 4.079 20 F -0.165 7.165 21 H 0.080 0.920 22 H 0.059 0.941 23 H 0.088 0.912 24 H 0.141 0.859 25 H 0.237 0.763 26 H 0.139 0.861 27 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.548 6.730 1.619 6.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.065 4.065 3 C -0.254 4.254 4 C 0.061 3.939 5 O -0.251 6.251 6 C 0.311 3.689 7 F -0.201 7.201 8 F -0.190 7.190 9 C -0.267 4.267 10 C 0.076 3.924 11 C -0.517 4.517 12 H 0.093 0.907 13 C -0.182 4.182 14 N -0.423 5.423 15 Si 0.803 3.197 16 H -0.183 1.183 17 H -0.183 1.183 18 H -0.184 1.184 19 C -0.099 4.099 20 F -0.145 7.145 21 H 0.099 0.901 22 H 0.078 0.922 23 H 0.107 0.893 24 H 0.158 0.842 25 H 0.253 0.747 26 H 0.156 0.844 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.663 6.923 1.457 7.105 hybrid contribution 0.713 -1.223 -0.006 1.416 sum 1.376 5.699 1.451 6.040 Atomic orbital electron populations 1.20657 0.88588 1.03193 1.03033 1.19606 0.97366 0.90471 0.99106 1.19704 0.89669 0.97476 1.18513 1.18925 0.92428 0.83378 0.99136 1.86418 1.19487 1.30211 1.88970 1.24258 0.78712 0.94806 0.71132 1.93033 1.89428 1.84253 1.53408 1.93113 1.89286 1.84369 1.52253 1.21601 1.00913 0.90525 1.13652 1.17758 0.90037 0.94730 0.89910 1.19691 0.99848 0.95651 1.36481 0.90723 1.26806 0.98978 1.00587 0.91788 1.69862 1.18821 1.32719 1.20864 0.85181 0.77061 0.77431 0.80000 1.18333 1.18337 1.18378 1.17980 0.90118 0.80797 1.21015 1.91214 1.80033 1.47648 1.95572 0.90099 0.92216 0.89313 0.84158 0.74743 0.84386 0.89657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.31 9.83 71.24 0.70 -2.61 15 2 C -0.06 -2.89 5.88 -19.88 -0.12 -3.01 15 3 C -0.23 -10.23 9.63 22.55 0.22 -10.02 15 4 C 0.10 4.94 6.48 22.45 0.15 5.08 15 5 O -0.33 -13.07 10.43 -92.78 -0.97 -14.04 15 6 C 0.40 13.25 5.98 113.37 0.68 13.93 15 7 F -0.22 -8.42 15.57 44.97 0.70 -7.72 15 8 F -0.21 -8.40 15.57 44.97 0.70 -7.70 15 9 C -0.25 -13.23 6.88 22.81 0.16 -13.07 15 10 C 0.08 4.50 5.57 -21.26 -0.12 4.38 15 11 C -0.49 -27.67 8.77 23.43 0.21 -27.47 15 12 H 0.07 4.20 7.74 -2.91 -0.02 4.17 15 13 C 0.04 1.86 5.15 85.25 0.44 2.30 15 14 N -0.80 -41.99 10.97 21.83 0.24 -41.75 15 15 Si 0.98 39.01 29.59 68.60 2.03 41.04 15 16 H -0.26 -9.84 7.11 99.48 0.71 -9.13 15 17 H -0.26 -9.58 7.11 99.48 0.71 -8.87 15 18 H -0.26 -10.25 7.11 99.48 0.71 -9.54 15 19 C -0.08 -4.18 7.24 22.89 0.17 -4.01 15 20 F -0.17 -8.62 15.91 44.97 0.72 -7.90 15 21 H 0.08 2.42 8.14 -2.39 -0.02 2.40 15 22 H 0.06 2.02 7.62 -2.39 -0.02 2.00 15 23 H 0.09 2.46 8.08 -2.39 -0.02 2.44 15 24 H 0.14 5.13 8.06 -2.91 -0.02 5.10 15 25 H 0.24 4.17 8.14 -2.39 -0.02 4.15 15 26 H 0.14 7.48 3.21 -2.91 -0.01 7.48 15 27 H 0.29 13.87 8.30 -92.71 -0.77 13.10 15 Total: -1.00 -66.36 250.08 7.11 -59.25 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 1.22 Total: 13.32 kcal Atomic # 6 Polarization: -36.97 SS G_CDS: 2.47 Total: -34.49 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.24 Total: -41.75 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.97 Total: -14.04 kcal Atomic # 9 Polarization: -25.43 SS G_CDS: 2.12 Total: -23.32 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Total: -66.36 7.11 -59.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661148.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.744 kcal (2) G-P(sol) polarization free energy of solvation -66.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds