Wall clock time and date at job start Mon Mar 30 2020 06:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38318 * 119.71293 * 2 1 4 4 C 1.38359 * 120.20226 * 179.97438 * 3 2 1 5 5 O 1.35666 * 120.18560 * 180.02562 * 4 3 2 6 6 C 1.42905 * 117.00083 * 359.97438 * 5 4 3 7 7 F 1.39907 * 109.46826 * 60.00108 * 6 5 4 8 8 F 1.39905 * 109.47088 * 300.00455 * 6 5 4 9 9 C 1.41341 * 119.63324 * 0.29939 * 4 3 2 10 10 C 1.41149 * 120.27057 * 179.72354 * 9 4 3 11 11 H 1.07996 * 120.00455 * 24.54200 * 10 9 4 12 12 C 1.39934 * 119.99678 * 204.54121 * 10 9 4 13 13 N 1.30865 * 119.99789 * 17.61502 * 12 10 9 14 14 Si 1.86793 * 119.99815 * 197.60839 * 12 10 9 15 15 H 1.48501 * 109.47437 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47099 * 120.00476 * 14 12 10 17 17 H 1.48504 * 109.47469 * 240.00257 * 14 12 10 18 18 C 1.40687 * 119.45326 * 359.47688 * 9 4 3 19 19 C 1.37703 * 119.78583 * 0.49968 * 18 9 4 20 20 F 1.35104 * 119.82227 * 179.72267 * 19 18 9 21 21 H 1.08999 * 109.47295 * 89.99921 * 1 2 3 22 22 H 1.09003 * 109.47014 * 209.99355 * 1 2 3 23 23 H 1.09003 * 109.47432 * 329.99470 * 1 2 3 24 24 H 1.08006 * 119.90095 * 0.02562 * 3 2 1 25 25 H 1.08994 * 109.47439 * 180.02562 * 6 5 4 26 26 H 0.97009 * 119.99988 * 179.97438 * 13 12 10 27 27 H 1.08003 * 120.10960 * 180.22855 * 18 9 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1926 1.2013 0.0000 4 6 3.5761 1.2131 0.0005 5 8 4.2482 2.3916 0.0011 6 6 3.4636 3.5860 0.0005 7 9 2.6555 3.6136 1.1422 8 9 2.6571 3.6136 -1.1424 9 6 4.2854 -0.0094 -0.0053 10 6 5.6969 -0.0130 -0.0108 11 1 6.2407 0.8353 0.3778 12 6 6.3918 -1.1159 -0.5196 13 7 5.7782 -1.9766 -1.2912 14 14 8.1951 -1.3594 -0.0978 15 1 8.6504 -0.2555 0.7850 16 1 8.3686 -2.6570 0.6034 17 1 8.9998 -1.3598 -1.3458 18 6 3.5731 -1.2225 -0.0005 19 6 2.1961 -1.2072 -0.0005 20 9 1.5113 -2.3718 -0.0015 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8901 0.5137 23 1 -0.3634 0.8899 0.5139 24 1 1.6463 2.1330 0.0004 25 1 4.1229 4.4539 0.0005 26 1 6.2599 -2.7410 -1.6443 27 1 4.1044 -2.1629 -0.0012 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575661301.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:00 Heat of formation + Delta-G solvation = -185.108796 kcal Electronic energy + Delta-G solvation = -17960.392562 eV Core-core repulsion = 14460.870093 eV Total energy + Delta-G solvation = -3499.522469 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.75029 -47.68117 -46.75603 -38.61094 -36.17210 -34.09510 -31.15934 -28.60342 -27.63512 -25.50680 -23.82100 -21.49256 -20.52013 -17.99596 -17.73397 -17.29578 -17.21958 -15.75714 -15.36130 -14.64890 -14.48988 -14.46652 -13.75717 -13.18293 -13.04127 -12.97552 -12.89786 -12.54303 -12.41291 -12.38548 -11.90958 -11.67821 -11.52730 -11.13223 -10.87763 -10.63794 -10.31489 -9.98370 -9.62772 -9.25456 -7.63827 -7.15143 -6.86782 -4.48163 2.50012 2.63580 3.01481 3.04653 3.08494 3.49536 3.83439 4.09694 4.36660 4.88950 5.14767 5.39678 5.57189 5.91543 5.97776 6.08965 6.32224 6.46933 6.62116 6.86147 6.96506 7.11689 7.35268 7.48176 7.63592 7.96318 8.06301 8.42462 8.61386 8.72821 10.01467 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.018879 B = 0.010330 C = 0.007097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.788942 B = 2709.999433 C = 3944.616728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.224 4.224 3 C -0.126 4.126 4 C -0.024 4.024 5 O -0.306 6.306 6 C 0.406 3.594 7 F -0.210 7.210 8 F -0.209 7.209 9 C 0.128 3.872 10 C -0.439 4.439 11 H 0.089 0.911 12 C 0.072 3.928 13 N -0.784 5.784 14 Si 0.915 3.085 15 H -0.258 1.258 16 H -0.270 1.270 17 H -0.273 1.273 18 C -0.185 4.185 19 C 0.098 3.902 20 F -0.163 7.163 21 H 0.048 0.952 22 H 0.052 0.948 23 H 0.050 0.950 24 H 0.112 0.888 25 H 0.165 0.835 26 H 0.285 0.715 27 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.449 5.974 1.639 6.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.226 4.226 3 C -0.145 4.145 4 C -0.067 4.067 5 O -0.224 6.224 6 C 0.314 3.686 7 F -0.192 7.192 8 F -0.191 7.191 9 C 0.125 3.875 10 C -0.468 4.468 11 H 0.107 0.893 12 C -0.147 4.147 13 N -0.408 5.408 14 Si 0.739 3.261 15 H -0.181 1.181 16 H -0.195 1.195 17 H -0.198 1.198 18 C -0.205 4.205 19 C 0.079 3.921 20 F -0.142 7.142 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.129 0.871 25 H 0.181 0.819 26 H 0.096 0.904 27 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.269 5.735 1.490 6.060 hybrid contribution 0.298 -0.262 0.006 0.396 sum -0.972 5.473 1.497 5.757 Atomic orbital electron populations 1.20326 0.92446 1.00892 1.00456 1.18846 0.94854 0.91329 1.17605 1.20573 0.92130 0.97226 1.04599 1.18949 0.89954 0.84069 1.13717 1.86471 1.34120 1.12188 1.89649 1.23202 0.81639 0.92117 0.71642 1.93043 1.76636 1.96909 1.52656 1.93048 1.76662 1.96899 1.52502 1.16724 0.93434 0.86771 0.90607 1.19522 0.90771 1.02285 1.34199 0.89286 1.26011 1.01535 0.94649 0.92497 1.69835 1.38979 1.10704 1.21283 0.86144 0.81100 0.79494 0.79392 1.18129 1.19528 1.19799 1.21047 0.90154 0.99541 1.09786 1.17468 0.90110 0.79751 1.04789 1.91319 1.80501 1.47845 1.94549 0.93273 0.92928 0.93082 0.87063 0.81873 0.90429 0.84459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.61 9.82 36.01 0.35 -1.25 15 2 C -0.22 -5.20 5.90 -104.31 -0.62 -5.81 15 3 C -0.13 -2.92 7.89 -39.51 -0.31 -3.23 15 4 C -0.02 -0.60 6.52 -38.36 -0.25 -0.85 15 5 O -0.31 -6.62 9.71 -18.70 -0.18 -6.80 15 6 C 0.41 6.66 5.98 101.05 0.60 7.27 15 7 F -0.21 -3.65 15.58 2.25 0.04 -3.61 15 8 F -0.21 -3.71 15.59 2.25 0.04 -3.68 15 9 C 0.13 3.38 5.58 -106.69 -0.60 2.78 15 10 C -0.44 -11.35 8.72 -37.84 -0.33 -11.68 15 11 H 0.09 2.23 7.64 -52.49 -0.40 1.83 15 12 C 0.07 1.76 5.14 -17.33 -0.09 1.67 15 13 N -0.78 -19.73 10.96 55.55 0.61 -19.12 15 14 Si 0.91 18.01 29.59 -169.99 -5.03 12.98 15 15 H -0.26 -5.02 7.11 56.52 0.40 -4.61 15 16 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 17 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 18 C -0.18 -4.86 8.66 -38.85 -0.34 -5.19 15 19 C 0.10 2.43 7.22 -39.49 -0.29 2.15 15 20 F -0.16 -3.86 16.44 2.25 0.04 -3.82 15 21 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 22 H 0.05 0.95 7.62 -51.93 -0.40 0.56 15 23 H 0.05 0.87 8.08 -51.93 -0.42 0.45 15 24 H 0.11 2.37 5.09 -52.48 -0.27 2.10 15 25 H 0.16 1.75 8.14 -51.93 -0.42 1.33 15 26 H 0.28 6.46 8.30 -40.82 -0.34 6.12 15 27 H 0.14 3.69 6.17 -52.48 -0.32 3.37 15 LS Contribution 249.80 15.07 3.76 3.76 Total: -1.00 -28.17 249.80 -4.37 -32.55 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -1.79 Total: 1.89 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -1.86 Total: -14.15 kcal Atomic # 7 Polarization: -19.73 SS G_CDS: 0.61 Total: -19.12 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.18 Total: -6.80 kcal Atomic # 9 Polarization: -11.22 SS G_CDS: 0.11 Total: -11.12 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.17 -4.37 -32.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661301.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.560 kcal (2) G-P(sol) polarization free energy of solvation -28.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds