Wall clock time and date at job start Mon Mar 30 2020 06:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38318 * 119.71293 * 2 1 4 4 C 1.38359 * 120.20226 * 179.97438 * 3 2 1 5 5 O 1.35666 * 120.18560 * 180.02562 * 4 3 2 6 6 C 1.42905 * 117.00083 * 359.97438 * 5 4 3 7 7 F 1.39907 * 109.46826 * 60.00108 * 6 5 4 8 8 F 1.39905 * 109.47088 * 300.00455 * 6 5 4 9 9 C 1.41341 * 119.63324 * 0.29939 * 4 3 2 10 10 C 1.41149 * 120.27057 * 179.72354 * 9 4 3 11 11 H 1.07996 * 120.00455 * 24.54200 * 10 9 4 12 12 C 1.39934 * 119.99678 * 204.54121 * 10 9 4 13 13 N 1.30865 * 119.99789 * 17.61502 * 12 10 9 14 14 Si 1.86793 * 119.99815 * 197.60839 * 12 10 9 15 15 H 1.48501 * 109.47437 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47099 * 120.00476 * 14 12 10 17 17 H 1.48504 * 109.47469 * 240.00257 * 14 12 10 18 18 C 1.40687 * 119.45326 * 359.47688 * 9 4 3 19 19 C 1.37703 * 119.78583 * 0.49968 * 18 9 4 20 20 F 1.35104 * 119.82227 * 179.72267 * 19 18 9 21 21 H 1.08999 * 109.47295 * 89.99921 * 1 2 3 22 22 H 1.09003 * 109.47014 * 209.99355 * 1 2 3 23 23 H 1.09003 * 109.47432 * 329.99470 * 1 2 3 24 24 H 1.08006 * 119.90095 * 0.02562 * 3 2 1 25 25 H 1.08994 * 109.47439 * 180.02562 * 6 5 4 26 26 H 0.97009 * 119.99988 * 179.97438 * 13 12 10 27 27 H 1.08003 * 120.10960 * 180.22855 * 18 9 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1926 1.2013 0.0000 4 6 3.5761 1.2131 0.0005 5 8 4.2482 2.3916 0.0011 6 6 3.4636 3.5860 0.0005 7 9 2.6555 3.6136 1.1422 8 9 2.6571 3.6136 -1.1424 9 6 4.2854 -0.0094 -0.0053 10 6 5.6969 -0.0130 -0.0108 11 1 6.2407 0.8353 0.3778 12 6 6.3918 -1.1159 -0.5196 13 7 5.7782 -1.9766 -1.2912 14 14 8.1951 -1.3594 -0.0978 15 1 8.6504 -0.2555 0.7850 16 1 8.3686 -2.6570 0.6034 17 1 8.9998 -1.3598 -1.3458 18 6 3.5731 -1.2225 -0.0005 19 6 2.1961 -1.2072 -0.0005 20 9 1.5113 -2.3718 -0.0015 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8901 0.5137 23 1 -0.3634 0.8899 0.5139 24 1 1.6463 2.1330 0.0004 25 1 4.1229 4.4539 0.0005 26 1 6.2599 -2.7410 -1.6443 27 1 4.1044 -2.1629 -0.0012 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575661301.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:00 Heat of formation + Delta-G solvation = -201.010866 kcal Electronic energy + Delta-G solvation = -17961.082127 eV Core-core repulsion = 14460.870093 eV Total energy + Delta-G solvation = -3500.212034 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.11136 -49.58821 -48.11874 -40.37377 -37.91450 -35.92406 -32.95783 -30.43951 -29.40152 -26.97520 -25.57422 -23.30782 -22.28808 -19.75325 -19.33925 -18.80801 -18.67869 -17.61639 -17.09382 -16.44280 -16.30765 -16.09165 -15.23785 -14.80528 -14.66065 -14.58898 -14.45508 -14.22527 -14.08295 -13.94307 -13.54429 -13.38175 -13.08020 -12.71236 -12.54533 -12.33149 -12.02872 -11.78052 -11.43699 -11.05558 -9.52909 -9.02455 -8.69425 -6.40180 0.65299 0.73072 1.39925 1.47097 1.56784 2.09720 2.19080 2.53310 2.73510 3.38170 3.69403 3.74074 3.91783 4.15669 4.24421 4.41940 4.84073 4.86165 4.89624 5.02028 5.19889 5.24299 5.49887 5.60907 5.74873 6.09983 6.18681 6.52255 6.73117 6.85225 8.23098 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.018879 B = 0.010330 C = 0.007097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.788942 B = 2709.999433 C = 3944.616728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.224 4.224 3 C -0.132 4.132 4 C -0.026 4.026 5 O -0.324 6.324 6 C 0.400 3.600 7 F -0.215 7.215 8 F -0.217 7.217 9 C 0.095 3.905 10 C -0.469 4.469 11 H 0.088 0.912 12 C 0.033 3.967 13 N -0.818 5.818 14 Si 0.990 3.010 15 H -0.254 1.254 16 H -0.264 1.264 17 H -0.264 1.264 18 C -0.207 4.207 19 C 0.081 3.919 20 F -0.160 7.160 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.073 0.927 24 H 0.132 0.868 25 H 0.229 0.771 26 H 0.293 0.707 27 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.320 7.252 1.845 7.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.226 4.226 3 C -0.151 4.151 4 C -0.069 4.069 5 O -0.242 6.242 6 C 0.310 3.690 7 F -0.197 7.197 8 F -0.199 7.199 9 C 0.092 3.908 10 C -0.497 4.497 11 H 0.106 0.894 12 C -0.184 4.184 13 N -0.443 5.443 14 Si 0.810 3.190 15 H -0.177 1.177 16 H -0.189 1.189 17 H -0.188 1.188 18 C -0.227 4.227 19 C 0.062 3.938 20 F -0.139 7.139 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.092 0.908 24 H 0.149 0.851 25 H 0.245 0.755 26 H 0.104 0.896 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.167 7.027 1.694 7.322 hybrid contribution 0.154 -0.576 -0.073 0.600 sum -1.013 6.451 1.621 6.729 Atomic orbital electron populations 1.20398 0.89322 1.02404 1.01808 1.19359 0.97245 0.90545 1.15451 1.20837 0.91822 0.98066 1.04325 1.19089 0.90528 0.84883 1.12445 1.86435 1.35682 1.12607 1.89483 1.24214 0.82171 0.91720 0.70873 1.93029 1.76939 1.96784 1.52953 1.93029 1.77044 1.96787 1.52996 1.17075 0.94297 0.87772 0.91673 1.19729 0.90986 1.03388 1.35605 0.89380 1.26907 1.06102 0.93730 0.91614 1.69882 1.41059 1.11355 1.21982 0.85032 0.75133 0.79500 0.79343 1.17673 1.18889 1.18836 1.20992 0.90966 0.99189 1.11599 1.17634 0.89925 0.80649 1.05624 1.91310 1.80257 1.47770 1.94603 0.91869 0.92236 0.90803 0.85062 0.75506 0.89618 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.95 9.82 71.24 0.70 -2.25 15 2 C -0.22 -10.18 5.90 -19.66 -0.12 -10.29 15 3 C -0.13 -5.95 7.89 22.32 0.18 -5.78 15 4 C -0.03 -1.29 6.52 23.06 0.15 -1.14 15 5 O -0.32 -13.67 9.71 -89.83 -0.87 -14.54 15 6 C 0.40 12.07 5.98 113.37 0.68 12.75 15 7 F -0.22 -6.92 15.58 44.97 0.70 -6.22 15 8 F -0.22 -7.17 15.59 44.97 0.70 -6.47 15 9 C 0.09 5.14 5.58 -21.20 -0.12 5.02 15 10 C -0.47 -24.75 8.72 23.40 0.20 -24.55 15 11 H 0.09 4.49 7.64 -2.91 -0.02 4.47 15 12 C 0.03 1.60 5.14 85.25 0.44 2.04 15 13 N -0.82 -42.17 10.96 21.83 0.24 -41.93 15 14 Si 0.99 36.90 29.59 68.60 2.03 38.93 15 15 H -0.25 -9.16 7.11 99.48 0.71 -8.46 15 16 H -0.26 -9.51 7.11 99.48 0.71 -8.80 15 17 H -0.26 -9.37 7.11 99.48 0.71 -8.67 15 18 C -0.21 -11.24 8.66 22.74 0.20 -11.04 15 19 C 0.08 4.06 7.22 22.33 0.16 4.22 15 20 F -0.16 -7.65 16.44 44.97 0.74 -6.91 15 21 H 0.06 2.09 8.14 -2.39 -0.02 2.07 15 22 H 0.06 2.03 7.62 -2.39 -0.02 2.01 15 23 H 0.07 2.29 8.08 -2.39 -0.02 2.27 15 24 H 0.13 5.31 5.09 -2.91 -0.01 5.29 15 25 H 0.23 3.88 8.14 -2.39 -0.02 3.86 15 26 H 0.29 13.53 8.30 -92.70 -0.77 12.76 15 27 H 0.12 6.79 6.17 -2.91 -0.02 6.77 15 Total: -1.00 -61.79 249.80 7.23 -54.56 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 1.22 Total: 13.58 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 2.47 Total: -31.00 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.24 Total: -41.93 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.87 Total: -14.54 kcal Atomic # 9 Polarization: -21.75 SS G_CDS: 2.14 Total: -19.60 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Total: -61.79 7.23 -54.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661301.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.453 kcal (2) G-P(sol) polarization free energy of solvation -61.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds